CsGy5G008060 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G008060
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	TMV resistance protein N-like
Location	Gy14Chr5: 5900058 .. 5900424 (-)
RNA-Seq Expression	CsGy5G008060
Synteny	CsGy5G008060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGACTTAATACAACAAATGGATATGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGTAACAACTATCTGCACACAAACTTTGAATATGTATATTAATTATAAGAACAACTTTATTATTTTTGAATGACTTGAAATGTTTGTCTGTTTTTTTTTTTTATATATATAATTTGTAGGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCTATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

mRNA sequence

ATGCATGACTTAATACAACAAATGGATATGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCTATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

Coding sequence (CDS)

ATGCATGACTTAATACAACAAATGGATATGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCTATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

Protein sequence

MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRNGHFF*

Homology

[Close]

BLAST of CsGy5G008060 vs. NCBI nr
Match: KGN50664.1 (hypothetical protein Csa_005801 [Cucumis sativus])

HSP 1 Score: 148 bits (373), Expect = 1.33e-44
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 8  MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 67
          MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER
Sbjct: 1  MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 60

Query: 68 VKNLVVLKVRNGHFF 82
          VKNLVVLKVRNGHFF
Sbjct: 61 VKNLVVLKVRNGHFF 75

[Close]

BLAST of CsGy5G008060 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 106 bits (265), Expect = 1.52e-24
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  K++FPQP EL+I
Sbjct: 411 MHDLIQQMGRTIHLSKTSKSHKRKRLLIKDDAMDVLNGNKEARAVKVIKIDFPQPTELDI 470

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VKNLVVL+V N 
Sbjct: 471 DSRAFEKVKNLVVLEVENA 489

[Close]

BLAST of CsGy5G008060 vs. NCBI nr
Match: KAA0063673.1 (TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 2.08e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  KLNFP+P ELEI
Sbjct: 460 MHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNKEARAVKVIKLNFPKPTELEI 519

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VK LVVL +RN 
Sbjct: 520 DSRAFEKVKKLVVLDIRNA 538

[Close]

BLAST of CsGy5G008060 vs. NCBI nr
Match: XP_008455236.2 (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 106 bits (264), Expect = 2.08e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  KLNFP+P ELEI
Sbjct: 496 MHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNKEARAVKVIKLNFPKPTELEI 555

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VK LVVL +RN 
Sbjct: 556 DSRAFEKVKKLVVLDIRNA 574

[Close]

BLAST of CsGy5G008060 vs. NCBI nr
Match: XP_008455228.2 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 106 bits (264), Expect = 2.08e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  KLNFP+P ELEI
Sbjct: 506 MHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNKEARAVKVIKLNFPKPTELEI 565

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VK LVVL +RN 
Sbjct: 566 DSRAFEKVKKLVVLDIRNA 584

[Close]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL
Match: A0A0A0KP48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G207930 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 6.42e-45
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 8  MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 67
          MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER
Sbjct: 1  MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 60

Query: 68 VKNLVVLKVRNGHFF 82
          VKNLVVLKVRNGHFF
Sbjct: 61 VKNLVVLKVRNGHFF 75

[Close]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL
Match: A0A1S4DZR7 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 7.36e-25
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  K++FPQP EL+I
Sbjct: 411 MHDLIQQMGRTIHLSKTSKSHKRKRLLIKDDAMDVLNGNKEARAVKVIKIDFPQPTELDI 470

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VKNLVVL+V N 
Sbjct: 471 DSRAFEKVKNLVVLEVENA 489

[Close]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL
Match: A0A5A7V6E5 (TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001900 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.01e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  KLNFP+P ELEI
Sbjct: 460 MHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNKEARAVKVIKLNFPKPTELEI 519

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VK LVVL +RN 
Sbjct: 520 DSRAFEKVKKLVVLDIRNA 538

[Close]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL
Match: A0A1S3C0G1 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495440 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.01e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  KLNFP+P ELEI
Sbjct: 496 MHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNKEARAVKVIKLNFPKPTELEI 555

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VK LVVL +RN 
Sbjct: 556 DSRAFEKVKKLVVLDIRNA 574

[Close]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL
Match: A0A1S3C005 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495440 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.01e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1   MHDLIQQMDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEI 60
           MHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN EAR VK  KLNFP+P ELEI
Sbjct: 506 MHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNKEARAVKVIKLNFPKPTELEI 565

Query: 61  DSKAIERVKNLVVLKVRNG 79
           DS+A E+VK LVVL +RN 
Sbjct: 566 DSRAFEKVKKLVVLDIRNA 584

The following BLAST results are available for this feature:

BLAST of CsGy5G008060 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G008060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50664.1	1.33e-44	100.00	hypothetical protein Csa_005801 [Cucumis sativus]	[more]
XP_016901487.1	1.52e-24	67.09	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
KAA0063673.1	2.08e-24	68.35	TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008455236.2	2.08e-24	68.35	PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo]	[more]
XP_008455228.2	2.08e-24	68.35	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo]	[more]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP48	6.42e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G207930 PE=4 SV=1	[more]
A0A1S4DZR7	7.36e-25	67.09	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1	[more]
A0A5A7V6E5	1.01e-24	68.35	TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C0G1	1.01e-24	68.35	TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495440...	[more]
A0A1S3C005	1.01e-24	68.35	TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495440...	[more]

BLAST of CsGy5G008060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008060.2	CsGy5G008060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity