CsGy5G020950 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G020950
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Ribosomal protein L22p/L17e family protein isoform 1
Location	Gy14Chr5: 26801316 .. 26802044 (+)
RNA-Seq Expression	CsGy5G020950
Synteny	CsGy5G020950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGTTCATTCTTCGAGTTCATTTTCTCCCGCGGGTGAACTTCAGTTTACTGAGGAAGAAATCTCAATTCCTGCAATCGACTTTCGAGGTAAGCTTTCGATTGATGTTCGTTTCTTATCGCATTCTCAATTGCCTTTTTCCAATTGAATTGAGAGAGATGTTCTTCAATATTTTTGCAATTTTCGTGTTTTATTAAACTTAGGGCTTTTTCTTGAGAATTTCTCGATCCGGTTTGTTTCTTAGATTATTTCCGAAATAAAAAATTTAGGAAGGAGAAAGGAGATTTCAAGATCCTTATTGTCGCCAATGAACTGAGTTTCTGAATCACCTGGATTTAGTCTCATGATCGAACTGTTTTCTTAGGTTTTCTTGAGCTGAAGCCACGAATTTCGAGTTTTATTGTATGTTCTTTGTTTAATTTGTTAATTTATCAGGAATATATTAGAAATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGA

mRNA sequence

ATGGATTTTGTTCATTCTTCGAGTTCATTTTCTCCCGCGGGTGAACTTCAGTTTACTGAGGAAGAAATCTCAATTCCTGCAATCGACTTTCGAGGGCTTTTTCTTGAGAATTTCTCGATCCGGAATATATTAGAAATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGA

Coding sequence (CDS)

ATGGATTTTGTTCATTCTTCGAGTTCATTTTCTCCCGCGGGTGAACTTCAGTTTACTGAGGAAGAAATCTCAATTCCTGCAATCGACTTTCGAGGGCTTTTTCTTGAGAATTTCTCGATCCGGAATATATTAGAAATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGA

Protein sequence

MDFVHSSSSFSPAGELQFTEEEISIPAIDFRGLFLENFSIRNILEMKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHNSQLKWDPQISQVPGRRDPYDDMLQDFNNSSK*

Homology

[Close]

BLAST of CsGy5G020950 vs. NCBI nr
Match: KAE8648679.1 (hypothetical protein Csa_008887 [Cucumis sativus])

HSP 1 Score: 284 bits (727), Expect = 8.41e-97
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MDFVHSSSSFSPAGELQFTEEEISIPAIDFRGLFLENFSIRNILEMKFIMEFAEDLVLRL 60
           MDFVHSSSSFSPAGELQFTEEEISIPAIDFRGLFLENFSIRNILEMKFIMEFAEDLVLRL
Sbjct: 1   MDFVHSSSSFSPAGELQFTEEEISIPAIDFRGLFLENFSIRNILEMKFIMEFAEDLVLRL 60

Query: 61  MEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHNSQLKWDPQISQVPGR 120
           MEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHNSQLKWDPQISQVPGR
Sbjct: 61  MEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHNSQLKWDPQISQVPGR 120

Query: 121 RDPYDDMLQDFNNSSK 136
           RDPYDDMLQDFNNSSK
Sbjct: 121 RDPYDDMLQDFNNSSK 136

[Close]

BLAST of CsGy5G020950 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 199 bits (507), Expect = 6.95e-64
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
           SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

[Close]

BLAST of CsGy5G020950 vs. NCBI nr
Match: XP_008446038.1 (PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >KAA0034194.1 uncharacterized protein E6C27_scaffold65G001900 [Cucumis melo var. makuwa] >TYK15726.1 uncharacterized protein E5676_scaffold35G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 1.91e-61
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
           SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of CsGy5G020950 vs. NCBI nr
Match: KAG7012731.1 (hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195 bits (495), Expect = 8.21e-61
Identity = 93/122 (76.23%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 19  TEEEISIPAIDFRGLFLENFS----IRNILEMKFIMEFAEDLVLRLMEDPKERDRRFREH 78
           T EEISIP    +G  L NF      R  LEMKFIMEFAE+LVLR+MEDPKERDR+FRE 
Sbjct: 59  TVEEISIPRSILKGFHLRNFRSGLLFRKKLEMKFIMEFAENLVLRIMEDPKERDRKFRER 118

Query: 79  IYAIKDRCQKTKEMWSYPLRPYGFWTFDRHNSQLKWDPQISQVPGRRDPYDDMLQDFNNS 136
           +YA+KDRCQKTKEMWSYPLRPYGFWTFDRHN+QL WD QISQVPGRRDPYDDMLQD +N+
Sbjct: 119 LYAVKDRCQKTKEMWSYPLRPYGFWTFDRHNAQLHWDAQISQVPGRRDPYDDMLQDIHNN 178

[Close]

BLAST of CsGy5G020950 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 185 bits (470), Expect = 3.04e-58
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKF+MEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
           SQLKWD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61  SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of CsGy5G020950 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 9.26e-62
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
           SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of CsGy5G020950 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 9.26e-62
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
           SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61  SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of CsGy5G020950 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 1.72e-57
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKF+MEFAE+LV+RLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1   MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
           SQL+WD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61  SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of CsGy5G020950 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.41e-56
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 1   MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
            QL+WD QISQVPGRRDPYDD+L D NN+SK
Sbjct: 61  CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of CsGy5G020950 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.41e-56
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 1   MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136
            QL+WD QISQVPGRRDPYDD+L D NN+SK
Sbjct: 61  CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of CsGy5G020950 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 3.5e-36
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           M FIMEFAE+LVLRLME+P+ERDR+ REHIY + +RC+K KEMW+ P+RPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQD 131
           +QL+WDPQISQV GRRDPYDD+L+D
Sbjct: 61  AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]

BLAST of CsGy5G020950 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 3.5e-36
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105
           M FIMEFAE+LVLRLME+P+ERDR+ REHIY + +RC+K KEMW+ P+RPYGFWTF+RHN
Sbjct: 1   MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 106 SQLKWDPQISQVPGRRDPYDDMLQD 131
           +QL+WDPQISQV GRRDPYDD+L+D
Sbjct: 61  AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:

BLAST of CsGy5G020950 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G020950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648679.1	8.41e-97	100.00	hypothetical protein Csa_008887 [Cucumis sativus]	[more]
XP_011655561.1	6.95e-64	100.00	uncharacterized protein LOC101213251 [Cucumis sativus]	[more]
XP_008446038.1	1.91e-61	94.51	PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 P...	[more]
KAG7012731.1	8.21e-61	76.23	hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038891434.1	3.04e-58	89.01	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]

BLAST of CsGy5G020950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BE41	9.26e-62	94.51	uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=...	[more]
A0A5A7SSK1	9.26e-62	94.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DD92	1.72e-57	86.81	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1K907	1.41e-56	85.71	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	1.41e-56	85.71	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]

BLAST of CsGy5G020950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	3.5e-36	75.29	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	3.5e-36	75.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 46..130 e-value: 3.4E-51 score: 171.8
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 46..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G020950.2	CsGy5G020950.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005840	ribosome