CsGy5G013765 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G013765
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	coiled-coil domain-containing protein 1 isoform X3
Location	Gy14Chr5: 18341068 .. 18343152 (-)
RNA-Seq Expression	CsGy5G013765
Synteny	CsGy5G013765

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGACGAAAAAGAAAATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGAGCGTTGATTGAAACTGCTATCTGTTTGTGCATTATTGGATTCACTGATTTTGTGGCATTTAGAAACTGGAGATTCGCAGATTGGATAGATACAATCCGGATTTTGGTTGAACTAGATCGTGATTCATGTTGAAGTACGTACTCTGTTCCTCACTCAATCAATTTAGCATTGTTTGATATTTGAGATAATCAAGATGGTTGAAAATAATCCAATTTTCTCTCACTTTTTTTTAGGAAAAAAAAAAACAAGTGATCTTAAATTTGATTTAACAAATTTAAAACTTTTATAAAATTGTTAAGAGTAAATCTTCCAAACCCTACAAAATTAAAGGAATTTGATAATATATATATGCTGTGAGAACAATTTTTTGAAGCCCTGTGCTCAACTCCAATGACGATTATTGTTGATGACATGCTTATGGTGACCAACTTGGACAATCATTTTGACCGTCAACTGCAAAACCAAATATAACCTAATGTCATTAACCATGACACCTACCTTTCAAACCCTACCTTTGATAACTAACTTTACCCAAATGTTTAAAGTACAAACTTTACCTCTTTCCCATACTTTGTCATCAATGATAACATTTTGGATATATAACTAACTAAGAGTCCGTTTAGTAATATTTCTGTTTTTCATTTTCTGTTTCTTTTCTAGAACAAAAAAGGAATATATTTGATACTTGTTTCTTGAAAAACAGAAACAGAAACTTGTATTTGATAACTGTTTTGCTTTCTTAATAATGTCCTACCTTATACATTCGATGAAATTTATATTTTTTCAAATTCTTTGTAATCCATTGGCTATGTTTTCTTGTCTGACCATAGTCCTCACCTCTTAATTCATCAATTTCAACAACCTCGTGACACAACGTTGTTCGGATGTTTTTTTGTGATATCTAAAATGTAGTACTAAAATTAGAAAAGAAAGAAAATCAATAAACTAGATAGTAGAAAGAGGCATAGATAATTCACCATTCAAGGTTGTTTTGTTTTACAAACGAGGATAGTCATTTCCCTGTACTTGTTCTTTACTCGGATGAGTACTGACAACTTATCTAAATTCCTTGCTTATCGGTCCCATTGCATCTACATATACATAAAACTTACAGCTCAATATATACAAATATGAAATAACTAAGATATTGAGCTTGGAACAACATAATCTAAGTAGCTTAAATTTAAGGATCTTATGTACACAGGCAATGGGCTTCAACTCCTTTTTGGTTCAACTGCTTCTCTTGAGCAACGATTTGTTTCAGATGGTTGATCTTCTTCAACCACATGGACTTCCTCTACATTAGAAAACATGACTTCAGAGTAAGACACGTGCCTATGGTTTCTTCATATTCTCCAGTCTACAGAAGTGATTTAAAACAAATATTTGTATGAAAGTTTGAAAGAAATGCCAGTTTTTCACAAAATATAGACTACAACAGCCTTGAATCAAACCAAAAGATAAGAAGGTAAGAGCAAGATCATGTATCATGTATCATGTATCATGTATCATGTATCAT

mRNA sequence

AATCGACGAAAAAGAAAATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGAGCGTTGATTGAAACTGCTATCTGTTTGTGCATTATTGGATTCACTGATTTTGTGGCATTTAGAAACTGGAGATTCGCAGATTGGATAGATACAATCCGGATTTTGGTTGAACTAGATCGTGATTCATGTTGAAGATCTTATGTACACAGGCAATGGGCTTCAACTCCTTTTTGGTTCAACTGCTTCTCTTGAGCAACGATTTGTTTCAGATGGTTGATCTTCTTCAACCACATGGACTTCCTCTACATTAGAAAACATGACTTCAGAGTAAGACACGTGCCTATGGTTTCTTCATATTCTCCAGTCTACAGAAGTGATTTAAAACAAATATTTGTATGAAAGTTTGAAAGAAATGCCAGTTTTTCACAAAATATAGACTACAACAGCCTTGAATCAAACCAAAAGATAAGAAGGTAAGAGCAAGATCATGTATCATGTATCATGTATCATGTATCATGTATCAT

Coding sequence (CDS)

ATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGA

Protein sequence

MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG*

Homology

[Close]

BLAST of CsGy5G013765 vs. NCBI nr
Match: XP_004150191.1 (uncharacterized protein LOC101219995 [Cucumis sativus] >XP_031740924.1 uncharacterized protein LOC116403668 [Cucumis sativus] >XP_031745568.1 uncharacterized protein LOC116405999 [Cucumis sativus] >KAE8648374.1 hypothetical protein Csa_023320 [Cucumis sativus])

HSP 1 Score: 340 bits (872), Expect = 2.09e-117
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60

Query: 61  RPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSS 120
           RPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSS
Sbjct: 61  RPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSS 120

Query: 121 IPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKK 180
           IPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKK
Sbjct: 121 IPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKK 180

Query: 181 GG 182
           GG
Sbjct: 181 GG 182

[Close]

BLAST of CsGy5G013765 vs. NCBI nr
Match: TYK15177.1 (transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (780), Expect = 3.12e-103
Identity = 169/192 (88.02%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 182
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsGy5G013765 vs. NCBI nr
Match: XP_016903615.1 (PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo])

HSP 1 Score: 302 bits (773), Expect = 3.64e-102
Identity = 167/192 (86.98%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLILKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 182
           DR+KERRKKK G
Sbjct: 181 DRMKERRKKKAG 192

[Close]

BLAST of CsGy5G013765 vs. NCBI nr
Match: KAA0066134.1 (transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 302 bits (773), Expect = 3.64e-102
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSIL DDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILDDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 182
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsGy5G013765 vs. NCBI nr
Match: XP_022993807.1 (glucosidase 2 subunit beta [Cucurbita maxima])

HSP 1 Score: 258 bits (658), Expect = 1.96e-84
Identity = 153/194 (78.87%), Postives = 161/194 (82.99%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MD RK  G GN+DEQ  +EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRS
Sbjct: 16  MDFRK-MGSGNEDEQ--VEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRS 75

Query: 61  RP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPS 120
           RP        PR+S PH QSDSS +PPP IENLVVDGESQSILGDDLAARFAALKASLPS
Sbjct: 76  RPSSAAACRNPRTSQPHHQSDSSSRPPP-IENLVVDGESQSILGDDLAARFAALKASLPS 135

Query: 121 SAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE------EEFTSSD 180
           S  P  SSIPND DS+DEEDEVEKLIQWAKDA RLDPSPPSEE DE+      EEF SSD
Sbjct: 136 SITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAVRLDPSPPSEEDDEDDEDDDDEEFNSSD 195

[Close]

BLAST of CsGy5G013765 vs. ExPASy TrEMBL
Match: A0A5D3CTC3 (Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00450 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 1.51e-103
Identity = 169/192 (88.02%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 182
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsGy5G013765 vs. ExPASy TrEMBL
Match: A0A5A7VFP6 (Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001330 PE=4 SV=1)

HSP 1 Score: 302 bits (773), Expect = 1.76e-102
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSIL DDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILDDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 182
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsGy5G013765 vs. ExPASy TrEMBL
Match: A0A1S4E6L5 (uncharacterized protein LOC103502866 OS=Cucumis melo OX=3656 GN=LOC103502866 PE=4 SV=1)

HSP 1 Score: 302 bits (773), Expect = 1.76e-102
Identity = 167/192 (86.98%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLILKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 182
           DR+KERRKKK G
Sbjct: 181 DRMKERRKKKAG 192

[Close]

BLAST of CsGy5G013765 vs. ExPASy TrEMBL
Match: A0A6J1JTW4 (glucosidase 2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111489706 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 9.51e-85
Identity = 153/194 (78.87%), Postives = 161/194 (82.99%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MD RK  G GN+DEQ  +EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRS
Sbjct: 16  MDFRK-MGSGNEDEQ--VEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRS 75

Query: 61  RP--------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPS 120
           RP        PR+S PH QSDSS +PPP IENLVVDGESQSILGDDLAARFAALKASLPS
Sbjct: 76  RPSSAAACRNPRTSQPHHQSDSSSRPPP-IENLVVDGESQSILGDDLAARFAALKASLPS 135

Query: 121 SAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE------EEFTSSD 180
           S  P  SSIPND DS+DEEDEVEKLIQWAKDA RLDPSPPSEE DE+      EEF SSD
Sbjct: 136 SITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAVRLDPSPPSEEDDEDDEDDDDEEFNSSD 195

[Close]

BLAST of CsGy5G013765 vs. ExPASy TrEMBL
Match: A0A6J1FGM0 (nucleolin OS=Cucurbita moschata OX=3662 GN=LOC111445226 PE=4 SV=1)

HSP 1 Score: 256 bits (655), Expect = 2.54e-84
Identity = 153/192 (79.69%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MD RK    GN+DEQ  +EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRS
Sbjct: 16  MDFRKMES-GNEDEQ--VEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRS 75

Query: 61  RP---------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLP 120
           RP         PR S PH QSDSS +PPP IENLVVDGESQSILGDDLAARFAALKASLP
Sbjct: 76  RPSSAAAASRNPRPSQPHHQSDSSSRPPP-IENLVVDGESQSILGDDLAARFAALKASLP 135

Query: 121 SSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEE---EEFTSSDED 180
           SS  P  SSIPND DS+DEEDEVEKLIQWAKDAARLDPSPPSEE DE+   EEF SSDED
Sbjct: 136 SSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDDDEEFNSSDED 195

[Close]

BLAST of CsGy5G013765 vs. TAIR 10
Match: AT4G24370.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.1 bits (261), Expect = 5.9e-23
Identity = 75/166 (45.18%), Postives = 101/166 (60.84%), Query Frame = 0


Query: 9   RGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHP 68
           R    E++++EQLLQAAQD+++LKLS+DSH SR S +YLD DL  RF AL+S+  +    
Sbjct: 2   RRGGKEEDEVEQLLQAAQDEMILKLSVDSHTSRSSSDYLDPDLHSRFLALKSQKKKDQQQ 61

Query: 69  HIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLP----SSAAPLSSSIPND 128
             +     QP    +++V +        +DL  RFAALK SLP    SS+  L   I  D
Sbjct: 62  QQKQRPRMQPKS--KDVVEE------TPEDLMLRFAALKTSLPSASSSSSVLLQDEIGED 121

Query: 129 ADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 171
            D   E+ EV+KLIQWA DAARLDPSP S+  DE+ +   SD++ D
Sbjct: 122 GDEIGEDAEVDKLIQWAIDAARLDPSPSSD--DEQSQNCDSDDEND 157

The following BLAST results are available for this feature:

BLAST of CsGy5G013765 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G013765 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150191.1	2.09e-117	100.00	uncharacterized protein LOC101219995 [Cucumis sativus] >XP_031740924.1 uncharact...	[more]
TYK15177.1	3.12e-103	88.02	transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. m...	[more]
XP_016903615.1	3.64e-102	86.98	PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]	[more]
KAA0066134.1	3.64e-102	87.50	transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. m...	[more]
XP_022993807.1	1.96e-84	78.87	glucosidase 2 subunit beta [Cucurbita maxima]	[more]

BLAST of CsGy5G013765 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTC3	1.51e-103	88.02	Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var....	[more]
A0A5A7VFP6	1.76e-102	87.50	Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var....	[more]
A0A1S4E6L5	1.76e-102	86.98	uncharacterized protein LOC103502866 OS=Cucumis melo OX=3656 GN=LOC103502866 PE=...	[more]
A0A6J1JTW4	9.51e-85	78.87	glucosidase 2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111489706 PE=4 SV=1	[more]
A0A6J1FGM0	2.54e-84	79.69	nucleolin OS=Cucurbita moschata OX=3662 GN=LOC111445226 PE=4 SV=1	[more]

BLAST of CsGy5G013765 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24370.1	5.9e-23	45.18	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G013765.1	CsGy5G013765.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity