CsGy5G017180 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G017180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type E3 ubiquitin transferase
Location	Gy14Chr5: 23532584 .. 23533111 (+)
RNA-Seq Expression	CsGy5G017180
Synteny	CsGy5G017180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCAGCACCGGCGACGCCGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGTGATCGCCGCCGCTTCCTCTCCGGCGACCAATCGTCGGTTAACGACCCTCACACCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCGAATGGCGGTGGACGGCGGTGGTGGCGGTAAAGACGTGGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTAAGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCCAGCTGTCCGATGTGTCGTACTAATGCTACTCCGACGTCGTTTAACGATAGGCTGCAGTTTGAAACGCAGTCCAATTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGGTTGA

mRNA sequence

ATGTCAAGCAGCACCGGCGACGCCGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGTGATCGCCGCCGCTTCCTCTCCGGCGACCAATCGTCGGTTAACGACCCTCACACCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCGAATGGCGGTGGACGGCGGTGGTGGCGGTAAAGACGTGGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTAAGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCCAGCTGTCCGATGTGTCGTACTAATGCTACTCCGACGTCGTTTAACGATAGGCTGCAGTTTGAAACGCAGTCCAATTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGGTTGA

Coding sequence (CDS)

ATGTCAAGCAGCACCGGCGACGCCGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGTTGGTGTGATCGCCGCCGCTTCCTCTCCGGCGACCAATCGTCGGTTAACGACCCTCACACCTTACCGATAACGGATACGCCGCGGAGCACCGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAGTATGAGAAGCGAATGGCGGTGGACGGCGGTGGTGGCGGTAAAGACGTGGATGGGGATGGCACGTGCGCGATTTGTTTGAGTGAATTTGAAGAAGGGGAGGAAATAAAGACGTTGCCTGAGTGTAAGCATTCGTATCACATGCCGTGTATCGACATGTGGCTTTACTCTCACTCCAGCTGTCCGATGTGTCGTACTAATGCTACTCCGACGTCGTTTAACGATAGGCTGCAGTTTGAAACGCAGTCCAATTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGGTTGA

Protein sequence

MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG*

Homology

[Close]

BLAST of CsGy5G017180 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQS-SVNDPHTLPITDTPRSTEN----- 76
           I LI I ++  ++  Y+ +++ +C R    S  ++ ++N       + T R + N     
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 77  -SVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPC 136
            S++  I  +KY+         G   VDG   C++CLSEFEE E ++ LP+C H++H+PC
Sbjct: 119 ESMIKSITVYKYK--------SGDGFVDG-SDCSVCLSEFEENESLRLLPKCNHAFHLPC 178

Query: 137 IDMWLYSHSSCPMCRTNAT 149
           ID WL SHS+CP+CR   T
Sbjct: 179 IDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of CsGy5G017180 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-16
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 27  AVVTIYHCIMACWCD-RRRFLSGDQSSVNDPHTLPIT--------DTPRSTENSVVHLIP 86
           A +T+   ++ C+CD RRR ++   +S       P           T    +  V+  +P
Sbjct: 49  AALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLP 108

Query: 87  AHKYEKRMAVDGGGGGKDVDGDGT-CAICLSEFEEGEEIKTLPECKHSYHMPCIDMWLYS 145
              Y +  A       ++ D DG  CA+CL+E E+GEE + LP C H +H  C+DMWL S
Sbjct: 109 VTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS 168

[Close]

BLAST of CsGy5G017180 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-16
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSS-----VNDPHTLPITD-------- 76
           I LI I ++  ++  Y+ +++ +C RRR  S   S+     ++  +T   T+        
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 77  TPRST---------ENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEE 136
            P  T         + S++  I  +KY K   +DG     D      C++CLSEF+E E 
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRK---MDGFVESSD------CSVCLSEFQENES 180

Query: 137 IKTLPECKHSYHMPCIDMWLYSHSSCPMCR 145
           ++ LP+C H++H+PCID WL SHS+CP+CR
Sbjct: 181 LRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of CsGy5G017180 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.2e-15
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 22  IGSAGAVVTIYHCIMACWCD-------RRRFLSGDQS--SVNDPHTLPITDTPRSTENSV 81
           + +A  +V+ Y  ++ C  +       RRR  S DQ+   +  PH     +  R  + S 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH-----EVNRGLDESA 111

Query: 82  VHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPCIDM 141
           +  IP  K++KR  V   G          C++CL+EF+E E+++ +P C H +H+ CID+
Sbjct: 112 IRAIPVFKFKKRDVV--AGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 142 WLYSHSSCPMCRTNAT 149
           WL  +++CP+CRT+ +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of CsGy5G017180 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 66  RSTENSVVHLIPAHKYEKRMAVDGG---GGGKDVDGDGT--CAICLSEFEEGEEIKTLPE 125
           R  + SV+  IP  K++KR   + G   G G++ +   +  C++CLSEF++ E+++ +P 
Sbjct: 97  RGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPN 156

Query: 126 CKHSYHMPCIDMWLYSHSSCPMCRTNAT-PTSF-NDRLQFETQSNSGIVV 169
           C H +H+ CID+WL ++++CP+CRT  +  TSF  DR+   + S   +V+
Sbjct: 157 CSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVM 206

[Close]

BLAST of CsGy5G017180 vs. NCBI nr
Match: XP_004142830.1 (RING-H2 finger protein ATL52 [Cucumis sativus])

HSP 1 Score: 368 bits (945), Expect = 9.04e-129
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175
           CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175

[Close]

BLAST of CsGy5G017180 vs. NCBI nr
Match: XP_008458935.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK22889.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 357 bits (915), Expect = 3.65e-124
Identity = 171/177 (96.61%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF SGDQSS NDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGG--KDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGG  KDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175
           PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQF+TQ NSGIVVHVLPTRG
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTRG 177

[Close]

BLAST of CsGy5G017180 vs. NCBI nr
Match: KAE8648538.1 (hypothetical protein Csa_008705 [Cucumis sativus])

HSP 1 Score: 356 bits (913), Expect = 5.24e-119
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 169
           CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVH 169

[Close]

BLAST of CsGy5G017180 vs. NCBI nr
Match: XP_038889238.1 (probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida])

HSP 1 Score: 315 bits (806), Expect = 1.24e-107
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63
           S  DA IYSRKLDIFL+AIGSAGAVVTIYHCIMACWCDRRRF SG Q+  NDPH+LPITD
Sbjct: 2   SDTDATIYSRKLDIFLVAIGSAGAVVTIYHCIMACWCDRRRFNSGGQTPANDPHSLPITD 61

Query: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGG-GGKDVDGDGTCAICLSEFEEGEEIKTLPECK 123
           TPRSTENSVVHLIPAHKYEKRMAVDGGG GG   +GDGTCAICLSEFEEGEEIKTLPEC 
Sbjct: 62  TPRSTENSVVHLIPAHKYEKRMAVDGGGCGGDHGEGDGTCAICLSEFEEGEEIKTLPECM 121

Query: 124 HSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLP 172
           HSYH+PCIDMWLYSHSSCPMCRTNATPTSF+DRLQFETQ +SGIVVHVLP
Sbjct: 122 HSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPSSGIVVHVLP 171

[Close]

BLAST of CsGy5G017180 vs. NCBI nr
Match: XP_022939139.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290 bits (742), Expect = 6.80e-98
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+  ND H++ + +
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123
           TPRSTENSVVHLIPAHKYEK+ AVD GG     DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121

Query: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQFETQ +SGI+VHV PTR
Sbjct: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168

[Close]

BLAST of CsGy5G017180 vs. ExPASy TrEMBL
Match: A0A0A0KNT5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE=3 SV=1)

HSP 1 Score: 368 bits (945), Expect = 4.38e-129
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPE 120

