Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAACACCACCACATGAAATCTCCCTAGACATGAATAAACTCAATTCCTTGATCTTTGCAGTCACAAATAGAAATCCTGGAATAAGCAGTTGTACGTGGGGGGGAGCAGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCACCAGTCAACAGCCCTCAGTTTGGGAACACATTTCTAAGTTTAACTTTTCAGGCCATTTTAGGCTTGTTTCTCAGCTTAAACCCTTCATCTTCTTCACCTCTTCCTTCAAGGCTTTTTGCTGCTGTTATGTTGACTTCCTTCATATTTTCCTATGATGGAGTTATCCTTCAAAAGCCATTCCCAAAAACTGCACAGCTGTTGCAAACGTTCGGTGCTCTATTTGCTGCAATTGGTACCTGCATCATAGGAAGTCTTCTACTCTATCCAAACTTCACTTGGATCTGTTGGCTGGCGGCTGGCCTCATCTTGCCAGCCTTTATTATATCATTCAAGTGA
mRNA sequence
ATGGCAGAAACACCACCACATGAAATCTCCCTAGACATGAATAAACTCAATTCCTTGATCTTTGCAGTCACAAATAGAAATCCTGGAATAAGCAGTTGTACGTGGGGGGGAGCAGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCACCAGTCAACAGCCCTCAGTTTGGGAACACATTTCTAAGTTTAACTTTTCAGGCCATTTTAGGCTTGTTTCTCAGCTTAAACCCTTCATCTTCTTCACCTCTTCCTTCAAGGCTTTTTGCTGCTGTTATGTTGACTTCCTTCATATTTTCCTATGATGGAGTTATCCTTCAAAAGCCATTCCCAAAAACTGCACAGCTGTTGCAAACGTTCGGTGCTCTATTTGCTGCAATTGGTACCTGCATCATAGGAAGTCTTCTACTCTATCCAAACTTCACTTGGATCTGTTGGCTGGCGGCTGGCCTCATCTTGCCAGCCTTTATTATATCATTCAAGTGA
Coding sequence (CDS)
ATGGCAGAAACACCACCACATGAAATCTCCCTAGACATGAATAAACTCAATTCCTTGATCTTTGCAGTCACAAATAGAAATCCTGGAATAAGCAGTTGTACGTGGGGGGGAGCAGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCACCAGTCAACAGCCCTCAGTTTGGGAACACATTTCTAAGTTTAACTTTTCAGGCCATTTTAGGCTTGTTTCTCAGCTTAAACCCTTCATCTTCTTCACCTCTTCCTTCAAGGCTTTTTGCTGCTGTTATGTTGACTTCCTTCATATTTTCCTATGATGGAGTTATCCTTCAAAAGCCATTCCCAAAAACTGCACAGCTGTTGCAAACGTTCGGTGCTCTATTTGCTGCAATTGGTACCTGCATCATAGGAAGTCTTCTACTCTATCCAAACTTCACTTGGATCTGTTGGCTGGCGGCTGGCCTCATCTTGCCAGCCTTTATTATATCATTCAAGTGA
Protein sequence
MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQFGNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK*
Homology
BLAST of CsGy5G012670 vs. NCBI nr
Match:
KGN49806.1 (hypothetical protein Csa_004683 [Cucumis sativus])
HSP 1 Score: 330 bits (845), Expect = 6.99e-114
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
GNTFLSLTFQAI+GLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL
Sbjct: 61 GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
Query: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
BLAST of CsGy5G012670 vs. NCBI nr
Match:
KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 248 bits (632), Expect = 1.92e-81
Identity = 127/164 (77.44%), Postives = 136/164 (82.93%), Query Frame = 0
Query: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
MAET PHEISLDMN+L S I AVTNRNPGISSCTWG AASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
GNTF+S FQAILGLFL+L PS P S L VMLT+F+FS+ GV+LQKPFPK A LL
Sbjct: 61 GNTFVSSNFQAILGLFLNLPPSP--PPLSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLL 120
Query: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
Q FGAL AAIG CI+GS LL+PN TWI WLA GLILPAFI SFK
Sbjct: 121 QMFGALLAAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITSFK 162
BLAST of CsGy5G012670 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 142 bits (357), Expect = 7.47e-40
Identity = 79/156 (50.64%), Postives = 101/156 (64.74%), Query Frame = 0
Query: 13 MNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ----FGNTFLSLT 72
MN+L S I A+ RNP I+S LPI I MQRPSP NS + G T L LT
Sbjct: 1 MNELYSFITAINERNPEINS----------LPICITMQRPSPANSSKTENNVGKTILGLT 60
Query: 73 FQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFA 132
FQA+L LF++ +P+SS PL + LFAA +L SF S+ G+ LQ FP+ A L + GAL A
Sbjct: 61 FQAVLALFIT-SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120
Query: 133 AIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
AIG CI+ SLL++ NF WI WLA+G L AF++SF+
Sbjct: 121 AIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of CsGy5G012670 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 137 bits (344), Expect = 9.69e-38
Identity = 79/166 (47.59%), Postives = 102/166 (61.45%), Query Frame = 0
Query: 3 ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ--- 62
E+ +IS+DMN L SLI ++ RNP I+ LPI I MQ SP NS +
Sbjct: 2 ESSSQQISIDMNHLYSLITSINERNPEING----------LPICIIMQTASPANSSKTEN 61
Query: 63 -FGNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 122
G T L LTFQA+L LF++ + +SS PL + LF A +L SF S+ GV LQ FP+ A
Sbjct: 62 NVGTTILGLTFQAVLALFIT-SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIAL 121
Query: 123 LLQTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
L + GAL AAIG CI+ SLL++ NF WI WLA G L AF++SF+
Sbjct: 122 LFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of CsGy5G012670 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 128 bits (321), Expect = 3.58e-34
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0
Query: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV---NS 60
MA T H+ SLDM+ +S I ++ RN G+ C S+CLP++I+MQ+ +S
Sbjct: 1 MASTS-HQTSLDMSAFSSFIRTISQRNYGLGCCC---TPSNCLPVFIRMQQSPQATADSS 60
Query: 61 PQFGNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTA 120
+ G LSL+FQA+L LF+S P+S PL FAA + SF S+ + L FP+TA
Sbjct: 61 QKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTA 120
Query: 121 QLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164
L + GALF+A G C I S LL++ NF WICW+A + F +SFK
Sbjct: 121 HLFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of CsGy5G012670 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 330 bits (845), Expect = 3.39e-114
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
GNTFLSLTFQAI+GLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL
Sbjct: 61 GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
Query: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
BLAST of CsGy5G012670 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 248 bits (632), Expect = 9.31e-82
Identity = 127/164 (77.44%), Postives = 136/164 (82.93%), Query Frame = 0
Query: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
MAET PHEISLDMN+L S I AVTNRNPGISSCTWG AASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
GNTF+S FQAILGLFL+L PS P S L VMLT+F+FS+ GV+LQKPFPK A LL
Sbjct: 61 GNTFVSSNFQAILGLFLNLPPSP--PPLSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLL 120
Query: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
Q FGAL AAIG CI+GS LL+PN TWI WLA GLILPAFI SFK
Sbjct: 121 QMFGALLAAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITSFK 162
BLAST of CsGy5G012670 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 142 bits (357), Expect = 3.62e-40
Identity = 79/156 (50.64%), Postives = 101/156 (64.74%), Query Frame = 0
Query: 13 MNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ----FGNTFLSLT 72
MN+L S I A+ RNP I+S LPI I MQRPSP NS + G T L LT
Sbjct: 1 MNELYSFITAINERNPEINS----------LPICITMQRPSPANSSKTENNVGKTILGLT 60
Query: 73 FQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFA 132
FQA+L LF++ +P+SS PL + LFAA +L SF S+ G+ LQ FP+ A L + GAL A
Sbjct: 61 FQAVLALFIT-SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120
Query: 133 AIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
AIG CI+ SLL++ NF WI WLA+G L AF++SF+
Sbjct: 121 AIGVCIVASLLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of CsGy5G012670 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 137 bits (344), Expect = 4.69e-38
Identity = 79/166 (47.59%), Postives = 102/166 (61.45%), Query Frame = 0
Query: 3 ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ--- 62
E+ +IS+DMN L SLI ++ RNP I+ LPI I MQ SP NS +
Sbjct: 2 ESSSQQISIDMNHLYSLITSINERNPEING----------LPICIIMQTASPANSSKTEN 61
Query: 63 -FGNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQ 122
G T L LTFQA+L LF++ + +SS PL + LF A +L SF S+ GV LQ FP+ A
Sbjct: 62 NVGTTILGLTFQAVLALFIT-SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIAL 121
Query: 123 LLQTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIISFK 164
L + GAL AAIG CI+ SLL++ NF WI WLA G L AF++SF+
Sbjct: 122 LFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of CsGy5G012670 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 128 bits (321), Expect = 1.73e-34
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0
Query: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPV---NS 60
MA T H+ SLDM+ +S I ++ RN G+ C S+CLP++I+MQ+ +S
Sbjct: 1 MASTS-HQTSLDMSAFSSFIRTISQRNYGLGCCC---TPSNCLPVFIRMQQSPQATADSS 60
Query: 61 PQFGNTFLSLTFQAILGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTA 120
+ G LSL+FQA+L LF+S P+S PL FAA + SF S+ + L FP+TA
Sbjct: 61 QKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTA 120
Query: 121 QLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164
L + GALF+A G C I S LL++ NF WICW+A + F +SFK
Sbjct: 121 HLFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN49806.1 | 6.99e-114 | 99.39 | hypothetical protein Csa_004683 [Cucumis sativus] | [more] |
| KAA0050244.1 | 1.92e-81 | 77.44 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KAA0050246.1 | 7.47e-40 | 50.64 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KGN49803.1 | 9.69e-38 | 47.59 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
| KGN49808.1 | 3.58e-34 | 42.26 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KQ03 | 3.39e-114 | 99.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
| A0A5D3BEH8 | 9.31e-82 | 77.44 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7U7U1 | 3.62e-40 | 50.64 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJN8 | 4.69e-38 | 47.59 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
| A0A0A0KJP2 | 1.73e-34 | 42.26 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
