CsGy5G012855 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G012855
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Gag-pol polyprotein
Location	Gy14Chr5: 15356131 .. 15356544 (+)
RNA-Seq Expression	CsGy5G012855
Synteny	CsGy5G012855

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTAATTAATCAGGCTGGACTTTCGCGCACGATTCTCAATGTTGGACCATTCTATCCCAAGCTCATCAGAGAGGTCATTGCTAATCTATCGTCTGATTTTGATGATCCAAGCAGTCCAGATTATCAAACAATTCATGTCAGAGGACGAACACTTGTCATCTCTCCCTATGTGATTAATACTTTCTTAGGGCTTACTCCGTCGGAGAATGCTGATTTACCAACCCACTCAACAGATACCCTGGCATCTGTGTTGACAGGAGGGTCTCTTATAGTTTGGCCACTCACTGGCATTCCTTCTGCTGCACTCAGTGTCAAGTATGCCATTTTGCACAAAATTGGCATCGTAAACTGGTTCCCATCATCACATGCCTCTAGTGTTTCTGTAGCTCTGGCTTCATTTCTCTTCTAA

mRNA sequence

ATGGAACTAATTAATCAGGCTGGACTTTCGCGCACGATTCTCAATGTTGGACCATTCTATCCCAAGCTCATCAGAGAGGTCATTGCTAATCTATCGTCTGATTTTGATGATCCAAGCAGTCCAGATTATCAAACAATTCATGTCAGAGGACGAACACTTGTCATCTCTCCCTATGTGATTAATACTTTCTTAGGGCTTACTCCGTCGGAGAATGCTGATTTACCAACCCACTCAACAGATACCCTGGCATCTGTGTTGACAGGAGGGTCTCTTATAGTTTGGCCACTCACTGGCATTCCTTCTGCTGCACTCAGTGTCAAGTATGCCATTTTGCACAAAATTGGCATCGTAAACTGGTTCCCATCATCACATGCCTCTAGTGTTTCTGTAGCTCTGGCTTCATTTCTCTTCTAA

Coding sequence (CDS)

ATGGAACTAATTAATCAGGCTGGACTTTCGCGCACGATTCTCAATGTTGGACCATTCTATCCCAAGCTCATCAGAGAGGTCATTGCTAATCTATCGTCTGATTTTGATGATCCAAGCAGTCCAGATTATCAAACAATTCATGTCAGAGGACGAACACTTGTCATCTCTCCCTATGTGATTAATACTTTCTTAGGGCTTACTCCGTCGGAGAATGCTGATTTACCAACCCACTCAACAGATACCCTGGCATCTGTGTTGACAGGAGGGTCTCTTATAGTTTGGCCACTCACTGGCATTCCTTCTGCTGCACTCAGTGTCAAGTATGCCATTTTGCACAAAATTGGCATCGTAAACTGGTTCCCATCATCACATGCCTCTAGTGTTTCTGTAGCTCTGGCTTCATTTCTCTTCTAA

Protein sequence

MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVINTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWFPSSHASSVSVALASFLF*

Homology

[Close]

BLAST of CsGy5G012855 vs. NCBI nr
Match: KAE8652915.1 (hypothetical protein Csa_004530 [Cucumis sativus])

HSP 1 Score: 272 bits (695), Expect = 6.90e-92
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI
Sbjct: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF
Sbjct: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASSVSVALASFLF
Sbjct: 121 PSSHASSVSVALASFLF 137

[Close]

BLAST of CsGy5G012855 vs. NCBI nr
Match: KAE8652900.1 (hypothetical protein Csa_022673, partial [Cucumis sativus])

HSP 1 Score: 211 bits (538), Expect = 8.38e-67
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI
Sbjct: 113 MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 172

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSV 106
           NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSV
Sbjct: 173 NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSV 218

[Close]

BLAST of CsGy5G012855 vs. NCBI nr
Match: XP_008466681.1 (PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo])

HSP 1 Score: 177 bits (448), Expect = 3.69e-52
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M+LI++AGL +TI NVGPFYP+LIRE I NL  +F++PSS DYQT+H+RG   VISP  I
Sbjct: 1   MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISPTAI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG T   +       T+ LA+VL+GG+L  WP+ GIP+AALSVKY ILHKIGI NWF
Sbjct: 61  NGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIANWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASS+SVAL +FL+
Sbjct: 121 PSSHASSISVALGAFLY 137

[Close]

BLAST of CsGy5G012855 vs. NCBI nr
Match: KAA0041594.1 (uncharacterized protein E6C27_scaffold93G00610 [Cucumis melo var. makuwa] >TYK19661.1 uncharacterized protein E5676_scaffold242G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (448), Expect = 4.00e-52
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M+LI++AGL +TI NVGPFYP+LIRE I NL  +F++PSS DYQT+H+RG   VISP  I
Sbjct: 4   MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISPTAI 63

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG T   +       T+ LA+VL+GG+L  WP+ GIP+AALSVKY ILHKIGI NWF
Sbjct: 64  NGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIANWF 123

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASS+SVAL +FL+
Sbjct: 124 PSSHASSISVALGAFLY 140

[Close]

BLAST of CsGy5G012855 vs. NCBI nr
Match: KAA0054586.1 (uncharacterized protein E6C27_scaffold24G003810 [Cucumis melo var. makuwa] >TYK27550.1 uncharacterized protein E5676_scaffold22G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (440), Expect = 7.53e-52
Identity = 87/137 (63.50%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M LI +AGL +TI +V PFYP+LIRE I NL +DF++PSSP+YQT+H+RG    ISP VI
Sbjct: 1   MNLIEKAGLLKTISDVCPFYPQLIREFIVNLPTDFNEPSSPNYQTVHIRGLKFTISPTVI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG   S N    + STD LASVL+GG+L  WP+ GIP+ ALSVKYAIL++IGI NWF
Sbjct: 61  NGFLGNAVSINFSSSSPSTDFLASVLSGGTLSSWPINGIPAVALSVKYAILYEIGIANWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASSVS AL +FL+
Sbjct: 121 PSSHASSVSAALGTFLY 137

[Close]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL
Match: A0A1S3CRT1 (uncharacterized protein LOC103504033 OS=Cucumis melo OX=3656 GN=LOC103504033 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.79e-52
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M+LI++AGL +TI NVGPFYP+LIRE I NL  +F++PSS DYQT+H+RG   VISP  I
Sbjct: 1   MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISPTAI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG T   +       T+ LA+VL+GG+L  WP+ GIP+AALSVKY ILHKIGI NWF
Sbjct: 61  NGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIANWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASS+SVAL +FL+
Sbjct: 121 PSSHASSISVALGAFLY 137

[Close]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL
Match: A0A5A7TDT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00530 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.94e-52
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M+LI++AGL +TI NVGPFYP+LIRE I NL  +F++PSS DYQT+H+RG   VISP  I
Sbjct: 4   MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISPTAI 63

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG T   +       T+ LA+VL+GG+L  WP+ GIP+AALSVKY ILHKIGI NWF
Sbjct: 64  NGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIANWF 123

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASS+SVAL +FL+
Sbjct: 124 PSSHASSISVALGAFLY 140

[Close]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL
Match: A0A5A7UK16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00170 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 3.65e-52
Identity = 87/137 (63.50%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M LI +AGL +TI +V PFYP+LIRE I NL +DF++PSSP+YQT+H+RG    ISP VI
Sbjct: 1   MNLIEKAGLLKTISDVCPFYPQLIREFIVNLPTDFNEPSSPNYQTVHIRGLKFTISPTVI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG   S N    + STD LASVL+GG+L  WP+ GIP+ ALSVKYAIL++IGI NWF
Sbjct: 61  NGFLGNAVSINFSSSSPSTDFLASVLSGGTLSSWPINGIPAVALSVKYAILYEIGIANWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASSVS AL +FL+
Sbjct: 121 PSSHASSVSAALGTFLY 137

[Close]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL
Match: A0A1S3CHW3 (uncharacterized protein LOC103501137 OS=Cucumis melo OX=3656 GN=LOC103501137 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 5.06e-52
Identity = 87/137 (63.50%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M L ++AGL +TI NVGPFYP+LIRE I NL  DF+DPSS +YQT+H+RG   VISP VI
Sbjct: 1   MNLTHKAGLEKTISNVGPFYPQLIREFIVNLPDDFNDPSSVNYQTVHIRGFKFVISPAVI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG T   +      +T+ LA+VL+GG+L  WP+ GIP AALSVKYAILHKIGI NWF
Sbjct: 61  NEFLGNTVDIDYSSSCPTTEVLANVLSGGTLSTWPVNGIPVAALSVKYAILHKIGIANWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSSHASS+S AL +FL+
Sbjct: 121 PSSHASSISAALDTFLY 137

[Close]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL
Match: A0A1S3C633 (uncharacterized protein LOC103496872 OS=Cucumis melo OX=3656 GN=LOC103496872 PE=4 SV=1)

HSP 1 Score: 175 bits (443), Expect = 6.88e-52
Identity = 86/137 (62.77%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 1   MELINQAGLSRTILNVGPFYPKLIREVIANLSSDFDDPSSPDYQTIHVRGRTLVISPYVI 60
           M+LI +AGL++TI NVGPFYP+LIRE I N  +DF+DPSSPDYQT+H+RG   VIS  VI
Sbjct: 1   MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKFVISSTVI 60

Query: 61  NTFLGLTPSENADLPTHSTDTLASVLTGGSLIVWPLTGIPSAALSVKYAILHKIGIVNWF 120
           N FLG          + ST+ LASVL+GG+L  WP+ GIP+ ALS+KYAI HKIGI NWF
Sbjct: 61  NGFLGNVIDVYCSPSSPSTNVLASVLSGGTLSTWPVNGIPAVALSIKYAIFHKIGIANWF 120

Query: 121 PSSHASSVSVALASFLF 137
           PSS ASSVS AL +FL+
Sbjct: 121 PSSRASSVSAALGTFLY 137

The following BLAST results are available for this feature:

BLAST of CsGy5G012855 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G012855 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652915.1	6.90e-92	100.00	hypothetical protein Csa_004530 [Cucumis sativus]	[more]
KAE8652900.1	8.38e-67	100.00	hypothetical protein Csa_022673, partial [Cucumis sativus]	[more]
XP_008466681.1	3.69e-52	62.77	PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo]	[more]
KAA0041594.1	4.00e-52	62.77	uncharacterized protein E6C27_scaffold93G00610 [Cucumis melo var. makuwa] >TYK19...	[more]
KAA0054586.1	7.53e-52	63.50	uncharacterized protein E6C27_scaffold24G003810 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRT1	1.79e-52	62.77	uncharacterized protein LOC103504033 OS=Cucumis melo OX=3656 GN=LOC103504033 PE=...	[more]
A0A5A7TDT9	1.94e-52	62.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UK16	3.65e-52	63.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CHW3	5.06e-52	63.50	uncharacterized protein LOC103501137 OS=Cucumis melo OX=3656 GN=LOC103501137 PE=...	[more]
A0A1S3C633	6.88e-52	62.77	uncharacterized protein LOC103496872 OS=Cucumis melo OX=3656 GN=LOC103496872 PE=...	[more]

BLAST of CsGy5G012855 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G012855.1	CsGy5G012855.1	mRNA