CsGy5G008505 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G008505
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 6482280 .. 6482471 (+)
RNA-Seq Expression	CsGy5G008505
Synteny	CsGy5G008505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGACGACAAACAAAAACCACAGTCATTCCTACAAGGCACCATGACGAACAACGAAGGTAAGGGATGTCCGACAAATACAAATGACGACATGATGGAGGATGTCGAAAGGAGGACATGGCGAAGGAATGAGCACGACAATTTTCATGTGGACAGTTTTGGGTGTCGAGGGTTTATGTCGAAGGGATGA

mRNA sequence

ATGACGGACGACAAACAAAAACCACAGTCATTCCTACAAGGCACCATGACGAACAACGAAGGTAAGGGATGTCCGACAAATACAAATGACGACATGATGGAGGATGTCGAAAGGAGGACATGGCGAAGGAATGAGCACGACAATTTTCATGTGGACAGTTTTGGGTGTCGAGGGTTTATGTCGAAGGGATGA

Coding sequence (CDS)

ATGACGGACGACAAACAAAAACCACAGTCATTCCTACAAGGCACCATGACGAACAACGAAGGTAAGGGATGTCCGACAAATACAAATGACGACATGATGGAGGATGTCGAAAGGAGGACATGGCGAAGGAATGAGCACGACAATTTTCATGTGGACAGTTTTGGGTGTCGAGGGTTTATGTCGAAGGGATGA

Protein sequence

MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFHVDSFGCRGFMSKG*

Homology

[Close]

BLAST of CsGy5G008505 vs. NCBI nr
Match: KAE8648041.1 (hypothetical protein Csa_005892, partial [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 1.26e-30
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFH 50
          MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFH
Sbjct: 11 MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFH 60

[Close]

BLAST of CsGy5G008505 vs. ExPASy TrEMBL
Match: A0A0A0KM20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218220 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 2.33e-42
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFHVDSFGCRGFM 60
          MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFHVDSFGCRGFM
Sbjct: 1  MTDDKQKPQSFLQGTMTNNEGKGCPTNTNDDMMEDVERRTWRRNEHDNFHVDSFGCRGFM 60

Query: 61 SKG 63
          SKG
Sbjct: 61 SKG 63

The following BLAST results are available for this feature:

BLAST of CsGy5G008505 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G008505 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648041.1	1.26e-30	100.00	hypothetical protein Csa_005892, partial [Cucumis sativus]	[more]

BLAST of CsGy5G008505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM20	2.33e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218220 PE=4 SV=1	[more]

BLAST of CsGy5G008505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008505.1	CsGy5G008505.1	mRNA