CsGy5G007120 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G007120
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	ROTUNDIFOLIA like 8
Location	Gy14Chr5: 4904629 .. 4905135 (+)
RNA-Seq Expression	CsGy5G007120
Synteny	CsGy5G007120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCTATTTCTTCTTCTGCCGCCGCCGCCGCAGCAGCAGCCGTTCCGTCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCAAAGAAAGGAGCTCCGGCTAGAACCCGATCATCTTCTTCCTCATGTCCTCTGATGAGAAATTCTTCAGACAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGGTGAAGGAACAAAGGGCACGATTTTACATCATGAGGCGATGTGTTACCATGCTCATTTGTTGGCATAACTACAACGATTCCTAGAATCTCACTCCTTTTTGTTCTTCCCTTTTAAGAGAAAGATCAGAATCAGAATCAGAATCAAAACCAGAATCAGATCAAATCATTTGGGTTTTCTTTTTCTCTTTCTTTTCCTTTTTGGAGAAACGTGCAATGTTCTATCTCCTCTGGTCCTCAAAATGGGAGCTATTGTGGCCAAAGCCCAGATGGGATTTTCCAGAAACATTGCAAAGCCGGATCTTTGAGCAAGCTTAG

mRNA sequence

ATGACTTCTATTTCTTCTTCTGCCGCCGCCGCCGCAGCAGCAGCCGTTCCGTCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCAAAGAAAGGAGCTCCGGCTAGAACCCGATCATCTTCTTCCTCATGTCCTCTGATGAGAAATTCTTCAGACAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGAATCTCACTCCTTTTTGTTCTTCCCTTTTAAGAGAAAGATCAGAATCAGAATCAGAATCAAAACCAGAATCAGATCAAATCATTTGGGTTTTCTTTTTCTCTTTCTTTTCCTTTTTGGAGAAACGTGCAATGTTCTATCTCCTCTGGTCCTCAAAATGGGAGCTATTGTGGCCAAAGCCCAGATGGGATTTTCCAGAAACATTGCAAAGCCGGATCTTTGAGCAAGCTTAG

Coding sequence (CDS)

ATGACTTCTATTTCTTCTTCTGCCGCCGCCGCCGCAGCAGCAGCCGTTCCGTCGCCGTTTTACATGGAGGAGAAATGGAAGCTGCCAAAGAAAGGAGCTCCGGCTAGAACCCGATCATCTTCTTCCTCATGTCCTCTGATGAGAAATTCTTCAGACAGGAGATGTTCTTTTACAAGAAAATGTGCAAAATTGAATCTCACTCCTTTTTGTTCTTCCCTTTTAAGAGAAAGATCAGAATCAGAATCAGAATCAAAACCAGAATCAGATCAAATCATTTGGGTTTTCTTTTTCTCTTTCTTTTCCTTTTTGGAGAAACGTGCAATGTTCTATCTCCTCTGGTCCTCAAAATGGGAGCTATTGTGGCCAAAGCCCAGATGGGATTTTCCAGAAACATTGCAAAGCCGGATCTTTGAGCAAGCTTAG

Protein sequence

MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKLNLTPFCSSLLRERSESESESKPESDQIIWVFFFSFFSFLEKRAMFYLLWSSKWELLWPKPRWDFPETLQSRIFEQA*

Homology

[Close]

BLAST of CsGy5G007120 vs. NCBI nr
Match: XP_008461687.1 (PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo] >KAA0050338.1 uncharacterized protein E6C27_scaffold88G00650 [Cucumis melo var. makuwa] >TYK03552.1 uncharacterized protein E5676_scaffold293G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 5.56e-29
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60
          MTSISS  AAAAAAAVP PFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK
Sbjct: 1  MTSISS--AAAAAAAVPPPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60

Query: 61 CAKL 64
          CAKL
Sbjct: 61 CAKL 62

[Close]

BLAST of CsGy5G007120 vs. NCBI nr
Match: XP_038889639.1 (uncharacterized protein LOC120079504 [Benincasa hispida] >XP_038889640.1 uncharacterized protein LOC120079504 [Benincasa hispida] >XP_038889641.1 uncharacterized protein LOC120079504 [Benincasa hispida] >XP_038889642.1 uncharacterized protein LOC120079504 [Benincasa hispida])

HSP 1 Score: 111 bits (277), Expect = 8.36e-29
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60
          M+S SSSAAA AAAAVP PFYMEEKWKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRK
Sbjct: 1  MSSFSSSAAATAAAAVPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRK 60

Query: 61 CAKL 64
          CAKL
Sbjct: 61 CAKL 64

[Close]

BLAST of CsGy5G007120 vs. NCBI nr
Match: KAG6600989.1 (hypothetical protein SDJN03_06222, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031601.1 hypothetical protein SDJN02_05642, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (257), Expect = 8.07e-26
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60
          M SISSSAAAA    VP PFYMEEKWKLPKKGAPAR+RSSSSSCPLMRNSS+RRCSFTRK
Sbjct: 1  MASISSSAAAA----VPPPFYMEEKWKLPKKGAPARSRSSSSSCPLMRNSSERRCSFTRK 60

Query: 61 CAKL 64
          CAKL
Sbjct: 61 CAKL 60

[Close]

BLAST of CsGy5G007120 vs. NCBI nr
Match: KAE8647994.1 (hypothetical protein Csa_021478 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.59e-20
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 22 MEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 64
          MEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL
Sbjct: 1  MEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 43

[Close]

BLAST of CsGy5G007120 vs. NCBI nr
Match: XP_022139156.1 (uncharacterized protein LOC111010130 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.92e-15
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 10 AAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 64
          A+ ++AV  PFY+EEKWKL KK APAR+RSS+S  PLMRNSS+RRCSFTRKCAKL
Sbjct: 2  ASVSSAVAPPFYLEEKWKLSKKEAPARSRSSAS-YPLMRNSSERRCSFTRKCAKL 55

[Close]

BLAST of CsGy5G007120 vs. ExPASy TrEMBL
Match: A0A0A0KQA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182670 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 6.47e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60
          MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK
Sbjct: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60

Query: 61 CAKL 64
          CAKL
Sbjct: 61 CAKL 64

[Close]

BLAST of CsGy5G007120 vs. ExPASy TrEMBL
Match: A0A5A7U4Z4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00470 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 2.69e-29
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60
          MTSISS  AAAAAAAVP PFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK
Sbjct: 1  MTSISS--AAAAAAAVPPPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60

Query: 61 CAKL 64
          CAKL
Sbjct: 61 CAKL 62

[Close]

BLAST of CsGy5G007120 vs. ExPASy TrEMBL
Match: A0A1S3CF72 (uncharacterized protein LOC103500229 OS=Cucumis melo OX=3656 GN=LOC103500229 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 2.69e-29
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MTSISSSAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60
          MTSISS  AAAAAAAVP PFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK
Sbjct: 1  MTSISS--AAAAAAAVPPPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRK 60

Query: 61 CAKL 64
          CAKL
Sbjct: 61 CAKL 62

[Close]

BLAST of CsGy5G007120 vs. ExPASy TrEMBL
Match: A0A6J1CBU5 (uncharacterized protein LOC111010130 OS=Momordica charantia OX=3673 GN=LOC111010130 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.30e-16
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 10 AAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 64
          A+ ++AV  PFY+EEKWKL KK APAR+RSS+S  PLMRNSS+RRCSFTRKCAKL
Sbjct: 2  ASVSSAVAPPFYLEEKWKLSKKEAPARSRSSAS-YPLMRNSSERRCSFTRKCAKL 55

[Close]

BLAST of CsGy5G007120 vs. ExPASy TrEMBL
Match: F6HNW1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g01890 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.36e-11
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 7  SAAAAAAAAVPSPFYMEEKWKLPKKGAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 64
          S A AAAAA P  FY++EKWKL KK     +RS SS+ PLMRNSS RRCSFTRKCA L
Sbjct: 3  STATAAAAAAPQ-FYLDEKWKLSKKEG---SRSRSSTSPLMRNSSQRRCSFTRKCASL 56

[Close]

BLAST of CsGy5G007120 vs. TAIR 10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8 )

HSP 1 Score: 42.0 bits (97), Expect = 4.7e-04
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 9  AAAAAAAVPSPFYMEEKWKLPKK--GAPARTRSSSSSCPLMRNSSDRRCSFTRKCAKL 65
          A++++       +++EKWKL KK  GA   TRSSS+S          RC+FTRKCA+L
Sbjct: 2  ASSSSLTRSGSVHLDEKWKLSKKDGGASRITRSSSTSSSSFNGKKQGRCAFTRKCARL 59

The following BLAST results are available for this feature:

BLAST of CsGy5G007120 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G007120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461687.1	5.56e-29	95.31	PREDICTED: uncharacterized protein LOC103500229 [Cucumis melo] >KAA0050338.1 unc...	[more]
XP_038889639.1	8.36e-29	90.63	uncharacterized protein LOC120079504 [Benincasa hispida] >XP_038889640.1 unchara...	[more]
KAG6600989.1	8.07e-26	87.50	hypothetical protein SDJN03_06222, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647994.1	3.59e-20	100.00	hypothetical protein Csa_021478 [Cucumis sativus]	[more]
XP_022139156.1	1.92e-15	74.55	uncharacterized protein LOC111010130 [Momordica charantia]	[more]

BLAST of CsGy5G007120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA4	6.47e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182670 PE=4 SV=1	[more]
A0A5A7U4Z4	2.69e-29	95.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CF72	2.69e-29	95.31	uncharacterized protein LOC103500229 OS=Cucumis melo OX=3656 GN=LOC103500229 PE=...	[more]
A0A6J1CBU5	9.30e-16	74.55	uncharacterized protein LOC111010130 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
F6HNW1	4.36e-11	67.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0019g01890 PE=4 SV=...	[more]

BLAST of CsGy5G007120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39705.1	4.7e-04	43.10	ROTUNDIFOLIA like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G007120.1	CsGy5G007120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane