CsGy5G006685 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G006685
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DUF674 domain-containing protein
Location	Gy14Chr5: 4558524 .. 4559814 (-)
RNA-Seq Expression	CsGy5G006685
Synteny	CsGy5G006685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCATTTCAAGCATTACTCTCTTGAAGGAGTTTAATATCGGAGATGTGGGTGTTTTGGAGGAGAAGCTCATCACTTTGGATGTCAATGAGGTAAAATGTATATATTATTTATTACCTTTTTTTATTTGATGAGACGTTGGATTGGGAAATCATAATACACATTTCTTAATTGACATAAAAGTTGTATTTGAAGTTTTTACTCCTTTGATAAGTATTTGGTATAGATTTTTATTTTTAAAAACTTAAATTTGGTAAACACTACTGGCATAAACATGAAATTTATCTTTCTTTTTAGAAAAGAATATATACGAACGGTCAGGAGTATACTTAAACATCTTCATTAGAAGGTATTCATTAAACACATAGAAATACAAAAAAAGTTCAGGACTAGGGATAAGCTCATTACAAATGTCCTATAGATTGCAGAAAGCATGAGTTTTGATAGTTATGTGAGCAGCATTGTAATCTTGAAAGAGTTTGTTTTTGTGAGACCAAACCTCCAACCAACAGATTTCCTCCAATGTGTTTAGAAGGCTATTTTCGGTGTCCTTGAAATTACATTTGTTATGTTCATTATATATGGGTCCATTAGGCAGCAGTGACCAATTAATTCGAATTGGATGATATCGTTGGTGTTGGAATAGCGGTTGTGACAAATGCTGGAGCAGAGATCAAAGAATGTTGTGATCACTGTCGTTTTTCCACTCTGTTGTGCTTGTTGTCTTTTTCCAAAATAACCTTGTCAAAATCACACTGGATGAACAAAATGATCAATGGTTTAATTCGCTTTTGCATTTGCATAACCGACACCAATTCGGATTAAGAATGGTGTTGTCGAAGCTTCCTTTGAAGGATCTTCATGGTGTTCATAGAGACCACATGAAGAATTTAATCTTTTTAGAAATGTTGGATTTCCAGAGATTAGAGTAACAGTATACTTTGTTGAGATGTCTTGATGTATCTATGTATATCTATGTCTCTCAGCCTCGTGTATCTGGTTCAAATTTATACATATAAGTTATCTTAATTGACGTTGTATATCTAGTAATTAACCTTTCTGTATGAATTATTTTTAGAATCAGTGGCTCATGTTTTAATATAATTGCATCTCGAATATCTTTTTGATATTAGGAAGTGATGAAGGTGGTAGAGAGGTGTCAACCTTTTGATCCCTCATGTCTTTTCTCTCTATTGATTTTCGCAGGGAGTGAGGCTGTTGGGGGCATCGCTGCAATCCAAGACTATTCTCACAGATGTCTTCCTTGTAGAGACGAATCTCTCATAA

mRNA sequence

ATGTCCTCCATTTCAAGCATTACTCTCTTGAAGGAGTTTAATATCGGAGATGTGGGTGTTTTGGAGGAGAAGCTCATCACTTTGGATGTCAATGAGGGAGTGAGGCTGTTGGGGGCATCGCTGCAATCCAAGACTATTCTCACAGATGTCTTCCTTGTAGAGACGAATCTCTCATAA

Coding sequence (CDS)

ATGTCCTCCATTTCAAGCATTACTCTCTTGAAGGAGTTTAATATCGGAGATGTGGGTGTTTTGGAGGAGAAGCTCATCACTTTGGATGTCAATGAGGGAGTGAGGCTGTTGGGGGCATCGCTGCAATCCAAGACTATTCTCACAGATGTCTTCCTTGTAGAGACGAATCTCTCATAA

Protein sequence

MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFLVETNLS*

Homology

[Close]

BLAST of CsGy5G006685 vs. NCBI nr
Match: KAE8647972.1 (hypothetical protein Csa_000561 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 1.32e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFLVETNLS 58
          MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFLVETNLS
Sbjct: 1  MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFLVETNLS 58

[Close]

BLAST of CsGy5G006685 vs. NCBI nr
Match: XP_008461735.1 (PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF674 domain-containing protein [Cucumis melo var. makuwa] >TYJ97778.1 DUF674 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 2.00e-15
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSITLL +FNI +VG LEEK+ITLDVN+GV+LL ASLQSKT+LTDVFL
Sbjct: 178 MSTISSITLLNKFNIKEVGALEEKVITLDVNQGVKLLRASLQSKTVLTDVFL 229

[Close]

BLAST of CsGy5G006685 vs. NCBI nr
Match: XP_022139199.1 (uncharacterized protein LOC111010168 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 6.31e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSITLL +FNI +VG LEEK+IT+D N+GV+LL ASLQSKT+LTDVFL
Sbjct: 126 MSTISSITLLNKFNIKEVGALEEKIITMDFNQGVKLLKASLQSKTVLTDVFL 177

[Close]

BLAST of CsGy5G006685 vs. NCBI nr
Match: KAA0052180.1 (DUF674 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.14e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFLVE 54
          MS+I + TLLK+FNI D+G LEEKLIT +V+EGV+LL ASLQSKT+LTDVFL E
Sbjct: 38 MSNIPTTTLLKKFNIKDMGTLEEKLITFNVSEGVKLLEASLQSKTVLTDVFLGE 91

[Close]

BLAST of CsGy5G006685 vs. NCBI nr
Match: XP_004147723.1 (uncharacterized protein LOC101207526 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.11e-14
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSITLL +FNI +VG LEEK++TLDV++G++LL ASLQSKT+LTDVFL
Sbjct: 177 MSTISSITLLNKFNIKEVGALEEKVVTLDVSQGLKLLKASLQSKTVLTDVFL 228

[Close]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL
Match: A0A5A7U8V2 (DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3341G00030 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.67e-16
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSITLL +FNI +VG LEEK+ITLDVN+GV+LL ASLQSKT+LTDVFL
Sbjct: 178 MSTISSITLLNKFNIKEVGALEEKVITLDVNQGVKLLRASLQSKTVLTDVFL 229

[Close]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL
Match: A0A1S3CGQ2 (uncharacterized protein LOC103500268 OS=Cucumis melo OX=3656 GN=LOC103500268 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.67e-16
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSITLL +FNI +VG LEEK+ITLDVN+GV+LL ASLQSKT+LTDVFL
Sbjct: 178 MSTISSITLLNKFNIKEVGALEEKVITLDVNQGVKLLRASLQSKTVLTDVFL 229

[Close]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL
Match: A0A6J1CC90 (uncharacterized protein LOC111010168 OS=Momordica charantia OX=3673 GN=LOC111010168 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.05e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSITLL +FNI +VG LEEK+IT+D N+GV+LL ASLQSKT+LTDVFL
Sbjct: 126 MSTISSITLLNKFNIKEVGALEEKIITMDFNQGVKLLKASLQSKTVLTDVFL 177

[Close]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL
Match: A0A5A7UAG2 (DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1855G00020 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.50e-15
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFLVE 54
          MS+I + TLLK+FNI D+G LEEKLIT +V+EGV+LL ASLQSKT+LTDVFL E
Sbjct: 38 MSNIPTTTLLKKFNIKDMGTLEEKLITFNVSEGVKLLEASLQSKTVLTDVFLGE 91

[Close]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL
Match: A0A6J1CBJ8 (uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010013 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.28e-14
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1   MSSISSITLLKEFNIGDVGVLEEKLITLDVNEGVRLLGASLQSKTILTDVFL 52
           MS+ISSI LL +FN+ +VG LEEK++TLDVNEGV+LL ASL SKT+LTDVF+
Sbjct: 183 MSTISSIALLNKFNVKEVGALEEKVVTLDVNEGVKLLKASLHSKTVLTDVFI 234

The following BLAST results are available for this feature:

BLAST of CsGy5G006685 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G006685 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647972.1	1.32e-28	100.00	hypothetical protein Csa_000561 [Cucumis sativus]	[more]
XP_008461735.1	2.00e-15	78.85	PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF...	[more]
XP_022139199.1	6.31e-15	75.00	uncharacterized protein LOC111010168 [Momordica charantia]	[more]
KAA0052180.1	1.14e-14	72.22	DUF674 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_004147723.1	5.11e-14	73.08	uncharacterized protein LOC101207526 [Cucumis sativus]	[more]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8V2	9.67e-16	78.85	DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CGQ2	9.67e-16	78.85	uncharacterized protein LOC103500268 OS=Cucumis melo OX=3656 GN=LOC103500268 PE=...	[more]
A0A6J1CC90	3.05e-15	75.00	uncharacterized protein LOC111010168 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7UAG2	5.50e-15	72.22	DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1CBJ8	4.28e-14	71.15	uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of CsGy5G006685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007750	Protein of unknown function DUF674	PFAM	PF05056	DUF674	coord: 4..55 e-value: 4.3E-7 score: 29.1
IPR007750	Protein of unknown function DUF674	PANTHER	PTHR33103	OS01G0153900 PROTEIN	coord: 1..55
None	No IPR available	PANTHER	PTHR33103:SF54	SUBFAMILY NOT NAMED	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G006685.1	CsGy5G006685.1	mRNA