Query: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175
           CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG
Sbjct: 121 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175

[Close]

BLAST of CsGy5G017180 vs. ExPASy TrEMBL
Match: A0A5D3DI14 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00280 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 1.77e-124
Identity = 171/177 (96.61%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF SGDQSS NDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGG--KDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGG  KDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175
           PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQF+TQ NSGIVVHVLPTRG
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTRG 177

[Close]

BLAST of CsGy5G017180 vs. ExPASy TrEMBL
Match: A0A1S3C9L0 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 1.77e-124
Identity = 171/177 (96.61%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLP 60
           MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRF SGDQSS NDPHTLP
Sbjct: 1   MSSSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLP 60

Query: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGG--KDVDGDGTCAICLSEFEEGEEIKTL 120
           ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGG  KDVDGDGTCAICLSEFEEGEEIKTL
Sbjct: 61  ITDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTL 120

Query: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTRG 175
           PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQF+TQ NSGIVVHVLPTRG
Sbjct: 121 PECKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTRG 177

[Close]

BLAST of CsGy5G017180 vs. ExPASy TrEMBL
Match: A0A6J1FG87 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 3.29e-98
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63
           S+ DAA+YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GDQ+  ND H++ + +
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123
           TPRSTENSVVHLIPAHKYEK+ AVD GG     DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGG----CDGDGTCAICLSEFEEGEEIRTLPECLH 121

Query: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174
           SYH+PCIDMWLYSHSSCPMCRT+ATPTS +DRLQFETQ +SGI+VHV PTR
Sbjct: 122 SYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTR 168

[Close]

BLAST of CsGy5G017180 vs. ExPASy TrEMBL
Match: A0A6J1BX43 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111006127 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 2.92e-72
Identity = 118/178 (66.29%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSG--DQSSVNDPHTLPI 63
           S  +A  YS KLDIFLIA+GSAG VVTIYHCIMACWCDRRR   G     +  D H+LP 
Sbjct: 7   SPSEAIAYSHKLDIFLIAVGSAGIVVTIYHCIMACWCDRRRPSGGGGQTPAARDLHSLPG 66

Query: 64  TDTPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123
            +TPRSTENSVVHLIPAHKYEKRM         +V GDGTCAICLSEFEEGE+++TLPEC
Sbjct: 67  LETPRSTENSVVHLIPAHKYEKRMDH------LEV-GDGTCAICLSEFEEGEDLRTLPEC 126

Query: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTS-----FNDRLQFETQSNSGIVVHVLPTR 174
            HSYH+PCIDMWLYSHSSCPMCR +ATPT      F D L     S S +VVHV  TR
Sbjct: 127 MHSYHVPCIDMWLYSHSSCPMCRADATPTPSSPAVFRDGLD----SESVVVVHVRATR 173

[Close]

BLAST of CsGy5G017180 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 7.2e-18
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQS-SVNDPHTLPITDTPRSTEN----- 76
           I LI I ++  ++  Y+ +++ +C R    S  ++ ++N       + T R + N     
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLN 118

Query: 77  -SVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPC 136
            S++  I  +KY+         G   VDG   C++CLSEFEE E ++ LP+C H++H+PC
Sbjct: 119 ESMIKSITVYKYK--------SGDGFVDG-SDCSVCLSEFEENESLRLLPKCNHAFHLPC 178

Query: 137 IDMWLYSHSSCPMCRTNAT 149
           ID WL SHS+CP+CR   T
Sbjct: 179 IDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of CsGy5G017180 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-17
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 17  IFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSS-----VNDPHTLPITD-------- 76
           I LI I ++  ++  Y+ +++ +C RRR  S   S+     ++  +T   T+        
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 77  TPRST---------ENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEE 136
            P  T         + S++  I  +KY K   +DG     D      C++CLSEF+E E 
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRK---MDGFVESSD------CSVCLSEFQENES 180

Query: 137 IKTLPECKHSYHMPCIDMWLYSHSSCPMCR 145
           ++ LP+C H++H+PCID WL SHS+CP+CR
Sbjct: 181 LRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of CsGy5G017180 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-16
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 22  IGSAGAVVTIYHCIMACWCD-------RRRFLSGDQS--SVNDPHTLPITDTPRSTENSV 81
           + +A  +V+ Y  ++ C  +       RRR  S DQ+   +  PH     +  R  + S 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH-----EVNRGLDESA 111

Query: 82  VHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKHSYHMPCIDM 141
           +  IP  K++KR  V   G          C++CL+EF+E E+++ +P C H +H+ CID+
Sbjct: 112 IRAIPVFKFKKRDVV--AGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 142 WLYSHSSCPMCRTNAT 149
           WL  +++CP+CRT+ +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of CsGy5G017180 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 55  DPHTLPITDTPRSTENSVVHLIPAHKYEKRMAV---DGGGGGKDVDGDGTCAICLSEFEE 114
           D   L   D     + +V++  P   + K  +    DG GGG    GD TC+ICL E++E
Sbjct: 92  DNEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGG----GDTTCSICLCEYKE 151

Query: 115 GEEIKTLPECKHSYHMPCIDMWLYSHSSCPMCRTNATPT 151
            E ++ +PECKH +H+ C+D WL  + SCP+CR +  PT
Sbjct: 152 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPT 186

[Close]

BLAST of CsGy5G017180 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 66  RSTENSVVHLIPAHKYEKRMAVDGG---GGGKDVDGDGT--CAICLSEFEEGEEIKTLPE 125
           R  + SV+  IP  K++KR   + G   G G++ +   +  C++CLSEF++ E+++ +P 
Sbjct: 97  RGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPN 156

Query: 126 CKHSYHMPCIDMWLYSHSSCPMCRTNAT-PTSF-NDRLQFETQSNSGIVV 169
           C H +H+ CID+WL ++++CP+CRT  +  TSF  DR+   + S   +V+
Sbjct: 157 CSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVM 206

The following BLAST results are available for this feature:

BLAST of CsGy5G017180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	1.0e-16	34.53	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LRB7	5.0e-16	34.38	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9SRQ8	6.6e-16	32.67	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
P93823	7.2e-15	30.88	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LSW9	1.6e-14	35.45	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]

BLAST of CsGy5G017180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142830.1	9.04e-129	100.00	RING-H2 finger protein ATL52 [Cucumis sativus]	[more]
XP_008458935.1	3.65e-124	96.61	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H...	[more]
KAE8648538.1	5.24e-119	100.00	hypothetical protein Csa_008705 [Cucumis sativus]	[more]
XP_038889238.1	1.24e-107	88.24	probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida]	[more]
XP_022939139.1	6.80e-98	78.95	RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 fin...	[more]

BLAST of CsGy5G017180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNT5	4.38e-129	100.00	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE...	[more]
A0A5D3DI14	1.77e-124	96.61	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C9L0	1.77e-124	96.61	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 ...	[more]
A0A6J1FG87	3.29e-98	78.95	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137...	[more]
A0A6J1BX43	2.92e-72	66.29	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11100612...	[more]

BLAST of CsGy5G017180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	7.2e-18	34.53	RING/U-box superfamily protein	[more]
AT3G03550.1	4.7e-17	32.67	RING/U-box superfamily protein	[more]
AT1G04360.1	5.2e-16	30.88	RING/U-box superfamily protein	[more]
AT2G46160.1	1.1e-15	38.38	RING/U-box superfamily protein	[more]
AT5G43420.1	1.1e-15	35.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 e-value: 2.6E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 e-value: 1.0E-12 score: 48.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..144 score: 12.386007
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 57..150 e-value: 1.9E-21 score: 77.6
None	No IPR available	PANTHER	PTHR45676:SF43	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 10..158
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 101..144 e-value: 1.59972E-16 score: 67.3351
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..149
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 10..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G017180.1	CsGy5G017180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane