CsGy5G014220 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G014220
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description30S ribosomal protein S13
LocationGy14Chr5: 19502648 .. 19504687 (-)
RNA-Seq ExpressionCsGy5G014220
SyntenyCsGy5G014220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGATGAAGAAGATAAGGTAGGTATTGAAACTGATAGCAGAAGGCGCTGGGAGTGTGAGTTGAATCGTAATCCAGTTTGTGTTCGTAATGTGCTGATCCTGAATTTGAAACAGACGAGATTATGGCGCAAACTTCAGCAATCCCACTTGCTCATTCACTCTCCCTCATCTCCAATTCTCGGAACTTCAATCCTCTTTCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTAATTCTTTCTCTTCAATTTTACCCTCTTCTTCCTTTCAGTTTCTTCTGTTCTACAATTTCCATTTTCTTCTGCATTTTTTAGGATGTGCAGGGGCTTTACCCACTCCAAGCTTGTTTTTGTCTTCTCTTTATTCTTGCTCCCTCTCCCTCCCCTTTGCATCTCTACTACTATCTATTGCAGCTTCATTCTTTGAAACTATTCTTACACAACATACTTTACTCTCTGCACTTTTTTCTGTATTACACCACTACGCTTTATCTCTATTTGGAATTAATTTATCTCTATCTTTGTTGAACAATGTGATGAAACAAAACTTCTGCATTTCCTTTCCCTCAATTCCATTCTTAATATTTATCCCACTCACTTTCTGTTTCTCTCGCTCCGTCTGTGCATGATTGACTTTAAGGATTAAGCATTTATATAATTGGACTCAAAGAAGAGATTCAGTGGATTAGTGACTGCACCTTAATGGATTACAATTTGATGCTTGTTTCGTTAGCTTAGGAGTTTTTGTTTTGATTGATATTCGATAAACAAGGGTTCCATCTCAATACGAATCGGTAAGGAGAGAAATAACTCACCTTATCTTAGAACTGTGAGAGGTTACATAGTTTTTTGAAAGTGGGATTTTTGAAATTCCCCGTAAGATGGTATCTCTTTTAATATCTCTTTTGAGTTCACATTCTTGATCAAATCACAATTAATTTGATATTCAATCTCAAAACCAATCAACAACCAAAGGATTAACTCACTCATCTACTCGTGGGACCTTCTACAAATTTCAAGGCCACAAGTACCAAAGAATGATGGGTTGATGCATGTAACTTTAGAATAACCTACCAGTTGAAGCTATTTGGGTGATTGGCGGTTTAACAGTATTCATGTTCTTCTTGAATGGTCCGTCATTTTTCTTTCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATGTACACGGTATCGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAATATCTATCAGAGATGAGGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTCTCTTTCTCTACTTGTGTGATTTTGTTAAAATTACAAAAGTCGGTTCTCTCTTTACTTACAAATGCGATTGTTTGTTTTGCAGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTATCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAATTGCAGAACCTTGAAGGGTAAGAAGATTGCTATTGCAGGAAAGAAGAAGGCTCCTCGTTGATGTCCGAGTAAATCTCTTTTAAAATCTTTGAGATGTATTGTTTTTTAACTCTTGAAATTGCATCTAATTTCCTCATGGGAATATAGTTTCTTGCAAACACTCTGTTATGTTATTGCTGTGCCATATTCTACTTCACAGATGTGCTCACCTTCTTTGACAAATGCTCAATGTTCCATATATGAGTGGTGTTATCTTAACTGATCCATTTAGTTATGTACGCAACTTACCAAATTATTAAGTATGGATACAAAGATTATACAGATATGTTTACAAAATCTCTCTTTAAACCGAACTTTTATGATTGTTATTAGAAAAACACTGTCGTAACTGCACGCTGGTCTCAAGTAAGGCGAATAAATATCATCCGCAAATTTCTAGATACTAATTTACCATACTTGG

mRNA sequence

GGGATGAAGAAGATAAGGTAGGTATTGAAACTGATAGCAGAAGGCGCTGGGAGTGTGAGTTGAATCGTAATCCAGTTTGTGTTCGTAATGTGCTGATCCTGAATTTGAAACAGACGAGATTATGGCGCAAACTTCAGCAATCCCACTTGCTCATTCACTCTCCCTCATCTCCAATTCTCGGAACTTCAATCCTCTTTCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATGTACACGGTATCGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAATATCTATCAGAGATGAGGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTATCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAATTGCAGAACCTTGAAGGGTAAGAAGATTGCTATTGCAGGAAAGAAGAAGGCTCCTCGTTGATGTCCGAGTAAATCTCTTTTAAAATCTTTGAGATGTATTGTTTTTTAACTCTTGAAATTGCATCTAATTTCCTCATGGGAATATAGTTTCTTGCAAACACTCTGTTATGTTATTGCTGTGCCATATTCTACTTCACAGATGTGCTCACCTTCTTTGACAAATGCTCAATGTTCCATATATGAGTGGTGTTATCTTAACTGATCCATTTAGTTATGTACGCAACTTACCAAATTATTAAGTATGGATACAAAGATTATACAGATATGTTTACAAAATCTCTCTTTAAACCGAACTTTTATGATTGTTATTAGAAAAACACTGTCGTAACTGCACGCTGGTCTCAAGTAAGGCGAATAAATATCATCCGCAAATTTCTAGATACTAATTTACCATACTTGG

Coding sequence (CDS)

ATGGCGCAAACTTCAGCAATCCCACTTGCTCATTCACTCTCCCTCATCTCCAATTCTCGGAACTTCAATCCTCTTTCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATGTACACGGTATCGGTCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAATATCTATCAGAGATGAGGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTATCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAATTGCAGAACCTTGAAGGGTAAGAAGATTGCTATTGCAGGAAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR*
Homology
[Close]
BLAST of CsGy5G014220 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-65
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ  A+P+AHSLSLI N    NPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQY+HGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of CsGy5G014220 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-59
Identity = 118/169 (69.82%), Postives = 145/169 (85.80%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSR-NFNPLSNTLSF-PISNPQVRGLQIKCVRVGGVEIPNNKR 60
           MA T A P+A S+SLI N++ + +  S++L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           V+YSLQY+HGIGR+ A++IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKKAP 167
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]
BLAST of CsGy5G014220 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.8e-32
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 0 

Query: 26  SNTLSFPISNPQVR-----GLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ V+GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKIAIAGKKKAPR 168
           RGQRT  N RT KGK +AIAGKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of CsGy5G014220 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-28
Identity = 62/119 (52.10%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 47  RVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVENKI-TKDLSEEELISIRDEVSK 106
           R+ G++IP++KRV  +L Y++G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]
BLAST of CsGy5G014220 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 0 

Query: 35  NPQVRGLQIKCVRVG---GVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVENKITKDL 94
           N  V G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L VENK  KDL
Sbjct: 18  NLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDL 77

Query: 95  SEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRT 154
           S+ EL SIR+ +SKY+I  DL++     + RL  IQCYRGIRH+  LPCRGQRT  N RT
Sbjct: 78  SKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNART 137

Query: 155 LKGKK 157
            + +K
Sbjct: 138 RRSRK 142

[Close]
BLAST of CsGy5G014220 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 327 bits (839), Expect = 7.22e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 311 bits (797), Expect = 1.83e-106
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 310 bits (795), Expect = 3.70e-106
Identity = 157/167 (94.01%), Postives = 163/167 (97.60%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+ A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (797), Expect = 7.10e-106
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]
BLAST of CsGy5G014220 vs. NCBI nr
Match: XP_022993180.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 298 bits (764), Expect = 1.97e-101
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA T A+P+A SLSLI NSR  NPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 327 bits (839), Expect = 3.50e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 8.87e-107
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 3.44e-106
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]
BLAST of CsGy5G014220 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 298 bits (764), Expect = 9.53e-102
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA T A+P+A SLSLI NSR  NPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. ExPASy TrEMBL
Match: A0A6J1CJS2 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011934 PE=3 SV=1)

HSP 1 Score: 297 bits (760), Expect = 3.88e-101
Identity = 149/167 (89.22%), Postives = 160/167 (95.81%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+ A+P+A SLSLI N RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

[Close]
BLAST of CsGy5G014220 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 250.8 bits (639), Expect = 8.0e-67
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ  A+P+AHSLSLI N    NPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQY+HGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of CsGy5G014220 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 148.3 bits (373), Expect = 5.6e-36
Identity = 78/114 (68.42%), Postives = 92/114 (80.70%), Query Frame = 0 

Query: 1   MAQTSAIPLAHSLSLISNSRNFNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ  A+P+AHSLSLI N    NPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDL 113
           ++YSLQY+HGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]
BLAST of CsGy5G014220 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-33
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 0 

Query: 26  SNTLSFPISNPQVR-----GLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ V+GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKIAIAGKKKAPR 168
           RGQRT  N RT KGK +AIAGKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of CsGy5G014220 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 41.2 bits (95), Expect = 9.6e-04
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0 

Query: 46  VRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  + GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

[Close]
BLAST of CsGy5G014220 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 41.2 bits (95), Expect = 9.6e-04
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0 

Query: 46  VRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  + GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

The following BLAST results are available for this feature:
BLAST of CsGy5G014220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427321.1e-6575.7430S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821631.6e-5969.8230S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P... [more]
Q9CA194.8e-3249.66Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
B1VAC31.9e-2852.1030S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1[more]
Q8LPW22.4e-2851.20Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP... [more]
BLAST of CsGy5G014220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140327.17.22e-113100.0030S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe... [more]
XP_008465819.11.83e-10694.61PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo][more]
XP_038876079.13.70e-10694.0130S ribosomal protein S13, chloroplastic-like [Benincasa hispida][more]
KAA0047502.17.10e-10694.6130S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p... [more]
XP_022993180.11.97e-10190.4230S ribosomal protein S13, chloroplastic-like [Cucurbita maxima][more]
BLAST of CsGy5G014220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN283.50e-113100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1[more]
A0A1S3CPR48.87e-10794.6130S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408... [more]
A0A5A7TVL63.44e-10694.6130S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1JXU59.53e-10290.4230S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1CJS23.88e-10189.2230S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=... [more]
BLAST of CsGy5G014220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14320.18.0e-6775.74Ribosomal protein S13/S18 family [more]
AT5G14320.25.6e-3668.42Ribosomal protein S13/S18 family [more]
AT1G77750.13.4e-3349.66Ribosomal protein S13/S18 family [more]
AT1G22780.19.6e-0427.46Ribosomal protein S13/S18 family [more]
AT1G34030.19.6e-0427.46Ribosomal protein S13/S18 family [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 47..151
e-value: 1.9E-31
score: 109.1
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 45..161
score: 24.026272
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 48..154
score: 34.661545
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 115..167
e-value: 1.6E-25
score: 90.5
NoneNo IPR availableGENE3D1.10.8.50coord: 46..114
e-value: 7.5E-25
score: 88.9
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..165
IPR019980Ribosomal protein S13, bacterial-typeTIGRFAMTIGR03631TIGR03631coord: 47..156
e-value: 3.9E-40
score: 134.8
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 1..165
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 130..143
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 46..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G014220.2CsGy5G014220.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding