CsGy5G016430 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G016430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RRM domain-containing protein
Location	Gy14Chr5: 22714812 .. 22718817 (-)
RNA-Seq Expression	CsGy5G016430
Synteny	CsGy5G016430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCAACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCTCAACTTGCCTCTTATCCAGGCCTCTGGACCAATGGGCTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTTCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGTCAGCCTCAATCTCTCTCAATTTTTAACTCTTTATTCTCTGATTCTGCAAACTGCTGATGAATTGAAATGTTTGTTATTGTTTAGCTCATAGTTTTTGTTTTTGTTTTTGTTTTTCTGTAAATTAAATTTGTGGGTGTATACATTTGCCCAGATAGATTATATCATTGGTGGATAACGGTCCGTTGCTCTTATCAATTGATGTCGTAGCTATGGTCTAAAGTGAACCTAGCTATGTCAGTGACATTCTTGGACTCCAAATAAAATTTGTGAGCTTTGGAAATGAATCTCTATTTCGGATAAAGTGTCTAAGAAGCAGTAGACAAGTAGAGCTTTATCTAATCAAGTGAAGTTGATAGGAGTAAGTGTTTGTTTGAGAGGAGGAGATTAAGGGTGCGATAGTGGTAAATACCAAGTAGATTGTACAATTTGATCTGTGGTAGCTGGGTTTACTCTGGGCCTTGATTAGAGCAAATTTTTGATGGTGATTTGGAGTGGGACAGATGAAGGGAGGGCTGTTAGCTGCAAACGAAGTTTCTAGAGAAGGGAGAGATCCACTAGTATATAAGTGAGGACAATTATCTTTTTTTGGTATGCTATCTTTCAAGTGGTTTCCAAAGTAAAATCGTGAGGACTTATGACCAAAACATAGAATATCATATATCATTGTGGAGATGTGTGAAAGATTTGTTTTCGAAGACAATGGGTGACAAAATTCAACATGAGAGAGTGGAGTTTTGAGCAAGTGGAAAAAAGCATACGTTTGTCCCAATCTAATCAAAATCTTGAGGCACCTCGTGTGTCCATTGGTGGGTACACCGGGAATTCTTGGTGTACTAGTTTTATGGACTAGTAAACTATTCTTCAATTGAGGTACAACTTGTCCCCAAAAATTTGTTTTGCTGTGAATGGACAGAAATGTCGAAAGTGGGCTCAATGGTTTACAAGTAAATAAGCCATTTTTTTGCTTCATATTTGTCCCAATGCCTATCCTTTATTCCTTTTATATTTTGTTTATGGACGTTGGCCTATGCTAAAATTGAGGGTTCGCTAAAATTGAGGGTTCAATCATGACCTTCTACGTAGTTAAATATGGAACCCCTTTAGTTATGTGAAATCTTGAATATGGAACCCCTTTAGTTATGTGAAATCTTGATTTCGACCCATTCAAAATATATGAAAAATAAATTACATAGGTAAGATTTGAACTTGTGTTGGAAAGGGCTCATAAACAGAAACCACTAAGCTACCAGTATTCAAAGTTAAGTAGGTTTCTTTATATATGAGGATAAAGTTGAGAGGGCCGAGCCTGATTTGGTCTGGGTGAGAACACATTTCTTCCCATTAGCATAAAAATTATGCCCTAATAAGAAATCTGTATAAGCTCTCTAATTTCAATTAGAATTGTGTTTTATGCACAACTAAATATCATTGATGCACAAAATGGACCATTGTAATTCTACCCAGACCCACAAATTTAAAAATATTAAAATATTTTCTTTCGACATTTTTTCACTAGTCATATTTTTTTAGAAAAATTGCATAAAATGACAAATAAATTTAGAAAAAATTAGCTCATAGCATACTTTTTTTGCATATTGCGAATATGACAAATATGACAAGTAACTAATGATATCGACGACTATCGGAGGGCTATCACAGGACTATCTGAAGATTATCGTCTTTTAAATTTGCTACTTTTGTAATTTAGAAAATGTAGTGACATAGGTCCTATTATCATAATTTTTTTTGTTATTTTTGCAAATGCCCTATTTCTTATGACTAATTGGGGCCATAAGTGAGGAAAATACTTTAATTAACAATTTCCCTAAAGAAAACACTAAGAAAGAAGAATTACAATACTTCATTTCAAGTTTAAGAGAATGACATTACATTTTAAAGTTGGTACATATAACGTTTCTTTATGTTTTTTGGTTTATGAGATCTAATAGCATAATCAATCCCCCAATCTTTAAGTCTGGAATCAATATATTCATTGTTTAGCATCTTCATTTTGTGTAGGTAAAGCCTTACAACATGTTTTTGCTATCTGCGTGTGAAAATCATTGATTTCTATCATTATGTTAGTTCTTTGAAGATGGAGTAACCCATGATATCTCCTATAGTTTTCAACCTCTATCACTGTTGGCTATGGTTTCTTTGATATCAGTGATAATTGTTTTTTATTTTTTTGTTAGTTATTTGTTCATTTTTTGGTTTTGATGATCCCTTGTATTCCTAAAATTTTTTTGCATCCCTTGGATGTTAGAATTGTATCATGTTTAATCATTAGGAGCAAGAATGAGTCTTTAAAATTCATCCAGATATTTTATTGGACAATGGGGCTTGGGTTTTTTTTTTTCTTTGTTCTGTTAATGAGTTTAAAGCTCCCATTGTTGTCTATTTATACTGGTGTGGGATTTCATGTCATGGGGTTAGTTGTTCACTTTTATGCAAATTGGCATATCATAATCTCTCCCTGGTTTTCCTTTCCCTTTGTGATTGAATAACAGCAAAAAGGAATATAACTTTTAGGAAATGTGTAAGCAGATTTCCAAAATACCCCTCATGATATTTGATATTTGACGATGACAAGGTGGAGCCATGGATGTATATGCACTTTTTAGAAGCTTTATAGGTGAGTGTGAGAGTCAAGTGACATACACTTTTTAGTTTATTTTGAAAGTCAAAGTTTGTTGATGACATTGTGAATGTTGATTCAAAATCATACGTGGCTAGCCTTGAGAAGGTATCCTCTTGGTATCTATTATTTCTATTTTTTTAGGTCACTCTATTGCTAAAGTTGATATAAAATTTATTTTGAAATCACTTTCACAACATATCTATTGAATTTACTGATATCAATCTTGTCTTTCATGTGCACACAAAATCATGGAGGGTTTTTTTCAAGCCTATAGATCCATTGAGATGGTAACAGGACCGAAAACAAATTATTGAAAATTTCTATTGAAAAGTCTAACGTTTTAAGTTAGTGAGCATGGAAAATACAAGTCTTTCTCTGCCCCTTGGGATTTTTTTCCTATCAAATTTTTGTGCTCCATTTTTGGTGCATTTCTTTTCCCCTTTGTGGATCGAGAACAAAACCTATTTGTATTTAAAGAAATAGAGAGAAAGGAATCAGCCTTGGACTGAGAAGACACTCGCTTGCAAGAAACTAAAGAAGAATTTTCCAATTGTTCACAATATCATGAAAAGGCTAGTTACAAAAAAAATTTCTTGTGATTAAGATATCAAAGGAAGATATACACTATACACTATCCAATCTTCTAATTTTGCTGAAAAAGTAAGTGAAGTAAAGACATTGAAGTAGCGAGATTATACCAGAAGAATAAAACCATTCCAATTAAGATAAATCTTGAATAGAATATCCATCAGCATGCCATGAAGTCTTGAGACAAGCCGAAGTTATCTGATCTGACCACGGGAGATACTTGATGTAGTAACATCTTCTTAGAAGTCTTATTGTAATCTTATTCTTTTCTGCATATGTACAGGGTATGGATAG

mRNA sequence

ATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCAACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCTCAACTTGCCTCTTATCCAGGCCTCTGGACCAATGGGCTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTTCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGGTATGGATAG

Coding sequence (CDS)

ATGTTCGATTCTACGCCCCTTCACTGCCCTTTCACCACGATTTGCCCGTTGCTGCAACACAGTTGCCATTACAACTCTTCAATTTCCACAAAATTCCGCCCCCCCCACCTCAACTTGCCTCTTATCCAGGCCTCTGGACCAATGGGCTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTTCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAGGGTATGGATAG

Protein sequence

MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG*

Homology

[Close]

BLAST of CsGy5G016430 vs. NCBI nr
Match: KAE8648511.1 (hypothetical protein Csa_008404 [Cucumis sativus])

HSP 1 Score: 335 bits (858), Expect = 6.74e-116
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGK
Sbjct: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 120
           GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI
Sbjct: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 120

Query: 121 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG 163
           EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG
Sbjct: 121 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG 163

[Close]

BLAST of CsGy5G016430 vs. NCBI nr
Match: XP_031741253.1 (uncharacterized protein LOC101210443 [Cucumis sativus] >XP_031741254.1 uncharacterized protein LOC101210443 [Cucumis sativus] >XP_031741255.1 uncharacterized protein LOC101210443 [Cucumis sativus])

HSP 1 Score: 327 bits (838), Expect = 4.51e-109
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGK
Sbjct: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 120
           GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI
Sbjct: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 120

Query: 121 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160
           EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
Sbjct: 121 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160

[Close]

BLAST of CsGy5G016430 vs. NCBI nr
Match: KAA0040563.1 (glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK05606.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (737), Expect = 3.15e-96
Identity = 145/168 (86.31%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGK
Sbjct: 1   MLDSTPLHCRFTTIRPLLQHSCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPVFAMKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------ILLPLKNTKEWHAARPRGFGE 120
           GGIALT+PSDSDI FDEFFDE EDNFQDED+        ILLPLKNT+EWHAARPRGFGE
Sbjct: 61  GGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNTREWHAARPRGFGE 120

Query: 121 GKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160
           GKVYDTSIED LLQEMEQIREAQAANINKLK+QSSS PNSSRNVVEIA
Sbjct: 121 GKVYDTSIEDKLLQEMEQIREAQAANINKLKNQSSSKPNSSRNVVEIA 168

[Close]

BLAST of CsGy5G016430 vs. NCBI nr
Match: XP_008465688.1 (PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465689.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465690.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465692.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_016903478.1 PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo])

HSP 1 Score: 286 bits (731), Expect = 9.26e-93
Identity = 144/168 (85.71%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGK
Sbjct: 1   MLDSTPLHCRFTTIRPLLQHSCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPVFAMKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------ILLPLKNTKEWHAARPRGFGE 120
           GGIALT+PSDSDI FDEFFDE EDNFQDED+        ILLPLKNT+EWHAARPRGFGE
Sbjct: 61  GGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNTREWHAARPRGFGE 120

Query: 121 GKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160
           GKVYDTSIED LLQEMEQIREAQAANINKLK+Q SS PNSSRNVVEIA
Sbjct: 121 GKVYDTSIEDKLLQEMEQIREAQAANINKLKNQFSSKPNSSRNVVEIA 168

[Close]

BLAST of CsGy5G016430 vs. NCBI nr
Match: XP_011655304.2 (uncharacterized protein LOC105435514 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 4.96e-76
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 48  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 107
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60

Query: 108 RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG 163
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIAGYG
Sbjct: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAGYG 116

[Close]

BLAST of CsGy5G016430 vs. ExPASy TrEMBL
Match: A0A0A0KS07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488780 PE=4 SV=1)

HSP 1 Score: 333 bits (853), Expect = 7.67e-115
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGK
Sbjct: 41  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGK 100

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 120
           GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI
Sbjct: 101 GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 160

Query: 121 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGYG 163
           EDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIAGYG
Sbjct: 161 EDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAGYG 203

[Close]

BLAST of CsGy5G016430 vs. ExPASy TrEMBL
Match: A0A0A0KQN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1)

HSP 1 Score: 327 bits (838), Expect = 7.52e-109
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNL LIQASGPMGFPVFAVKRLGK
Sbjct: 41  MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLSLIQASGPMGFPVFAVKRLGK 100

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 120
           GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI
Sbjct: 101 GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSI 160

Query: 121 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160
           EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA
Sbjct: 161 EDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 200

[Close]

BLAST of CsGy5G016430 vs. ExPASy TrEMBL
Match: A0A5D3C5E5 (Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00620 PE=4 SV=1)

HSP 1 Score: 288 bits (737), Expect = 1.53e-96
Identity = 145/168 (86.31%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGK
Sbjct: 1   MLDSTPLHCRFTTIRPLLQHSCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPVFAMKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------ILLPLKNTKEWHAARPRGFGE 120
           GGIALT+PSDSDI FDEFFDE EDNFQDED+        ILLPLKNT+EWHAARPRGFGE
Sbjct: 61  GGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNTREWHAARPRGFGE 120

Query: 121 GKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160
           GKVYDTSIED LLQEMEQIREAQAANINKLK+QSSS PNSSRNVVEIA
Sbjct: 121 GKVYDTSIEDKLLQEMEQIREAQAANINKLKNQSSSKPNSSRNVVEIA 168

[Close]

BLAST of CsGy5G016430 vs. ExPASy TrEMBL
Match: A0A1S3CPG6 (uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 4.48e-93
Identity = 144/168 (85.71%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           M DSTPLHC FTTI PLLQHSCHYNSS STKFRPPHLNL LIQ SGPMGFPVFA+KRLGK
Sbjct: 1   MLDSTPLHCRFTTIRPLLQHSCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPVFAMKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDD--------ILLPLKNTKEWHAARPRGFGE 120
           GGIALT+PSDSDI FDEFFDE EDNFQDED+        ILLPLKNT+EWHAARPRGFGE
Sbjct: 61  GGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNTREWHAARPRGFGE 120

Query: 121 GKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160
           GKVYDTSIED LLQEMEQIREAQAANINKLK+Q SS PNSSRNVVEIA
Sbjct: 121 GKVYDTSIEDKLLQEMEQIREAQAANINKLKNQFSSKPNSSRNVVEIA 168

[Close]

BLAST of CsGy5G016430 vs. ExPASy TrEMBL
Match: A0A5D3C312 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00510 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 5.20e-51
Identity = 81/102 (79.41%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   MFDSTPLHCPFTTICPLLQHSCHYNSSISTKFRPPHLNLPLIQASGPMGFPVFAVKRLGK 60
           M DSTPLHC FTTI PLLQH CHYNSS STKFRPPHLNL LIQ SGPMGFP FA+KRLGK
Sbjct: 1   MLDSTPLHCRFTTIWPLLQHRCHYNSSNSTKFRPPHLNLSLIQGSGPMGFPAFAMKRLGK 60

Query: 61  GGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEW 102
           G IALTEPSDSD+ FDEFFD       DED ILLPLKNT+EW
Sbjct: 61  GDIALTEPSDSDVDFDEFFD------ADEDKILLPLKNTREW 96

[Close]

BLAST of CsGy5G016430 vs. TAIR 10
Match: AT1G70200.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 49  GFPVFAVKRLGKGGIALTEPSDSDIGFDEFF------DEGEDNFQDEDDILLPLKNTKEW 108
           GF  FAV +   G   + E  D D   DE +      DEGE+  +DE +  LP+   K+W
Sbjct: 62  GFCSFAVNKRRSGDSVIVESDDDDEEDDEDWGEFDGEDEGEEEEEDEGE-FLPMDKMKKW 121

Query: 109 HAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIAGY 164
              +PRGFG GK Y+T IED LL E+EQ  +AQAAN+NKLK+    +    R+   + G 
Sbjct: 122 LEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKLKNDPLKSQQLKRDDNLLKGT 181

The following BLAST results are available for this feature:

BLAST of CsGy5G016430 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G016430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648511.1	6.74e-116	99.39	hypothetical protein Csa_008404 [Cucumis sativus]	[more]
XP_031741253.1	4.51e-109	99.38	uncharacterized protein LOC101210443 [Cucumis sativus] >XP_031741254.1 uncharact...	[more]
KAA0040563.1	3.15e-96	86.31	glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK05606.1 glutamic ...	[more]
XP_008465688.1	9.26e-93	85.71	PREDICTED: uncharacterized protein LOC103503317 [Cucumis melo] >XP_008465689.1 P...	[more]
XP_011655304.2	4.96e-76	99.14	uncharacterized protein LOC105435514 [Cucumis sativus]	[more]

BLAST of CsGy5G016430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS07	7.67e-115	98.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488780 PE=4 SV=1	[more]
A0A0A0KQN3	7.52e-109	99.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1	[more]
A0A5D3C5E5	1.53e-96	86.31	Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CPG6	4.48e-93	85.71	uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=...	[more]
A0A5D3C312	5.20e-51	79.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy5G016430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70200.1	1.1e-15	41.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..156
None	No IPR available	PANTHER	PTHR37200	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 13..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G016430.2	CsGy5G016430.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding