CsGy5G020815 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G020815
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionU5 small nuclear ribonucleoprotein 40 kDa protein
LocationGy14Chr5: 26698807 .. 26701727 (+)
RNA-Seq ExpressionCsGy5G020815
SyntenyCsGy5G020815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCGTTCATTTCAGGCTTGACTCCCACTGGAATCGTCTTCTTCGTTCGTCCCTCTCCCTCCCATCTTACCTTATCCGACGACCGACCGGCACTCCGGCGTACCACTAACGCTACTGCAGGCGTCCTTTGTTTCCGCCAACTTCGACTCTTTGTTCACTTCCTGTCCGACGCTCAATTGGTTTGGATCCATCTTCGTTGTATCTCTATGCTTCTTAGTTGGTAAAGTTCTCTTTTTTTATTTTTTTTGTTTGCTGTTCTTTATATATTGAAACATGAATAGAAATGTGCAATGTGTTTGGTATTTGTTTCTGTATCTTTGTTCTCTAAAATTTTGGAATTAAAAAATATAATACAAGAACTTGAATTTCATAATTTTGAGTGGAGAAGTTTATTAAAAATGAGAAAAATAAACGAGAACAGTTGCTAATGCTTCCCTCCGTTTCTGAAATCTGGAAACTAGAAATAAAGAAACTAATATTGGACTGCCACACTCTCAGCTTTTCCTTGGATGTGGAAATCGAGTTTGGCACAATCAGTGATTTGGCTAATTCGATTGTGCAGCTCATCCTCCTTGTTTTTTTGCGTATTATGTTACTTTGCTTTTGTAATTAGACTAGTTGGTCGGATTATTTTTAGAACATTTCCAATTGCTTTAGTTTTCGGTTTGTTTTTAATTGTTGGAAGGCAGTTAGGTTGGGATTTGGGAATAGGCAAGGGTGTAGCTGCTGATGTTCACTGAGATTTGTGGGTGAACGTTTTTGAAGTGGTGATTATAATGAGAGGTTTAGTGTGAAATACTCATTACTGTGTATATCAAGTTATCAACATTTGTTTTGAAAGGTTATCTTGTTTCAGACTAAAGAAAGTTGTTGGGTGGTGTAGTTTTTATAGAATAGTTGCACAGAAATATAGAAGATAGGATTCTCAAGTCATTTCTTATATTTTAATCATCATTCACGAGTCAAGTCCTGTCGTGTGTGTTCTATCTGAATCTTGTTCTATTTTCTTACACATCTCAATTAATTTTTTTTTTTCCATTTTAGAGGTTTTGTCAAATATTTAGCATAAGTCAATATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCTCGGCCAATGGAATGGTCAACCGTTCCATATAATCCTCCTCAAGGACCTGGGCCGAATGTGAAACAGCGAACATCTAGTCTGGAATCACCAATCATGTTGTTGTCAGGCCATCAGAGTGCCATATATACATTAAAGTTCAATCCAGATGGAAACGTGGTTGCCTCTGGGTCTCACGACAAGGAAATTTTTCTCTGGAATGTACATGGGGATTGCAAGAATTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGACCTTCATTGGACTGTTGATGGATCTCAGATAGTTAGTGCCAGTCCCGATAAAACATTGAGAGCATGGGATGTTGAAACTGGAAAACAAATTAAGAAGATGGCAGAACACTCTTCATTTGTCAATTCATGTTGCCCCACGAGAAGAGGGCCGCCACTAATTGTCAGTGGATCAGATGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCTATTCAAACATTCCCGGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGACAAGATCTTCACAGGTGGAATCGATAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCATATGCACCTCAAAACCGATGTGTAAAGATATTTGAAGGGCACCAACATAACTTTGAAAAAAACCTACTGAAATGTAGCTGGTCTGCTGATGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATATTGTACAAGCTTCCTGGCCATACTGGATCTGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCGGTAGTGATAAACAGATATATCTTGGGGAGATTTAATCTACATTCGAAATCGTCAATCTGTACTGTAAGTGCTCTTGTCAATTACTTAATTGCTTCTATTTTCCTAATGTAAGTGACCCACAAAAATGATTTTTGGACGTAGGATTCAAGGTGACATTTCTGGGTAATGTAGTAAACGTCTTCATGACATAAAAACTTGCAATTTGAACTTTGTTTCCATGTGATTTTGTGGGATTAATTTGTAGGCTTTTTTGCAGCCACTGTTTTCTATGGGTAATCTGAGGGACTACAATAGTTTAGTTGAGTACTATTCGAGGTTCAAATTATTTTAGTTCGAGTTTAGAAAGTATTTGTCCAGGAAGAGCTTGCAATACTAAAACAAGTTATATCATATGAATTAAATCGAAAGGGATAAATTGTTGTAAAAAATTCTTTGGAGATTTCTTCATCTTATTCTCTAGTTAAACTTCACATACACACTTCCTTGCTTTAAATTTTGGTGAGACCTGTATTAGAGCATGTTTAAAAAATATTTTCTTGGGTTTGGTTGTATTTTCTTAAAAATTATTATAGAGTACTCTTATTAACAACAAATTACTATAGAAGAACTATCACAGGTTAACTCGGTGATAAAATAGAATAGTCTCATGTGTTCAATTCATTGTGGTCACCTACTAGAGTTTTCTTGACATACAAATGTTGTAGGATCACAACCCCTCACAAATATAAAAAAGTAGGATCACAACCGCTCACAAATAAATTAAATATGTTTCTATAGTTGGTAAAGTATAAGTTTAATTTATATGGCTTATAAATATAATTTTGTTCTCATTGTTTCAATAACGA

mRNA sequence

TCATCGTTCATTTCAGGCTTGACTCCCACTGGAATCGTCTTCTTCGTTCGTCCCTCTCCCTCCCATCTTACCTTATCCGACGACCGACCGGCACTCCGGCGTACCACTAACGCTACTGCAGGCGTCCTTTGTTTCCGCCAACTTCGACTCTTTGTTCACTTCCTGTCCGACGCTCAATTGGTTTGGATCCATCTTCGTTGTATCTCTATGCTTCTTAGTTGAGGTTTTGTCAAATATTTAGCATAAGTCAATATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCTCGGCCAATGGAATGGTCAACCGTTCCATATAATCCTCCTCAAGGACCTGGGCCGAATGTGAAACAGCGAACATCTAGTCTGGAATCACCAATCATGTTGTTGTCAGGCCATCAGAGTGCCATATATACATTAAAGTTCAATCCAGATGGAAACGTGGTTGCCTCTGGGTCTCACGACAAGGAAATTTTTCTCTGGAATGTACATGGGGATTGCAAGAATTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGACCTTCATTGGACTGTTGATGGATCTCAGATAGTTAGTGCCAGTCCCGATAAAACATTGAGAGCATGGGATGTTGAAACTGGAAAACAAATTAAGAAGATGGCAGAACACTCTTCATTTGTCAATTCATGTTGCCCCACGAGAAGAGGGCCGCCACTAATTGTCAGTGGATCAGATGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCTATTCAAACATTCCCGGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGACAAGATCTTCACAGGTGGAATCGATAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCATATGCACCTCAAAACCGATGTGTAAAGATATTTGAAGGGCACCAACATAACTTTGAAAAAAACCTACTGAAATGTAGCTGGTCTGCTGATGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATATTGTACAAGCTTCCTGGCCATACTGGATCTGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCGGTAGTGATAAACAGATATATCTTGGGGAGATTTAATCTACATTCGAAATCGTCAATCTGTACTGTAAGTGCTCTTGTCAATTACTTAATTGCTTCTATTTTCCTAATGTAAGTGACCCACAAAAATGATTTTTGGACGTAGGATTCAAGGTGACATTTCTGGGTAATGTAGTAAACGTCTTCATGACATAAAAACTTGCAATTTGAACTTTGTTTCCATGTGATTTTGTGGGATTAATTTGTAGGCTTTTTTGCAGCCACTGTTTTCTATGGGTAATCTGAGGGACTACAATAGTTTAGTTGAGTACTATTCGAGGTTCAAATTATTTTAGTTCGAGTTTAGAAAGTATTTGTCCAGGAAGAGCTTGCAATACTAAAACAAGTTATATCATATGAATTAAATCGAAAGGGATAAATTGTTGTAAAAAATTCTTTGGAGATTTCTTCATCTTATTCTCTAGTTAAACTTCACATACACACTTCCTTGCTTTAAATTTTGGTGAGACCTGTATTAGAGCATGTTTAAAAAATATTTTCTTGGGTTTGGTTGTATTTTCTTAAAAATTATTATAGAGTACTCTTATTAACAACAAATTACTATAGAAGAACTATCACAGGTTAACTCGGTGATAAAATAGAATAGTCTCATGTGTTCAATTCATTGTGGTCACCTACTAGAGTTTTCTTGACATACAAATGTTGTAGGATCACAACCCCTCACAAATATAAAAAAGTAGGATCACAACCGCTCACAAATAAATTAAATATGTTTCTATAGTTGGTAAAGTATAAGTTTAATTTATATGGCTTATAAATATAATTTTGTTCTCATTGTTTCAATAACGA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCTCGGCCAATGGAATGGTCAACCGTTCCATATAATCCTCCTCAAGGACCTGGGCCGAATGTGAAACAGCGAACATCTAGTCTGGAATCACCAATCATGTTGTTGTCAGGCCATCAGAGTGCCATATATACATTAAAGTTCAATCCAGATGGAAACGTGGTTGCCTCTGGGTCTCACGACAAGGAAATTTTTCTCTGGAATGTACATGGGGATTGCAAGAATTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTAGACCTTCATTGGACTGTTGATGGATCTCAGATAGTTAGTGCCAGTCCCGATAAAACATTGAGAGCATGGGATGTTGAAACTGGAAAACAAATTAAGAAGATGGCAGAACACTCTTCATTTGTCAATTCATGTTGCCCCACGAGAAGAGGGCCGCCACTAATTGTCAGTGGATCAGATGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCTATTCAAACATTCCCGGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGACAAGATCTTCACAGGTGGAATCGATAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAATGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCATATGCACCTCAAAACCGATGTGTAAAGATATTTGAAGGGCACCAACATAACTTTGAAAAAAACCTACTGAAATGTAGCTGGTCTGCTGATGGTAGCAAGGTCACTGCAGGTAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATATTGTACAAGCTTCCTGGCCATACTGGATCTGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCGGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

Protein sequence

MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI*
Homology
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BLAST of CsGy5G020815 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 5.4e-123
Identity = 186/306 (60.78%), Postives = 246/306 (80.39%), Query Frame = 0 

Query: 39  RTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKN 98
           R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+GH  
Sbjct: 51  RCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 110

Query: 99  AVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSG 158
           AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+ +G
Sbjct: 111 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 170

Query: 159 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMT 218
           SDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++  T
Sbjct: 171 SDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT 230

Query: 219 LQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLK 278
           ++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKNLL+
Sbjct: 231 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 290

Query: 279 CSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQ 338
           CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP EPI+ S  SDK+
Sbjct: 291 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKR 350

Query: 339 IYLGEI 345
           +Y+GEI
Sbjct: 351 LYMGEI 356

[Close]
BLAST of CsGy5G020815 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 9.2e-123
Identity = 184/306 (60.13%), Postives = 246/306 (80.39%), Query Frame = 0 

Query: 39  RTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKN 98
           R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+GH  
Sbjct: 52  RCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 111

Query: 99  AVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSG 158
           AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+ +G
Sbjct: 112 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 171

Query: 159 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMT 218
           SDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++  T
Sbjct: 172 SDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT 231

Query: 219 LQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLK 278
           ++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKNLL+
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 291

Query: 279 CSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQ 338
           CSWS DGSK+ AGS+DR VY+WDTTSRR+LYKLPGH GS+NE  FHP EPI+ S  SDK+
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSDKR 351

Query: 339 IYLGEI 345
           +Y+GEI
Sbjct: 352 LYMGEI 357

[Close]
BLAST of CsGy5G020815 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.2e-122
Identity = 185/306 (60.46%), Postives = 246/306 (80.39%), Query Frame = 0 

Query: 39  RTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKN 98
           R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+GH  
Sbjct: 52  RCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 111

Query: 99  AVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSG 158
           AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+ +G
Sbjct: 112 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 171

Query: 159 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMT 218
           SDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++  T
Sbjct: 172 SDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT 231

Query: 219 LQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLK 278
           ++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKNLL+
Sbjct: 232 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLR 291

Query: 279 CSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQ 338
           CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP EPI+ S  SDK+
Sbjct: 292 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKR 351

Query: 339 IYLGEI 345
           +Y+GEI
Sbjct: 352 LYMGEI 357

[Close]
BLAST of CsGy5G020815 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 5.1e-121
Identity = 184/306 (60.13%), Postives = 245/306 (80.07%), Query Frame = 0 

Query: 39  RTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKN 98
           R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G+  
Sbjct: 51  RCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKGYSG 110

Query: 99  AVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSG 158
           AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+ +G
Sbjct: 111 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 170

Query: 159 SDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMT 218
           SDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++  T
Sbjct: 171 SDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYT 230

Query: 219 LQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLK 278
           ++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKNLL+
Sbjct: 231 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 290

Query: 279 CSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQ 338
           CSWS DGSK+ AGS+DR V +WDTTSRRILYKLPGH GS+NE  FHP EPI+ S  SDK+
Sbjct: 291 CSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKR 350

Query: 339 IYLGEI 345
           +Y+GEI
Sbjct: 351 LYMGEI 356

[Close]
BLAST of CsGy5G020815 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 6.2e-111
Identity = 177/308 (57.47%), Postives = 228/308 (74.03%), Query Frame = 0 

Query: 38  QRTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHK 97
           +RTS LE PIM L GH+  IY+ KFN  G  +ASG  DKEIFLWNV+G+C N+ VL+GHK
Sbjct: 46  ERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKGHK 105

Query: 98  NAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVS 157
             +L+LHW+ D ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+ S
Sbjct: 106 GTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLVAS 165

Query: 158 GSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE-VM 217
           GSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E  +
Sbjct: 166 GSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQEDPL 225

Query: 218 MTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNL 277
            TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEKNL
Sbjct: 226 YTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNL 285

Query: 278 LKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSD 337
           +K SWS DG ++  GSSDR VYIWDT ++++ Y LPGH+G+VNE  FHP+EPI+ASC SD
Sbjct: 286 IKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCSSD 345

Query: 338 KQIYLGEI 345
           K IYLGEI
Sbjct: 346 KTIYLGEI 353

[Close]
BLAST of CsGy5G020815 vs. NCBI nr
Match: XP_004135336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_008253 [Cucumis sativus])

HSP 1 Score: 726 bits (1875), Expect = 6.88e-265
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 721 bits (1861), Expect = 9.38e-263
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPN KQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. NCBI nr
Match: XP_038877892.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida])

HSP 1 Score: 707 bits (1825), Expect = 2.89e-257
Identity = 335/344 (97.38%), Postives = 338/344 (98.26%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQG GPN KQR SSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGHGPNGKQRRSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNV GDCKNFMVLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVRGDCKNFMVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVE+GKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVESGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 702 bits (1813), Expect = 1.95e-255
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 702 bits (1813), Expect = 1.95e-255
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. ExPASy TrEMBL
Match: A0A0A0KTB1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 726 bits (1875), Expect = 3.33e-265
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 721 bits (1861), Expect = 4.54e-263
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPN KQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 721 bits (1861), Expect = 4.54e-263
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPN KQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 702 bits (1813), Expect = 9.45e-256
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 702 bits (1813), Expect = 9.45e-256
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 0 

Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+V+ASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]
BLAST of CsGy5G020815 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 647.1 bits (1668), Expect = 7.9e-186
Identity = 293/337 (86.94%), Postives = 314/337 (93.18%), Query Frame = 0 

Query: 8   ENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTLKFNPDGN 67
           EN  A  GPRPMEWSTVP++  QGPGPN K RTSSLE+PIMLLSGH SA+YT+KFNP G 
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWDVE 127
           ++ASGSHD+EIFLW VHGDCKNFMVL+GHKNA+LDLHWT DGSQIVSASPDKT+RAWDVE
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVE 126

Query: 128 TGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 187
           TGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 TGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD KL
Sbjct: 187 SFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRI 307
           C+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DG+KVTAGSSDRMV+IWDTTSRR 
Sbjct: 247 CVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 345
           +YKLPGHTGSVNECVFHP+EPI+ SC SDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]
BLAST of CsGy5G020815 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-40
Identity = 90/296 (30.41%), Postives = 154/296 (52.03%), Query Frame = 0 

Query: 50  LSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVH----GDCKNFMVLRGHKNAVLDLHW 109
           L+ H  A+ ++KF+ DG ++AS S DK I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 TVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           + D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQI 340
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E ++AS   DK +
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]
BLAST of CsGy5G020815 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-30
Identity = 81/296 (27.36%), Postives = 128/296 (43.24%), Query Frame = 0 

Query: 49  LLSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVD 108
           +L GH+ A+   +FN DGN   +   D+ I LWN H         + H   V D+H T D
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGIL-IKTYKSHGREVRDVHVTSD 72

Query: 109 GSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWD 168
            ++  S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++WD
Sbjct: 73  NAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRVWD 132

Query: 169 MRQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 228
            R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G  
Sbjct: 133 CRSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLGQP 192

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 288
             +  + +S DG+ +L   +D  L + D          +++++GH     K    C  + 
Sbjct: 193 --VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCLTN 252

Query: 289 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQI 340
             + V  GS D +V+ WD    ++L K   H   V    +HP E  + +   D  I
Sbjct: 253 SDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTI 294

[Close]
BLAST of CsGy5G020815 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-28
Identity = 84/301 (27.91%), Postives = 143/301 (47.51%), Query Frame = 0 

Query: 50  LSGHQSAIYTLKFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDG 109
           ++GH  A+  + F+PDG  +ASGS D  + LW+++ +   F   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 110 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 169
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 170 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 229
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 289
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK------- 344

Query: 290 SADGSKVTAGSSDRMVYIWD-TTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIY 342
                ++ +GS D  +++W+ + S++   +L GH   VN   F P    +AS   DK + 
Sbjct: 345 GDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVR 386

[Close]
BLAST of CsGy5G020815 vs. TAIR 10
Match: AT1G10580.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-26
Identity = 73/291 (25.09%), Postives = 133/291 (45.70%), Query Frame = 0 

Query: 51  SGHQSAIYTLKFNP-DGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDG 110
           SGH   +  ++F P  G+++ S   D ++ +W+V+   K      GH  AV D+ ++ DG
Sbjct: 279 SGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDG 338

Query: 111 SQIVSASPDKTLRAWDVETGKQIKKMAEHS-SFVNSCCPTRRGPPLIVSGSDDGTAKLWD 170
           S+ ++A  DK ++ WD ETG+ I   +     +V    P      ++++G  D     WD
Sbjct: 339 SKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 398

Query: 171 MRQRGAIQTFPDKY-QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQDMI 230
           +      Q +      +  ++F D + +  T   D  ++VW+     V+  + + H   +
Sbjct: 399 INTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 458

Query: 231 TGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGS 290
             + + P+G++L    +D ++ I+  R     N+  K F G  H       + ++S DG 
Sbjct: 459 PSISVHPNGNWLAAQSLDNQILIYSTRERFQLNK-KKRFAG--HIVAGYACQVNFSPDGR 518

Query: 291 KVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPI-VASCGSD 337
            V +G  +   + WD  S ++   L  H G      +HP E   VA+CG D
Sbjct: 519 FVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKVATCGWD 566

The following BLAST results are available for this feature:
BLAST of CsGy5G020815 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q96DI75.4e-12360.78U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR... [more]
Q6PE019.2e-12360.13U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn... [more]
Q2HJH61.2e-12260.46U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP... [more]
Q5RF515.1e-12160.13U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR... [more]
Q55AR86.2e-11157.47U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX... [more]
BLAST of CsGy5G020815 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135336.16.88e-265100.00U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 ... [more]
XP_008446018.19.38e-26399.13PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA... [more]
XP_038877892.12.89e-25797.38U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida][more]
XP_022945717.11.95e-25596.22U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735... [more]
XP_022966914.11.95e-25596.22U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima][more]
BLAST of CsGy5G020815 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTB13.33e-265100.00WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G... [more]
A0A5A7SYI14.54e-26399.13U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BDK54.54e-26399.13U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1HV609.45e-25696.22U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1G1Q09.45e-25696.22U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ... [more]
BLAST of CsGy5G020815 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43770.17.9e-18686.94Transducin/WD40 repeat-like superfamily protein [more]
AT3G49660.11.5e-4030.41Transducin/WD40 repeat-like superfamily protein [more]
AT5G64730.14.2e-3027.36Transducin/WD40 repeat-like superfamily protein [more]
AT5G52820.11.8e-2827.91WD-40 repeat family protein / notchless protein, putative [more]
AT1G10580.11.7e-2625.09Transducin/WD40 repeat-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 196..210
score: 33.43
coord: 112..126
score: 38.69
coord: 155..169
score: 42.91
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 43..82
e-value: 3.9E-9
score: 46.4
coord: 258..301
e-value: 1.3E-5
score: 34.7
coord: 304..343
e-value: 1.4E-4
score: 31.2
coord: 212..251
e-value: 1.6E-8
score: 44.3
coord: 128..168
e-value: 1.6E-7
score: 41.0
coord: 86..125
e-value: 2.0E-7
score: 40.7
coord: 171..209
e-value: 3.2E-4
score: 30.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 260..301
e-value: 1.4E-5
score: 25.7
coord: 46..82
e-value: 2.2E-7
score: 31.5
coord: 130..168
e-value: 4.1E-4
score: 21.1
coord: 307..341
e-value: 0.0012
score: 19.6
coord: 88..125
e-value: 4.2E-4
score: 21.1
coord: 184..209
e-value: 0.0089
score: 16.9
coord: 214..251
e-value: 7.2E-6
score: 26.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..177
score: 10.541869
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 50..83
score: 16.055872
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 311..344
score: 9.606159
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 93..134
score: 16.022453
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 184..218
score: 12.580379
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 219..253
score: 13.516088
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 280..310
score: 10.040596
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 42..344
e-value: 1.1E-121
score: 407.3
NoneNo IPR availablePANTHERPTHR44006U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 34..344
NoneNo IPR availablePANTHERPTHR44006:SF1U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEINcoord: 34..344
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 50..83
score: 13.211037
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 219..253
score: 11.207411
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 311..344
score: 9.441055
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 177..214
score: 9.151057
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 93..130
score: 12.182859
NoneNo IPR availableCDDcd00200WD40coord: 50..341
e-value: 1.04698E-73
score: 227.988
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 69..83
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 155..169
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 196..210
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 288..302
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 112..126
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 47..341

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G020815.1CsGy5G020815.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0071013 catalytic step 2 spliceosome
molecular_function GO:0005515 protein binding