CsGy5G002970 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G002970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 1932445 .. 1932693 (+)
RNA-Seq Expression	CsGy5G002970
Synteny	CsGy5G002970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

mRNA sequence

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

Coding sequence (CDS)

ATGGAAGAAAAGGTTTTGGAGAGAGAAAGGGAACAACCCACCCCATCTTCTTCTCATATTTTTATTTCATTCGTCTTTTTTTCTTTGGGTGTTGTTGAAAACTTCAATGCCGACTGGATTTACACGAGTGGCAGCGGAATGAACTTGGGTTTAAGCGGTGGTGCGATGCTGAGGGGAAAACGAAAGAAGATCAGATCTGAAACCTATAAAGAGGCAGATGAAATTGCGCTACAACGACATGAGGCTTGA

Protein sequence

MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGKRKKIRSETYKEADEIALQRHEA*

Homology

[Close]

BLAST of CsGy5G002970 vs. NCBI nr
Match: KGN50126.1 (hypothetical protein Csa_000208 [Cucumis sativus])

HSP 1 Score: 161 bits (407), Expect = 1.05e-49
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60
          MEEKVLEREREQPTPSSSHI ISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK
Sbjct: 1  MEEKVLEREREQPTPSSSHILISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60

Query: 61 RKKIRSETYKEADEIALQRHEA 82
          RKKIRSETYKEADEIALQRHEA
Sbjct: 61 RKKIRSETYKEADEIALQRHEA 82

[Close]

BLAST of CsGy5G002970 vs. ExPASy TrEMBL
Match: A0A0A0KQX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154880 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 5.10e-50
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEEKVLEREREQPTPSSSHIFISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60
          MEEKVLEREREQPTPSSSHI ISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK
Sbjct: 1  MEEKVLEREREQPTPSSSHILISFVFFSLGVVENFNADWIYTSGSGMNLGLSGGAMLRGK 60

Query: 61 RKKIRSETYKEADEIALQRHEA 82
          RKKIRSETYKEADEIALQRHEA
Sbjct: 61 RKKIRSETYKEADEIALQRHEA 82

The following BLAST results are available for this feature:

BLAST of CsGy5G002970 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G002970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50126.1	1.05e-49	98.78	hypothetical protein Csa_000208 [Cucumis sativus]	[more]

BLAST of CsGy5G002970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQX8	5.10e-50	98.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154880 PE=4 SV=1	[more]

BLAST of CsGy5G002970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G002970.1	CsGy5G002970.1	mRNA