CsGy5G014900 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G014900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L16, chloroplastic
Location	Gy14Chr5: 20629654 .. 20630013 (-)
RNA-Seq Expression	CsGy5G014900
Synteny	CsGy5G014900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG

mRNA sequence

ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG

Coding sequence (CDS)

ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCCGGACGAAGGGCAATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAG

Protein sequence

MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG*

Homology

[Close]

BLAST of CsGy5G014900 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-64
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 120
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 135

[Close]

BLAST of CsGy5G014900 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.4e-62
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTL
Sbjct: 18  MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTL 77

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 120
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFI SG
Sbjct: 78  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFIISG 136

[Close]

BLAST of CsGy5G014900 vs. ExPASy Swiss-Prot
Match: Q2L940 (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.7e-61
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17  MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 120
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPI+TQFI SG
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIKTQFIISG 135

[Close]

BLAST of CsGy5G014900 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-61
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGI++RGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 120
           RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAASKMPIRTQFI SG
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135

[Close]

BLAST of CsGy5G014900 vs. ExPASy Swiss-Prot
Match: Q0ZIY1 (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-61
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17  MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 120
           RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAASKMPIRTQFI SG
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135

[Close]

BLAST of CsGy5G014900 vs. NCBI nr
Match: ASY96370.1 (ribosomal protein L16 [Cucumis melo subsp. agrestis] >ASY96630.1 ribosomal protein L16 [Cucumis melo var. conomon] >ASY96718.1 ribosomal protein L16 [Cucumis melo var. makuwa] >ASY96805.1 ribosomal protein L16 [Cucumis melo var. momordica] >ASY96892.1 ribosomal protein L16 [Cucumis melo var. dudaim] >ASY96979.1 ribosomal protein L16 [Cucumis melo var. cantalupo] >ASY97153.1 ribosomal protein L16 [Cucumis melo var. inodorus] >ASY97327.1 ribosomal protein L16 [Cucumis melo var. flexuosus] >ASY97502.1 ribosomal protein L16 [Cucumis sativus var. hardwickii] >QCY72880.1 ribosomal protein L16 [Cucumis hystrix] >QDH07780.1 ribosomal protein L16 [Cucumis sativus] >QRW36592.1 ribosomal protein L16 [Cucumis melo])

HSP 1 Score: 241 bits (616), Expect = 2.02e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. NCBI nr
Match: ABI97454.1 (ribosomal protein L16, partial [Cucumis sativus] >ABI98783.1 ribosomal protein L16, partial [Cucumis sativus] >ARQ16116.1 ribosomal protein L16, partial [Cucumis sativus] >ARQ16199.1 ribosomal protein L16, partial [Cucumis sativus] >ARQ16282.1 ribosomal protein L16, partial [Cucumis sativus])

HSP 1 Score: 241 bits (616), Expect = 3.22e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 15  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 74

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 75  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 133

[Close]

BLAST of CsGy5G014900 vs. NCBI nr
Match: YP_004841821.1 (ribosomal protein L16 [Cucumis melo subsp. melo] >YP_009004080.1 ribosomal protein L16 [Cucumis hystrix] >YP_009860111.1 ribosomal protein L16 [Cucumis melo subsp. agrestis] >YP_247637.1 ribosomal protein L16 [Cucumis sativus] >Q4VZN1.1 RecName: Full=50S ribosomal protein L16, chloroplastic [Cucumis sativus] >ALF03339.1 ribosomal protein L16 [Cucumis sativus var. hardwickii] >AVE15369.1 ribosomal protein L16 [Cucumis sativus var. sativus] >QJF46422.1 ribosomal protein L16 [Cucumis melo] >AAZ94687.1 ribosomal protein L16 [Cucumis sativus] >AEM76930.1 ribosomal protein L16 [Cucumis melo subsp. melo])

HSP 1 Score: 241 bits (616), Expect = 3.44e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 17  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 77  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 135

[Close]

BLAST of CsGy5G014900 vs. NCBI nr
Match: QHB76001.1 (ribosomal protein L16 [Cucumis melo subsp. melo])

HSP 1 Score: 240 bits (612), Expect = 8.25e-80
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. NCBI nr
Match: BAH95844.1 (ribosomal protein L16, partial [Asparagus officinalis])

HSP 1 Score: 239 bits (611), Expect = 1.13e-79
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 2   KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 61
           KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR
Sbjct: 1   KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 60

Query: 62  PTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           PTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  PTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 118

[Close]

BLAST of CsGy5G014900 vs. ExPASy TrEMBL
Match: A0A249S030 (50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 9.80e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. ExPASy TrEMBL
Match: A0A249RY39 (50S ribosomal protein L16, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 9.80e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. ExPASy TrEMBL
Match: A0A286NFT8 (50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 9.80e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. ExPASy TrEMBL
Match: A0A249RYN9 (50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 9.80e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. ExPASy TrEMBL
Match: A0A286SBA5 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 9.80e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL
Sbjct: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119
           RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG
Sbjct: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITSG 119

[Close]

BLAST of CsGy5G014900 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 220.3 bits (560), Expect = 8.3e-58
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTL 60
           +KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+
Sbjct: 17  LKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTV 76

Query: 61  RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITS 119
           RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV ENIARKAISIAASKMPI+TQFI S
Sbjct: 77  RPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQFIIS 134

[Close]

BLAST of CsGy5G014900 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-41
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 2   KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLR 61
           KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+R
Sbjct: 847 KGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVR 906

Query: 62  PTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFITS 119
           P ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +AR+AISIAASK+P +T+FI S
Sbjct: 907 PPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAASKLPAKTKFIIS 961

[Close]

BLAST of CsGy5G014900 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-22
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 2   KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIF 61
           +G    G  + FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F
Sbjct: 54  RGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVF 113

Query: 62  PDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRT 117
            D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV+   AR+A ++AA K    T
Sbjct: 114 ADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAATLAAHKPCSST 173

The following BLAST results are available for this feature:

BLAST of CsGy5G014900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN1	5.8e-64	100.00	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=...	[more]
Q09ME0	5.4e-62	96.64	50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=...	[more]
Q2L940	2.7e-61	94.96	50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 ...	[more]
B1NWI7	3.5e-61	94.96	50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P...	[more]
Q0ZIY1	3.5e-61	94.96	50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=...	[more]

BLAST of CsGy5G014900 vs. NCBI nr


Match Name	E-value	Identity	Description
ASY96370.1	2.02e-80	100.00	ribosomal protein L16 [Cucumis melo subsp. agrestis] >ASY96630.1 ribosomal prote...	[more]
ABI97454.1	3.22e-80	100.00	ribosomal protein L16, partial [Cucumis sativus] >ABI98783.1 ribosomal protein L...	[more]
YP_004841821.1	3.44e-80	100.00	ribosomal protein L16 [Cucumis melo subsp. melo] >YP_009004080.1 ribosomal prote...	[more]
QHB76001.1	8.25e-80	99.16	ribosomal protein L16 [Cucumis melo subsp. melo]	[more]
BAH95844.1	1.13e-79	100.00	ribosomal protein L16, partial [Asparagus officinalis]	[more]

BLAST of CsGy5G014900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249S030	9.80e-81	100.00	50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A249RY39	9.80e-81	100.00	50S ribosomal protein L16, chloroplastic OS=Cucumis melo subsp. agrestis OX=2176...	[more]
A0A286NFT8	9.80e-81	100.00	50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. flexuosus OX=11207...	[more]
A0A249RYN9	9.80e-81	100.00	50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A286SBA5	9.80e-81	100.00	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus var. hardwickii OX=3...	[more]

BLAST of CsGy5G014900 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00790.1	8.3e-58	88.98	ribosomal protein L16	[more]
AT2G28830.1	4.1e-41	70.09	PLANT U-BOX 12	[more]
ATMG00080.1	7.3e-22	43.09	ribosomal protein L16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 26..37 score: 71.5 coord: 72..101 score: 58.87 coord: 8..20 score: 47.69 coord: 42..71 score: 67.87
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 1..111 e-value: 6.0E-53 score: 176.3
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 1..117
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..119 e-value: 1.2E-55 score: 190.3
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..118
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..116 e-value: 9.0E-44 score: 148.7
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 7..116 e-value: 9.40225E-53 score: 159.579
None	No IPR available	PANTHER	PTHR12220:SF13	39S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 1..117
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 43..54
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 66..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G014900.1	CsGy5G014900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome