CsGy5G012610 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G012610
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 14853882 .. 14855051 (+)
RNA-Seq Expression	CsGy5G012610
Synteny	CsGy5G012610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGGATGCAGCGAGAGTGAAAGTGCCCGAGGAACGAGAGGATCTTCAAAAGGGTCCCAGCGGCGCTATTCACCACGTACCCACAATTTATTTTGGATACACCCACCAGTGGCGGCGGCGGTGAGGCTTCTCTTTCTCACTTCTTCCAGTTCCCCATCTAAGTTTCAGTTGATTTTTAACCTTATTTGCTTTTAGTTTTGCAATTTCTGCTGTTTCACTGAGACTTCTTTTCTCATTTCTGGTCACTCCTCATTGTCTTTTTCATCTCTTCTATGTTCTTATTTCATTAAGTGATGCTGATTTGATTTTTCTCCTTTTTCTTTCTGAAGTTCAGAAGAGGCAAGTATAACTGAGTTTTCCTGTTGGTTTTTGCTCATGATTCGTATTTAATTGTTTTGGTTTCACTGGAAATGGAACACACACACAAAAACACCCTTGTTTCATTCGGCATCCATTTGTAGAACCCAAATAAAACTTTGGTTTTCGTTTTGCTTTGGACTTAGGATTGGTGGAGTTCCCTGTTATTTTTATTTCTCTGTGAACAGAAATGGAAAGAAAAAATGTTTGTATCTCACTGGCATGCATGTGGTGTGTGTTACCCATCAAGGGTTCAAGGGTTCAAGGGTAAATTGAAACTAACCATACATTAGAGCCATTTTTGTGTATTTTCCTTTTAATTTGTACCGCTTGGAAACTTACCCATCACTAATGTCTTGTCACCCCTCTTGTGCAAGCTTTCTTTACCATTATTAAAGGCTACTCTTACTACAAGAGAAGAGGAGAAAACAAAAAGATGGCTTGCTGCCTGCTGGTTTTTCCCAGCATTTTTCTGACTTGATTTGATCTATCTTTCTCGTTTATTTGAATGTTTCCCCTGTTATTCATATTTGAATTTGGTGAGCTGTGTATTTCCAGTGCTTTCAAATTTCAAATAATAAAGGTTTATCTACAGTGAAAAGTGTTCTCAGTTTTTAAAAAATTTTGGTCTCCAGTTATTCTTGTTTGATGCCGTTGCAGTTTTTTTTTTTTTTAACATGTATTCACATGTGTATATCTCTGTGTGCATGCTCATGTCTAAATATTTCTGGTATGTTGTGATTGTAGGTTATAATGCCCAACTTAAGAATTGCATGGTGGATTTTTCATGAGATCGTTGATGGATGA

mRNA sequence

ATGGATGATGGATGCAGCGAGAGTGAAAGTGCCCGAGGAACGAGAGGATCTTCAAAAGGGTCCCAGCGGCGCTATTCACCACGTACCCACAATTTATTTTGGATACACCCACCAGTGGCGGCGGCGGTTATAATGCCCAACTTAAGAATTGCATGGTGGATTTTTCATGAGATCGTTGATGGATGA

Coding sequence (CDS)

ATGGATGATGGATGCAGCGAGAGTGAAAGTGCCCGAGGAACGAGAGGATCTTCAAAAGGGTCCCAGCGGCGCTATTCACCACGTACCCACAATTTATTTTGGATACACCCACCAGTGGCGGCGGCGGTTATAATGCCCAACTTAAGAATTGCATGGTGGATTTTTCATGAGATCGTTGATGGATGA

Protein sequence

MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVDG*

Homology

[Close]

BLAST of CsGy5G012610 vs. NCBI nr
Match: KAE8648312.1 (hypothetical protein Csa_004668 [Cucumis sativus])

HSP 1 Score: 131 bits (329), Expect = 1.94e-38
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVD 60
          MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVD
Sbjct: 1  MDDGCSESESARGTRGSSKGSQRRYSPRTHNLFWIHPPVAAAVIMPNLRIAWWIFHEIVD 60

The following BLAST results are available for this feature:

BLAST of CsGy5G012610 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G012610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648312.1	1.94e-38	100.00	hypothetical protein Csa_004668 [Cucumis sativus]	[more]

BLAST of CsGy5G012610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy5G012610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G012610.2	CsGy5G012610.2	mRNA