CsGy5G018100 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G018100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L2, chloroplastic
Location	Gy14Chr5: 24233886 .. 24234194 (+)
RNA-Seq Expression	CsGy5G018100
Synteny	CsGy5G018100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGACTATCATTTGATGGGATCCACAGAGACCATGTCTTCATTTATAGGCTCCCAAGTACCTGGATCAATCAAAAGTTCGATTCTTATTGGAACTGTCCATATCCAGTTCATCCTTTGGAACCATATCACATCCCAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAATACTTTTTAG

mRNA sequence

ATGGTACGACTATCATTTGATGGGATCCACAGAGACCATGTCTTCATTTATAGGCTCCCAAGTACCTGGATCAATCAAAAGTTCGATTCTTATTGGAACTGTCCATATCCAGTTCATCCTTTGGAACCATATCACATCCCAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAATACTTTTTAG

Coding sequence (CDS)

ATGGTACGACTATCATTTGATGGGATCCACAGAGACCATGTCTTCATTTATAGGCTCCCAAGTACCTGGATCAATCAAAAGTTCGATTCTTATTGGAACTGTCCATATCCAGTTCATCCTTTGGAACCATATCACATCCCAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAATACTTTTTAG

Protein sequence

MVRLSFDGIHRDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPINTF*

Homology

[Close]

BLAST of CsGy5G018100 vs. ExPASy Swiss-Prot
Match: A9L9D7 (50S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 101
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI+
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIS 123

[Close]

BLAST of CsGy5G018100 vs. ExPASy Swiss-Prot
Match: Q8S8V3 (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 122

[Close]

BLAST of CsGy5G018100 vs. ExPASy Swiss-Prot
Match: Q8S8U0 (50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 122

[Close]

BLAST of CsGy5G018100 vs. ExPASy Swiss-Prot
Match: A4QJF6 (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 122

[Close]

BLAST of CsGy5G018100 vs. ExPASy Swiss-Prot
Match: A4QJP0 (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 122

[Close]

BLAST of CsGy5G018100 vs. NCBI nr
Match: AAN04585.1 (ribosomal protein L2, partial [Pinguicula grandiflora] >AAN04586.1 ribosomal protein L2, partial [Pinguicula ehlersiae] >AAN04587.1 ribosomal protein L2, partial [Pinguicula gracilis] >AAN04588.1 ribosomal protein L2, partial [Utricularia alpina] >AAN04589.1 ribosomal protein L2, partial [Utricularia pubescens] >AAN04590.1 ribosomal protein L2, partial [Utricularia geminiscapa])

HSP 1 Score: 115 bits (288), Expect = 2.02e-31
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 5   DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 57

[Close]

BLAST of CsGy5G018100 vs. NCBI nr
Match: AAN04584.1 (ribosomal protein L2, partial [Columnea sp. Lindqvist & Albert 30])

HSP 1 Score: 115 bits (288), Expect = 2.02e-31
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 5   DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 57

[Close]

BLAST of CsGy5G018100 vs. NCBI nr
Match: ABR67197.1 (ribosomal protein L2, partial [Tradescantia ohiensis])

HSP 1 Score: 115 bits (289), Expect = 2.48e-31
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI+
Sbjct: 25  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIS 77

[Close]

BLAST of CsGy5G018100 vs. NCBI nr
Match: KAB2064411.1 (hypothetical protein ES319_A09G017300v1, partial [Gossypium barbadense])

HSP 1 Score: 115 bits (288), Expect = 2.73e-31
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 13  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 65

[Close]

BLAST of CsGy5G018100 vs. NCBI nr
Match: CAA9893425.1 (unnamed protein product [Spirodela intermedia] >CAA9893583.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 115 bits (289), Expect = 3.04e-31
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI+
Sbjct: 29  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIS 81

[Close]

BLAST of CsGy5G018100 vs. ExPASy TrEMBL
Match: A0A0A0KP49 (Ribosomal protein L2 OS=Cucumis sativus OX=3659 GN=Csa_5G524810 PE=3 SV=1)

HSP 1 Score: 211 bits (538), Expect = 2.96e-69
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MVRLSFDGIH---------RDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYG 60
           MVRLSFDGIH         RDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYG
Sbjct: 1   MVRLSFDGIHLRIPLNGIHRDHVFIYRLPSTWINQKFDSYWNCPYPVHPLEPYHIPDIYG 60

Query: 61  RIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPINTF 102
           R+VT+EYDPNRNAYICLIHYGDGEKRYILHP   IIGDTI+S TEVPINTF
Sbjct: 61  RVVTVEYDPNRNAYICLIHYGDGEKRYILHPIETIIGDTIISSTEVPINTF 111

[Close]

BLAST of CsGy5G018100 vs. ExPASy TrEMBL
Match: Q8HTR2 (Ribosomal protein L2 (Fragment) OS=Utricularia pubescens OX=192312 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 115 bits (288), Expect = 9.79e-32
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 5   DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 57

[Close]

BLAST of CsGy5G018100 vs. ExPASy TrEMBL
Match: Q8HTR6 (Ribosomal protein L2 (Fragment) OS=Pinguicula grandiflora OX=192266 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 115 bits (288), Expect = 9.79e-32
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 5   DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 57

[Close]

BLAST of CsGy5G018100 vs. ExPASy TrEMBL
Match: Q8HTR5 (Ribosomal protein L2 (Fragment) OS=Pinguicula ehlersiae OX=192264 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 115 bits (288), Expect = 9.79e-32
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 5   DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 57

[Close]

BLAST of CsGy5G018100 vs. ExPASy TrEMBL
Match: Q8HTR4 (Ribosomal protein L2 (Fragment) OS=Pinguicula gracilis OX=192265 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 115 bits (288), Expect = 9.79e-32
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIN 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 
Sbjct: 5   DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIK 57

[Close]

BLAST of CsGy5G018100 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-26
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 122

[Close]

BLAST of CsGy5G018100 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-26
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 48  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 100
           DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI
Sbjct: 71  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI 122

The following BLAST results are available for this feature:

BLAST of CsGy5G018100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9L9D7	2.0e-25	98.11	50S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1	[more]
Q8S8V3	3.5e-25	100.00	50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-...	[more]
Q8S8U0	3.5e-25	100.00	50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-...	[more]
A4QJF6	3.5e-25	100.00	50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium OX=434059 GN=r...	[more]
A4QJP0	3.5e-25	100.00	50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=r...	[more]

BLAST of CsGy5G018100 vs. NCBI nr


Match Name	E-value	Identity	Description
AAN04585.1	2.02e-31	98.11	ribosomal protein L2, partial [Pinguicula grandiflora] >AAN04586.1 ribosomal pro...	[more]
AAN04584.1	2.02e-31	98.11	ribosomal protein L2, partial [Columnea sp. Lindqvist & Albert 30]	[more]
ABR67197.1	2.48e-31	98.11	ribosomal protein L2, partial [Tradescantia ohiensis]	[more]
KAB2064411.1	2.73e-31	98.11	hypothetical protein ES319_A09G017300v1, partial [Gossypium barbadense]	[more]
CAA9893425.1	3.04e-31	98.11	unnamed protein product [Spirodela intermedia] >CAA9893583.1 unnamed protein pro...	[more]

BLAST of CsGy5G018100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP49	2.96e-69	85.59	Ribosomal protein L2 OS=Cucumis sativus OX=3659 GN=Csa_5G524810 PE=3 SV=1	[more]
Q8HTR2	9.79e-32	98.11	Ribosomal protein L2 (Fragment) OS=Utricularia pubescens OX=192312 GN=rpl2 PE=3 ...	[more]
Q8HTR6	9.79e-32	98.11	Ribosomal protein L2 (Fragment) OS=Pinguicula grandiflora OX=192266 GN=rpl2 PE=3...	[more]
Q8HTR5	9.79e-32	98.11	Ribosomal protein L2 (Fragment) OS=Pinguicula ehlersiae OX=192264 GN=rpl2 PE=3 S...	[more]
Q8HTR4	9.79e-32	98.11	Ribosomal protein L2 (Fragment) OS=Pinguicula gracilis OX=192265 GN=rpl2 PE=3 SV...	[more]

BLAST of CsGy5G018100 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	2.5e-26	100.00	ribosomal protein L2	[more]
ATCG01310.1	2.5e-26	100.00	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 29..93 e-value: 4.7E-10 score: 49.4
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 3..101
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 49..93 e-value: 1.0E-16 score: 60.6
None	No IPR available	GENE3D	2.40.50.140		coord: 42..91 e-value: 6.3E-17 score: 63.0
None	No IPR available	PANTHER	PTHR13691:SF55	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 3..101
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 44..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G018100.1	CsGy5G018100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome