CsGy5G020773 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G020773
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transcription termination factor MTERF5
Location	Gy14Chr5: 26680007 .. 26680672 (+)
RNA-Seq Expression	CsGy5G020773
Synteny	CsGy5G020773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAATTCTAGAATCGGATGAACAAGTAACTGCTGCTATTTGTCGTTCTCCAAGGCTTCTGATTTGTGATTTGAAGGGTAATTTTAAATCTAGCGCTGATGTTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAACGAAAATGATTACATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAGTGATTGGTGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGGAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTAGAGATTTCCATTTTATTTAACATGTTCAGAGGAGAAATTGAGGGATGTTGCAGATTTCTGTTCCAACACTGCAAAGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAGATCTTCTTAAAATCAAAAAGATTGCTTCGGTATTTGTGAAAGGGGAGAGAATTTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGGGGCAATGTTGCAAGTTAA

mRNA sequence

ATGAAGGAAATTCTAGAATCGGATGAACAAGTAACTGCTGCTATTTGTCGTTCTCCAAGGCTTCTGATTTGTGATTTGAAGGGTAATTTTAAATCTAGCGCTGATGTTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAACGAAAATGATTACATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAGTGATTGGTGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGAGAAATTGAGGGATGTTGCAGATTTCTGTTCCAACACTGCAAAGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAGATCTTCTTAAAATCAAAAAGATTGCTTCGGTATTTGTGAAAGGGGAGAGAATTTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGGGGCAATGTTGCAAGTTAA

Coding sequence (CDS)

ATGAAGGAAATTCTAGAATCGGATGAACAAGTAACTGCTGCTATTTGTCGTTCTCCAAGGCTTCTGATTTGTGATTTGAAGGGTAATTTTAAATCTAGCGCTGATGTTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAACGAAAATGATTACATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAGTGATTGGTGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGAGAAATTGAGGGATGTTGCAGATTTCTGTTCCAACACTGCAAAGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAGATCTTCTTAAAATCAAAAAGATTGCTTCGGTATTTGTGAAAGGGGAGAGAATTTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGGGGCAATGTTGCAAGTTAA

Protein sequence

MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYALFEKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVKDLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS*

Homology

[Close]

BLAST of CsGy5G020773 vs. NCBI nr
Match: KAE8648668.1 (hypothetical protein Csa_008761 [Cucumis sativus])

HSP 1 Score: 354 bits (909), Expect = 4.77e-123
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ
Sbjct: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALFEKLRDVADFCSNTAKLDPGTLISYPVLFKYS 120
           KADRVIGAVKTVKELGIEPKARMFIYALFEKLRDVADFCSNTAKLDPGTLISYPVLFKYS
Sbjct: 61  KADRVIGAVKTVKELGIEPKARMFIYALFEKLRDVADFCSNTAKLDPGTLISYPVLFKYS 120

Query: 121 VDKRLQPRYKVLEVLKVKDLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNV 180
           VDKRLQPRYKVLEVLKVKDLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNV
Sbjct: 121 VDKRLQPRYKVLEVLKVKDLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNV 180

Query: 181 AS 182
           AS
Sbjct: 181 AS 182

[Close]

BLAST of CsGy5G020773 vs. NCBI nr
Match: XP_011655534.2 (transcription termination factor MTEF1, chloroplastic-like [Cucumis sativus] >KAE8648645.1 hypothetical protein Csa_007996 [Cucumis sativus])

HSP 1 Score: 270 bits (690), Expect = 5.85e-87
Identity = 151/225 (67.11%), Postives = 164/225 (72.89%), Query Frame = 0


Query: 1   MKEILESDEQVTAAIC-RSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFM 60
           +KEILESDEQVTAA+  R P LLI D +GNFKSS+D+LASEGVPSRNI KMI LNPRTFM
Sbjct: 144 IKEILESDEQVTAAVIYRFPSLLISDWRGNFKSSSDILASEGVPSRNIKKMIALNPRTFM 203

Query: 61  QKADRVIGAVKTVKELGIEPKARMFIYALF------------------------------ 120
           QKADR+I AVKTVKELGIEPKARMFIYALF                              
Sbjct: 204 QKADRMIDAVKTVKELGIEPKARMFIYALFVRLSMNDSTWKKKINVMKSLGWSEKEIFSA 263

Query: 121 ------------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKV 180
                       EKLRDVADFC N AKLDP TLI+YP  FK S++KRLQPRYKVLEVLKV
Sbjct: 264 FKRYPFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKV 323

Query: 181 KDLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           K+LLKIKKI  V ++GER FVEKYVVKHLDEIPNLMDIYRGNVA+
Sbjct: 324 KNLLKIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAA 368

[Close]

BLAST of CsGy5G020773 vs. NCBI nr
Match: XP_031741755.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis sativus] >KGN52212.2 hypothetical protein Csa_007927 [Cucumis sativus])

HSP 1 Score: 263 bits (671), Expect = 4.65e-84
Identity = 143/224 (63.84%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILE DEQVTAA+ R P LLICDLKGNFKS+ DVLASEGVPSRNI K I LNPR  M 
Sbjct: 145 LKEILEPDEQVTAAVSRFPGLLICDLKGNFKSNIDVLASEGVPSRNIAKTIALNPRAIML 204

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
             DR+I AVK VKELG+EPKAR F++A+                                
Sbjct: 205 NVDRMINAVKRVKELGLEPKARTFVHAVRVVLSMGDSTWKKKINVMKSLGVSEKEIFSAF 264

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      EKLRDVADFCSNTAKLDP +LISYPVLFKYSV KRLQPR KV+EVLK+K
Sbjct: 265 KRFPPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMK 324

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLKIK+IASVFVKGE+ FVEKY+VKHLDEIPNLMDIY+GNV +
Sbjct: 325 NLLKIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYKGNVEA 368

[Close]

BLAST of CsGy5G020773 vs. NCBI nr
Match: XP_008445929.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo] >KAA0034114.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa] >TYK15807.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (662), Expect = 9.74e-83
Identity = 141/224 (62.95%), Postives = 159/224 (70.98%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVTAAICR P LLICDLK N K   DVLASEGVPSRNI KMI +NPR+ MQ
Sbjct: 144 LKEILESDEQVTAAICRYPSLLICDLKVNLKPQLDVLASEGVPSRNIAKMIEMNPRSIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+  AVKTVKELGIEPKARMF+YA+                                
Sbjct: 204 KVDRMTLAVKTVKELGIEPKARMFVYAVLIRLSMSDSTWKKKINVMKSLGWSEKEIFIAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      +K+RDVADFC NTAKLDPGTL+SYP LF+ S++KRL  RYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEKKIRDVADFCFNTAKLDPGTLVSYPKLFRLSLEKRLPLRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIA +F++GE+ FVEKYVVKHLDEIPNLMDIYRGNV +
Sbjct: 324 NLLKNKKIAGLFLQGEKTFVEKYVVKHLDEIPNLMDIYRGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. NCBI nr
Match: KAA0034116.1 (transcription termination factor MTERF2 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (660), Expect = 1.95e-82
Identity = 144/224 (64.29%), Postives = 157/224 (70.09%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVT AI R P LLICDLKG+ K   DVL SEGVPSRNI++MI+L PR  MQ
Sbjct: 144 LKEILESDEQVTTAIFRYPSLLICDLKGDLKPHIDVLVSEGVPSRNISRMISLQPRAIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+I AVKTVKELGIEPKAR F+YA+                                
Sbjct: 204 KVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      EK+RDVADFC NTAKLDPGTLISYP LFK S DKRL+PRYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIASV V+GER FVEKYVVKHLDEIPNLMDIY GNV +
Sbjct: 324 NLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. ExPASy TrEMBL
Match: A0A5D3CV65 (Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003110 PE=3 SV=1)

HSP 1 Score: 259 bits (662), Expect = 4.72e-83
Identity = 141/224 (62.95%), Postives = 159/224 (70.98%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVTAAICR P LLICDLK N K   DVLASEGVPSRNI KMI +NPR+ MQ
Sbjct: 144 LKEILESDEQVTAAICRYPSLLICDLKVNLKPQLDVLASEGVPSRNIAKMIEMNPRSIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+  AVKTVKELGIEPKARMF+YA+                                
Sbjct: 204 KVDRMTLAVKTVKELGIEPKARMFVYAVLIRLSMSDSTWKKKINVMKSLGWSEKEIFIAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      +K+RDVADFC NTAKLDPGTL+SYP LF+ S++KRL  RYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEKKIRDVADFCFNTAKLDPGTLVSYPKLFRLSLEKRLPLRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIA +F++GE+ FVEKYVVKHLDEIPNLMDIYRGNV +
Sbjct: 324 NLLKNKKIAGLFLQGEKTFVEKYVVKHLDEIPNLMDIYRGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. ExPASy TrEMBL
Match: A0A1S3BDU9 (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488808 PE=3 SV=1)

HSP 1 Score: 259 bits (662), Expect = 4.72e-83
Identity = 141/224 (62.95%), Postives = 159/224 (70.98%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVTAAICR P LLICDLK N K   DVLASEGVPSRNI KMI +NPR+ MQ
Sbjct: 144 LKEILESDEQVTAAICRYPSLLICDLKVNLKPQLDVLASEGVPSRNIAKMIEMNPRSIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+  AVKTVKELGIEPKARMF+YA+                                
Sbjct: 204 KVDRMTLAVKTVKELGIEPKARMFVYAVLIRLSMSDSTWKKKINVMKSLGWSEKEIFIAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      +K+RDVADFC NTAKLDPGTL+SYP LF+ S++KRL  RYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEKKIRDVADFCFNTAKLDPGTLVSYPKLFRLSLEKRLPLRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIA +F++GE+ FVEKYVVKHLDEIPNLMDIYRGNV +
Sbjct: 324 NLLKNKKIAGLFLQGEKTFVEKYVVKHLDEIPNLMDIYRGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 258 bits (660), Expect = 9.46e-83
Identity = 144/224 (64.29%), Postives = 157/224 (70.09%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVT AI R P LLICDLKG+ K   DVL SEGVPSRNI++MI+L PR  MQ
Sbjct: 144 LKEILESDEQVTTAIFRYPSLLICDLKGDLKPHIDVLVSEGVPSRNISRMISLQPRAIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+I AVKTVKELGIEPKAR F+YA+                                
Sbjct: 204 KVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      EK+RDVADFC NTAKLDPGTLISYP LFK S DKRL+PRYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIASV V+GER FVEKYVVKHLDEIPNLMDIY GNV +
Sbjct: 324 NLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. ExPASy TrEMBL
Match: A0A5A7SW09 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001070 PE=3 SV=1)

HSP 1 Score: 258 bits (660), Expect = 9.46e-83
Identity = 144/224 (64.29%), Postives = 157/224 (70.09%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVT AI R P LLICDLKG+ K   DVL SEGVPSRNI++MI+L PR  MQ
Sbjct: 144 LKEILESDEQVTTAIFRYPSLLICDLKGDLKPHIDVLVSEGVPSRNISRMISLQPRAIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+I AVKTVKELGIEPKAR F+YA+                                
Sbjct: 204 KVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      EK+RDVADFC NTAKLDPGTLISYP LFK S DKRL+PRYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIASV V+GER FVEKYVVKHLDEIPNLMDIY GNV +
Sbjct: 324 NLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. ExPASy TrEMBL
Match: A0A1S3BDE1 (transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488812 PE=3 SV=1)

HSP 1 Score: 258 bits (660), Expect = 9.46e-83
Identity = 144/224 (64.29%), Postives = 157/224 (70.09%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +KEILESDEQVT AI R P LLICDLKG+ K   DVL SEGVPSRNI++MI+L PR  MQ
Sbjct: 144 LKEILESDEQVTTAIFRYPSLLICDLKGDLKPHIDVLVSEGVPSRNISRMISLQPRAIMQ 203

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           K DR+I AVKTVKELGIEPKAR F+YA+                                
Sbjct: 204 KVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAF 263

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      EK+RDVADFC NTAKLDPGTLISYP LFK S DKRL+PRYKVLEVLKVK
Sbjct: 264 KRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVK 323

Query: 181 DLLKIKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRGNVAS 182
           +LLK KKIASV V+GER FVEKYVVKHLDEIPNLMDIY GNV +
Sbjct: 324 NLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEA 367

[Close]

BLAST of CsGy5G020773 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-16
Identity = 57/222 (25.68%), Postives = 101/222 (45.50%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +K +L+SDE++ AA+ R+  + + D   N   + + +A  GVP + I  ++T  P   MQ
Sbjct: 180 LKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQ 239

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYAL---------------FE--------------- 120
           K        K  +E+G  P+   F+ A+               FE               
Sbjct: 240 KNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCA 299

Query: 121 -------------KLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKV 179
                        K+    ++  N   + P ++   PV+  +S++KR+ PR  V +VL  
Sbjct: 300 FKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVS 359

[Close]

BLAST of CsGy5G020773 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-09
Identity = 47/223 (21.08%), Postives = 89/223 (39.91%), Query Frame = 0


Query: 1   MKEILESDEQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQ 60
           +K IL  +E V   + R  R     +         +    GVP ++I  ++  +P TF  
Sbjct: 167 LKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFS 226

Query: 61  KADRVIGAVKTVKELGIEPKARMFIYALF------------------------------- 120
           +  R    +  V   G +PK   F++A+                                
Sbjct: 227 RERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAI 286

Query: 121 -----------EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVK 180
                      EK+    ++  N   L    +++ PV+   S++KR++PR +V+ +L  K
Sbjct: 287 MRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSK 346

[Close]

