CsGy5G013405 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G013405
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 17352554 .. 17353379 (+)
RNA-Seq Expression	CsGy5G013405
Synteny	CsGy5G013405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCCATCAGGTAAATTGGTTAAATTATTAGTGAGGCCAAAGTTGAGAGGAGTGGAGAAAAAATTGTCCCGTAAGGAACTAAAACAAAGAATGTAATTTGTGGATGAAAACGAAAAGAAGTGAAACGAAAAAAGAAGTAATATTTAATTGGGCAACAAACAACTCTGACACTCTTTTTGTCACACTGCTCCCATTCAAAAACTGAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTAAGTGACTCTCTTCTATGGCTTCCTCTTTTTGCTTTACATTCTACTATGTTTAGTCACCGTTCTGGGGGGATTCGTTTCCTCCTCCTTTTTTTTTCTTTTTCTTTTTTTAAATTTTCAGTCAAAATTTCATGACGAAAGAAACCGACCCTTTTCCACTTACCCTCCAAAAAGAGAAACAGTGAACTGAGCTTTCACATTCTCTGCCCTTTCTTGAGGATTATGATCATGTGGGTGTTTGGTATTTTTTGGTTATGGTGTTTATTTTATACCCACACAATCGGGTTCTTATATTTATTTATTCTTACTTCATTTTGGTTTTTTTTTTTTTTATCTATTTATTTATTTTTGGACGAATTACAGGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

mRNA sequence

ATGTGTACCCATCAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

Coding sequence (CDS)

ATGTGTACCCATCAGCCGCAACTTGCACAAACTAGCCGTCGAGATCAGTCAACCACACAGTTTGCGGACCAAATTCTTCCAGCAACTACCAACCTTCCCCCAAAAAGCCCACACCACCCTCAAACTCAACCCAATCAACCCCTCTTTTATACAATTCAAACACAAACACAGACCCCCATCTTCTCTCTGCTTCATTGCGGTTCTTCTGTCGTGCGATACAAAAGAGAAGCTAAGTGGGAGTTTCTTCCGTGTCGAAGCATTGCTTAG

Protein sequence

MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPIFSLLHCGSSVVRYKREAKWEFLPCRSIA*

Homology

[Close]

BLAST of CsGy5G013405 vs. NCBI nr
Match: KGN50903.1 (hypothetical protein Csa_023100 [Cucumis sativus])

HSP 1 Score: 186 bits (472), Expect = 1.95e-59
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60
          MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI
Sbjct: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60

Query: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88
          FSLLHCGSSVVRYKREAKWEFLPCRSIA
Sbjct: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88

[Close]

BLAST of CsGy5G013405 vs. ExPASy TrEMBL
Match: A0A0A0KMT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G320420 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 9.43e-60
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60
          MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI
Sbjct: 1  MCTHQPQLAQTSRRDQSTTQFADQILPATTNLPPKSPHHPQTQPNQPLFYTIQTQTQTPI 60

Query: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88
          FSLLHCGSSVVRYKREAKWEFLPCRSIA
Sbjct: 61 FSLLHCGSSVVRYKREAKWEFLPCRSIA 88

The following BLAST results are available for this feature:

BLAST of CsGy5G013405 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G013405 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50903.1	1.95e-59	100.00	hypothetical protein Csa_023100 [Cucumis sativus]	[more]

BLAST of CsGy5G013405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMT8	9.43e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G320420 PE=4 SV=1	[more]

BLAST of CsGy5G013405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G013405.1	CsGy5G013405.1	mRNA