CsGy5G012125 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G012125
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 14420221 .. 14420433 (+)
RNA-Seq ExpressionCsGy5G012125
SyntenyCsGy5G012125
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCGCCGAAGCTCCTCGCTGGATTCCCAAGCGTGGGGAAGTTCTCCGTCGTGTTCTTAAAAACCTCTTTTTCTTCTGCCTCTGCTCTCCTCCTGCTCTCCCGCCGCCCACCCCATCCTCCTCTCGCGTTTTTCCTTCCTAATAATCCAATTCAAATCAGGGTTTCACCCGAATTTATGCGCAGTTGTGGGACTCAGGAATTAGATGA

mRNA sequence

ATGCCCACCGCCGAAGCTCCTCGCTGGATTCCCAAGCGTGGGGAAGTTCTCCGTCGTGTTCTTAAAAACCTCTTTTTCTTCTGCCTCTGCTCTCCTCCTGCTCTCCCGCCGCCCACCCCATCCTCCTCTCGCGGTTTCACCCGAATTTATGCGCAGTTGTGGGACTCAGGAATTAGATGA

Coding sequence (CDS)

ATGCCCACCGCCGAAGCTCCTCGCTGGATTCCCAAGCGTGGGGAAGTTCTCCGTCGTGTTCTTAAAAACCTCTTTTTCTTCTGCCTCTGCTCTCCTCCTGCTCTCCCGCCGCCCACCCCATCCTCCTCTCGCGGTTTCACCCGAATTTATGCGCAGTTGTGGGACTCAGGAATTAGATGA

Protein sequence

MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRGFTRIYAQLWDSGIR*
Homology
BLAST of CsGy5G012125 vs. NCBI nr
Match: KGN49746.1 (hypothetical protein Csa_017810 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 6.88e-38
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1  MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRGFTRIYAQLWDSGIR 59
          MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSR FTRIYAQLWDSGIR
Sbjct: 1  MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRVFTRIYAQLWDSGIR 59

BLAST of CsGy5G012125 vs. NCBI nr
Match: KAG6594821.1 (hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 4.69e-10
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 3  TAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPT 39
          T  APRWIPKRG+VLRR+LK LFF C CS P  PPP+
Sbjct: 53 TGAAPRWIPKRGQVLRRILKKLFFLCFCSSP--PPPS 87

BLAST of CsGy5G012125 vs. NCBI nr
Match: KAG6579170.1 (hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 7.24e-10
Identity = 32/52 (61.54%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 7  PRWIPKRGEVLRRVLKNLFFFCLCS-------PPALPPPTP---SSSRGFTR 48
          PR IPKRG VLRRVL+ LFFFC+CS       PP  PPP P   SSSR F R
Sbjct: 16 PRLIPKRGAVLRRVLEKLFFFCICSAANPKAPPPPPPPPPPQFFSSSRVFPR 67

BLAST of CsGy5G012125 vs. NCBI nr
Match: OMO60782.1 (hypothetical protein CCACVL1_23881, partial [Corchorus capsularis])

HSP 1 Score: 46.6 bits (109), Expect = 6.77e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 3  TAEAPRWIPKRGEVLRRVLKNLFFF-CLC 30
          +AEAPRWIPKRG+VL+R+LK +F   CLC
Sbjct: 22 SAEAPRWIPKRGKVLKRILKLVFLLSCLC 50

BLAST of CsGy5G012125 vs. ExPASy TrEMBL
Match: A0A0A0KPU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 3.33e-38
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1  MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRGFTRIYAQLWDSGIR 59
          MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSR FTRIYAQLWDSGIR
Sbjct: 1  MPTAEAPRWIPKRGEVLRRVLKNLFFFCLCSPPALPPPTPSSSRVFTRIYAQLWDSGIR 59

BLAST of CsGy5G012125 vs. ExPASy TrEMBL
Match: A0A1R3GRT3 (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_23881 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.28e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 3  TAEAPRWIPKRGEVLRRVLKNLFFF-CLC 30
          +AEAPRWIPKRG+VL+R+LK +F   CLC
Sbjct: 22 SAEAPRWIPKRGKVLKRILKLVFLLSCLC 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN49746.16.88e-3898.31hypothetical protein Csa_017810 [Cucumis sativus][more]
KAG6594821.14.69e-1070.27hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579170.17.24e-1061.54hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sorori... [more]
OMO60782.16.77e-0568.97hypothetical protein CCACVL1_23881, partial [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
A0A0A0KPU03.33e-3898.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1[more]
A0A1R3GRT33.28e-0568.97Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G012125.1CsGy5G012125.1mRNA