BLAST of CsGy5G020773 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 36/135 (26.67%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 9   EQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFMQKADR-VIG 68
           E V   +CR P +  C ++   +     L   GV + +  ++I   P   +  AD+ V+ 
Sbjct: 421 EIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLP 480

Query: 69  AVKTVKELGIEPKARMFI---------YALFEKLRDVADFCSNTAKLDPGTLISYPVLFK 128
            +K + E+GI  +   F+         Y++ + LR   +F  N+ +     +I YP  F 
Sbjct: 481 RLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFS 540

Query: 129 YSVDKRLQPRYKVLE 134
           YS++KR++PR++VL+
Sbjct: 541 YSLEKRIKPRFRVLK 555

[Close]

BLAST of CsGy5G020773 vs. TAIR 10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.4e-08
Identity = 43/195 (22.05%), Postives = 90/195 (46.15%), Query Frame = 0


Query: 1   MKEILESD-EQVTAAICRSPRLLICDLKGNFKSSADVLASEGVPSRNITKMITLNPRTFM 60
           +K+++E   +  T     + R+L    +   +    V  S G    ++ ++    P    
Sbjct: 220 LKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLK 279

Query: 61  QKADRVIGAVKTVKELGIEPKARMFIYALF--------EKLRDVADFCSNTAKLDPGTLI 120
               +++ + +T  +LG      + +   +        E ++   +F     K     L+
Sbjct: 280 VSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALV 339

Query: 121 SYPVLFKYSVDKRLQPRYKVLEVLKVKDLLK----IKKIASVFVKGERIFVEKYVVKHLD 180
            +P +F YS++KR+ PR  +LE L  K LL+    +  ++SV    +  F+++YV+KH +
Sbjct: 340 LHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHNE 399

Query: 181 EIPNLMDIY-RGNVA 182
            +P LM I+ +G+V+
Sbjct: 400 LVPTLMAIFTKGSVS 414

[Close]

BLAST of CsGy5G020773 vs. TAIR 10
Match: AT1G61960.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 36/156 (23.08%), Postives = 69/156 (44.23%), Query Frame = 0


Query: 35  DVLASEGVPSRNITKMITLNPRTFMQKADRVIGAVKTVKELGIEPKARMFIYALF----- 94
           + L S G+    +  ++  +P+       +++ +++T   LG        +   +     
Sbjct: 298 ETLKSCGLLKHEVLLLLKKHPKCICSSEQKIVNSIETFLGLGFSRDEFAMMVKRYPQCID 357

Query: 95  ---EKLRDVADFCSNTAKLDPGTLISYPVLFKYSVDKRLQPRYKVLEVLKVKDLLK---- 154
              E ++   +F           L+S P +F YS++KR  PR  V++ L  K L+K    
Sbjct: 358 YTAETVKKKTEFIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLISKGLMKDGSE 417

Query: 155 IKKIASVFVKGERIFVEKYVVKHLDEIPNLMDIYRG 179
              ++SV    ++ F+ +YV+KH    P LM I+ G
Sbjct: 418 APPMSSVLTSTDQAFLRRYVMKHDKLAPELMAIFTG 453

The following BLAST results are available for this feature:

BLAST of CsGy5G020773 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G020773 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648668.1	4.77e-123	100.00	hypothetical protein Csa_008761 [Cucumis sativus]	[more]
XP_011655534.2	5.85e-87	67.11	transcription termination factor MTEF1, chloroplastic-like [Cucumis sativus] >KA...	[more]
XP_031741755.1	4.65e-84	63.84	transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucum...	[more]
XP_008445929.1	9.74e-83	62.95	PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ...	[more]
KAA0034116.1	1.95e-82	64.29	transcription termination factor MTERF2 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy5G020773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CV65	4.72e-83	62.95	Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BDU9	4.72e-83	62.95	transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5D3CXX8	9.46e-83	64.29	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SW09	9.46e-83	64.29	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BDE1	9.46e-83	64.29	transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3...	[more]

BLAST of CsGy5G020773 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	3.1e-16	25.68	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	2.2e-09	21.08	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	3.7e-09	26.67	Mitochondrial transcription termination factor family protein	[more]
AT1G61990.1	5.4e-08	22.05	Mitochondrial transcription termination factor family protein	[more]
AT1G61960.1	2.0e-07	23.08	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 107..138 e-value: 0.16 score: 21.1 coord: 12..43 e-value: 49.0 score: 12.8 coord: 48..78 e-value: 110.0 score: 11.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 89..150 e-value: 1.0E-6 score: 27.9
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 90..180
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..88
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..84 e-value: 7.0E-10 score: 40.5 coord: 85..171 e-value: 1.3E-11 score: 46.1
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 90..180
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G020773.1	CsGy5G020773.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding