CsGy5G006387 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G006387
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 4322066 .. 4323375 (-)
RNA-Seq ExpressionCsGy5G006387
SyntenyCsGy5G006387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATACGAAAGTGGAGTATCACTGTCGAATAGGTGGATTTCACAGACACGTCGTTCATGTGGAAACGAACGCCCGTTGGAGAAGTGCACCAAAAAGTAAGCAGTTGAAAATGGAAGACAATATGCGAAATGGAATTTCTGAATATTCGAATGCCAAATGTTGGTGTCAGATCAATGGCTTTCCGAATGAATCAAGGGTTCAATTCACTACCACCAAAGAGAACACAAACGATTCAGCTTTCTTGATTCTTCTACGTTTGAATTCGAAGGGTTGATCTTTTGCATTTCAATCTCTCTCTCTCTTTCACTTTCCCGGAAAATTCACCCTCTCAGTTTCTCGAGAAAGTGATCTGGAAGAATTTTTCCTTTTTCCTTTTGGTAATTTCTTCAATTCATATATAATTTTTAGGGTTTTTGATGCTACCCCTTTTTTGCCAATTAGGAAAGAAGATGAGCAGAAGTAGCCTACAATGGCGGGTTCGTTAAAGGTCAAAGTCAATGAGTCCGAGCAATAAATTAGAAAACCATAACTGAAGAATGCCAAATTTAGTAAGCCAGGAAGAGCCTTTCGAAAGCGTGGGCTTTATTTTTTTTTCTTCGTTTCTTAAATTGTTCCCAATCCGAGGGATTCTGGTGTTGGAGAGTGATCCATCTGTTTCTTTGGCTCAAAGAAACAGAAAAATAAAATAAAAAAATTTAAAAAAAAATAGAAAAGAAAAGGAAGGAACCTTGAGGAGGAGGAGGGCCAATTAAACTTGCAGGAATTCTCTCTTTCCAGATCTACTCGTTTCAACGTTCTGACAGTTTTTTTTCTTCTGTCAGAACACCCGAAATTCTTTTTACTCGATTCCCTTTTTTTGTTTTTGTTTTTCTAATTTCATCATATAATGCGTTTCTCAATCTATAATTGAGCATTTTTGCAGAAAAGGGTCCTGCAAGATCTCTCGGCAATCTGTGCTCAAGGTTCATAATATCAACTTGTTTTACTTGTTGTTGGTATCATCATATTCTTTGTTCTTTCTAGGTTCAATTTTGTAAAGATGGCGATAACATTTTGATTATTGATGCGATTTATTGTATATATGTTTGTATGTATCGATTTTGAACTTATTGTTGCTGTTGTGTTTGCAGTTCTACGTATAGCCATCAAGAAACTCAATGTCTTTTCGTTGAAACATTAATGGTGCCTGCTTTGATCAATGGTTTTCTGACATCTGAAACTTGTTATTTCGATTCCTATATTTGTGAACGAAATCAAGCAAAGTTTTAATACTATCCTTCTTGTCCGATTGAAGAATGGTTTTAG

mRNA sequence

ATGACTTATACGAAAGTGGAGTATCACTGTCGAATAGGTGGATTTCACAGACACGTCGTTCATGTGGAAACGAACGCCCGTTGGAGAAGTGCACCAAAAAGTAAGCAGTTGAAAATGGAAGACAATATGCGAAATGGAATTTCTGAATATTCGAATGCCAAATGTTGGTGTCAGATCAATGGCTTTCCGAATGAATCAAGGGTTCAATTCACTACCACCAAAGAGAACACAAACGATTCAGCTTTCTTGATTCTTCTACGTTTGAATTCGAAGGAAAAGGGTCCTGCAAGATCTCTCGGCAATCTGTGCTCAAGTTCTACGTATAGCCATCAAGAAACTCAATGTCTTTTCGTTGAAACATTAATGGTGCCTGCTTTGATCAATGAATGGTTTTAG

Coding sequence (CDS)

ATGACTTATACGAAAGTGGAGTATCACTGTCGAATAGGTGGATTTCACAGACACGTCGTTCATGTGGAAACGAACGCCCGTTGGAGAAGTGCACCAAAAAGTAAGCAGTTGAAAATGGAAGACAATATGCGAAATGGAATTTCTGAATATTCGAATGCCAAATGTTGGTGTCAGATCAATGGCTTTCCGAATGAATCAAGGGTTCAATTCACTACCACCAAAGAGAACACAAACGATTCAGCTTTCTTGATTCTTCTACGTTTGAATTCGAAGGAAAAGGGTCCTGCAAGATCTCTCGGCAATCTGTGCTCAAGTTCTACGTATAGCCATCAAGAAACTCAATGTCTTTTCGTTGAAACATTAATGGTGCCTGCTTTGATCAATGAATGGTTTTAG

Protein sequence

MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQINGFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVETLMVPALINEWF*
Homology
[Close]
BLAST of CsGy5G006387 vs. NCBI nr
Match: KGN50487.1 (hypothetical protein Csa_000684 [Cucumis sativus])

HSP 1 Score: 274 bits (700), Expect = 7.59e-93
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQIN 60
           MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQIN
Sbjct: 1   MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQIN 60

Query: 61  GFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVET 120
           GFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVET
Sbjct: 61  GFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVET 120

Query: 121 LMVPALINEWF 131
           LMVPALINEWF
Sbjct: 121 LMVPALINEWF 131

[Close]
BLAST of CsGy5G006387 vs. NCBI nr
Match: KAG6601034.1 (hypothetical protein SDJN03_06267, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031841.1 hypothetical protein SDJN02_05882, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.3 bits (129), Expect = 9.29e-07
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 39 MEDNMRNGISEYSNAKCWCQINGFPNESRVQFTTTKENTNDSAF 82
          ME+ MRNGISEYSNA+C CQI+ F NES   FT+ +E  +DS+F
Sbjct: 1  MEECMRNGISEYSNARCLCQISTFLNESTADFTS-EEKASDSSF 43

[Close]
BLAST of CsGy5G006387 vs. ExPASy TrEMBL
Match: A0A0A0KQ36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177070 PE=4 SV=1)

HSP 1 Score: 274 bits (700), Expect = 3.68e-93
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQIN 60
           MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQIN
Sbjct: 1   MTYTKVEYHCRIGGFHRHVVHVETNARWRSAPKSKQLKMEDNMRNGISEYSNAKCWCQIN 60

Query: 61  GFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVET 120
           GFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVET
Sbjct: 61  GFPNESRVQFTTTKENTNDSAFLILLRLNSKEKGPARSLGNLCSSSTYSHQETQCLFVET 120

Query: 121 LMVPALINEWF 131
           LMVPALINEWF
Sbjct: 121 LMVPALINEWF 131

The following BLAST results are available for this feature:
BLAST of CsGy5G006387 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G006387 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50487.17.59e-93100.00hypothetical protein Csa_000684 [Cucumis sativus][more]
KAG6601034.19.29e-0761.36hypothetical protein SDJN03_06267, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsGy5G006387 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ363.68e-93100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177070 PE=4 SV=1[more]
BLAST of CsGy5G006387 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G006387.1CsGy5G006387.1mRNA