CsGy5G012175 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G012175
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionGlutamate decarboxylase
LocationGy14Chr5: 14472182 .. 14472550 (+)
RNA-Seq ExpressionCsGy5G012175
SyntenyCsGy5G012175
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGGTGTGGGAGATATGTTGCAGTGATTGAGGTGAACATTGTTGATGTGTCGGATGGCAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

mRNA sequence

ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

Coding sequence (CDS)

ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

Protein sequence

MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNVATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC*
Homology
BLAST of CsGy5G012175 vs. NCBI nr
Match: KGN49750.1 (hypothetical protein Csa_017826 [Cucumis sativus])

HSP 1 Score: 205 bits (521), Expect = 1.94e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60
           MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV
Sbjct: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60

Query: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103
           ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
Sbjct: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103

BLAST of CsGy5G012175 vs. NCBI nr
Match: XP_022992583.1 (glutamate decarboxylase 4-like [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 3.12e-11
Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERE-------------------RSTCGFFVVVREN----L 60
           +GVP+V    KDRS  H+EFE                     +      VVVRE+    L
Sbjct: 372 IGVPVVAFCLKDRST-HDEFEVSVMLRRFGWIVPAYRMPKDAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 103
              L++DI++VL E++++PSKN A  T L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPSKNAAKATALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsGy5G012175 vs. NCBI nr
Match: KAG6579167.1 (Glutamate decarboxylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 7.94e-11
Identity = 51/129 (39.53%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFF-------------------VVVREN----L 60
           +GVP+V    KDRS  H+EFE       F                    VVVRE+    L
Sbjct: 368 IGVPVVAFCLKDRST-HDEFEVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRAL 427

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 103
              L++DI++VL E++++P KN A  T L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 428 AERLLVDIIKVLAELDTLPPKNAAKATALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 487

BLAST of CsGy5G012175 vs. NCBI nr
Match: KAG7016684.1 (Glutamate decarboxylase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.6 bits (166), Expect = 7.95e-11
Identity = 51/129 (39.53%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFF-------------------VVVREN----L 60
           +GVP+V    KDRS  H+EFE       F                    VVVRE+    L
Sbjct: 372 IGVPVVAFCLKDRST-HDEFEVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 103
              L++DI++VL E++++P KN A  T L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPPKNAAKATALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsGy5G012175 vs. NCBI nr
Match: XP_023551690.1 (glutamate decarboxylase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 1.79e-09
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFF-------------------VVVREN----L 60
           +GVP+V  S KDRS  H+EF+       F                    VVVRE+    L
Sbjct: 372 IGVPVVAFSLKDRST-HDEFKVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 103
              L++DI++VL E++++P K+ A    L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPPKSAAKAIALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsGy5G012175 vs. ExPASy TrEMBL
Match: A0A0A0KJ37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G106000 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 9.38e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60
           MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV
Sbjct: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60

Query: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103
           ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
Sbjct: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103

BLAST of CsGy5G012175 vs. ExPASy TrEMBL
Match: A0A6J1JZN1 (Glutamate decarboxylase OS=Cucurbita maxima OX=3661 GN=LOC111488884 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.51e-11
Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERE-------------------RSTCGFFVVVREN----L 60
           +GVP+V    KDRS  H+EFE                     +      VVVRE+    L
Sbjct: 372 IGVPVVAFCLKDRST-HDEFEVSVMLRRFGWIVPAYRMPKDAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 103
              L++DI++VL E++++PSKN A  T L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPSKNAAKATALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsGy5G012175 vs. ExPASy TrEMBL
Match: A0A6J1FII5 (Glutamate decarboxylase OS=Cucurbita moschata OX=3662 GN=LOC111445635 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.18e-09
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFF-------------------VVVREN----L 60
           +GVP+V    KDRS  H+EFE       F                    VVVRE+    L
Sbjct: 372 IGVPVVAFCLKDRST-HDEFEVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 103
              L++DI++VL E++++P K+ A    L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPPKSAAKAIALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsGy5G012175 vs. ExPASy TrEMBL
Match: A0A3G9D4C2 (Glutamate decarboxylase OS=Gentiana triflora OX=55190 GN=GtGAD PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.22e-04
Identity = 42/124 (33.87%), Postives = 59/124 (47.58%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFF-------------------VVVRENLCCTL 60
           +GVP+V  S KD SH HNEFE       F                    VVVRE+   TL
Sbjct: 371 IGVPLVAFSLKDTSH-HNEFEVADLLRRFGWIVPAYTMPADAQHITVLRVVVREDFSRTL 430

Query: 61  ----VIDIVEVLGEVNSVPSKNVATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNA 101
               V DI +VL E++++PS+  A  T   +GE+ I+VKK  +E  ++I     + + N 
Sbjct: 431 AERLVSDITKVLHELDTLPSRVAAKSTGGAEGEDAIVVKKTAREIQLEITTAWKNFVANK 490

BLAST of CsGy5G012175 vs. ExPASy TrEMBL
Match: A0A0A0KLK1 (Glutamate decarboxylase OS=Cucumis sativus OX=3659 GN=Csa_5G100000 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.99e-04
Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFF-------------------VVVRENLCCTL 60
           MGVP+V  S KDRS  H+EFE       F                    VV+RE+   TL
Sbjct: 298 MGVPVVAFSLKDRSR-HDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTL 357

Query: 61  ----VIDIVEVLGEVNSVPSKNVATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNA 100
               V+DIV+VL E++++P K    +  LE G+ E   KK  +ET  +I     + ITNA
Sbjct: 358 AERLVLDIVKVLAELDTLPPKKGEKMESLENGKKETSGKKSAEETEREIATYWRN-ITNA 417

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN49750.11.94e-66100.00hypothetical protein Csa_017826 [Cucumis sativus][more]
XP_022992583.13.12e-1139.53glutamate decarboxylase 4-like [Cucurbita maxima][more]
KAG6579167.17.94e-1139.53Glutamate decarboxylase, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7016684.17.95e-1139.53Glutamate decarboxylase, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023551690.11.79e-0937.98glutamate decarboxylase-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A0A0KJ379.38e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G106000 PE=4 SV=1[more]
A0A6J1JZN11.51e-1139.53Glutamate decarboxylase OS=Cucurbita maxima OX=3661 GN=LOC111488884 PE=3 SV=1[more]
A0A6J1FII51.18e-0937.98Glutamate decarboxylase OS=Cucurbita moschata OX=3662 GN=LOC111445635 PE=3 SV=1[more]
A0A3G9D4C22.22e-0433.87Glutamate decarboxylase OS=Gentiana triflora OX=55190 GN=GtGAD PE=2 SV=1[more]
A0A0A0KLK12.99e-0435.77Glutamate decarboxylase OS=Cucumis sativus OX=3659 GN=Csa_5G100000 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G012175.1CsGy5G012175.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity