CsGy5G002900 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G002900
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 1899482 .. 1900127 (-)
RNA-Seq ExpressionCsGy5G002900
SyntenyCsGy5G002900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTTCACTACCCTTTGCTTGTTTTTAATCCAAAACATGGGATCATTGGCCCACGGTATCATATCCCTCTTTTTCTTTCTTTTCCTAATTTTAATCACTCTATAAATACTCTCTTAATCACACTTTTCACCCCCCACCACCCCTCTAATCTCTTCCTCCTCTCCTCCCCCGGAATTTTCATTTCTTCATTTCATTCCTTTCTAATTATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGAGAGTTTTTATAGGGTAATTAATTTTTGTTAGTTACTATTAATACTAACAAAAGTGGACTTAGAAAGGGTTAATATATATTGTTATACAAATGTACTAATTAATTTGTTGAGTTTCCAATTTTTTGAAAGTCCATATTTGAATTTTTGTTTTTTTAATTTTAGTTAAAATGTTCCGTTTGATATCTATAGATTTGATCAATTTTGAATTTCATAATGAAAATAG

mRNA sequence

ATGAATCTTCACTACCCTTTGCTTGTTTTTAATCCAAAACATGGGATCATTGGCCCACGGTATCATATCCCTCTTTTTCTTTCTTTTCCTAATTTTAATCACTCTATAAATACTCTCTTAATCACACTTTTCACCCCCCACCACCCCTCTAATCTCTTCCTCCTCTCCTCCCCCGGAATTTTCATTTCTTCATTTCATTCCTTTCTAATTATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGAGAGTTTTTATAGGGTAATTAATTTTTGTTAGTTACTATTAATACTAACAAAAGTGGACTTAGAAAGGGTTAATATATATTGTTATACAAATGTACTAATTAATTTGTTGAGTTTCCAATTTTTTGAAAGTCCATATTTGAATTTTTGTTTTTTTAATTTTAGTTAAAATGTTCCGTTTGATATCTATAGATTTGATCAATTTTGAATTTCATAATGAAAATAG

Coding sequence (CDS)

ATGAATCTTCACTACCCTTTGCTTGTTTTTAATCCAAAACATGGGATCATTGGCCCACGGTATCATATCCCTCTTTTTCTTTCTTTTCCTAATTTTAATCACTCTATAAATACTCTCTTAATCACACTTTTCACCCCCCACCACCCCTCTAATCTCTTCCTCCTCTCCTCCCCCGGAATTTTCATTTCTTCATTTCATTCCTTTCTAATTATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Protein sequence

MNLHYPLLVFNPKHGIIGPRYHIPLFLSFPNFNHSINTLLITLFTPHHPSNLFLLSSPGIFISSFHSFLIMDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGADNVVFNCFSA*
Homology
BLAST of CsGy5G002900 vs. NCBI nr
Match: KAE8647863.1 (hypothetical protein Csa_000530 [Cucumis sativus])

HSP 1 Score: 283 bits (725), Expect = 2.29e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query: 1   MNLHYPLLVFNPKHGIIGPRYHIPLFLSFPNFNHSINTLLITLFTPHHPSNLFLLSSPGI 60
           MNLHYPLLVFNPKHGIIGPRYHIPLFLSFPNFNHSINTLLITLFTPHHPSNLFLLSSPGI
Sbjct: 1   MNLHYPLLVFNPKHGIIGPRYHIPLFLSFPNFNHSINTLLITLFTPHHPSNLFLLSSPGI 60

Query: 61  FISSFHSFLIMDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKT 120
           FISSFHSFLIMDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKT
Sbjct: 61  FISSFHSFLIMDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKT 120

Query: 121 GLFRFTATGADNVVFNCFSA 140
           GLFRFTATGADNVVFNCFSA
Sbjct: 121 GLFRFTATGADNVVFNCFSA 140

BLAST of CsGy5G002900 vs. NCBI nr
Match: OMO79504.1 (hypothetical protein CCACVL1_13647 [Corchorus capsularis])

HSP 1 Score: 52.0 bits (123), Expect = 8.68e-06
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGL---FRFTA 130
           MDVFIP++YVIRRRIEKK AA A + T       +R   + K+ E   KT L   FRF +
Sbjct: 1   MDVFIPEEYVIRRRIEKKAAA-AIINT------GKRLPEAGKKVEKEKKTVLPSPFRFDS 60

Query: 131 TG---------ADNVVFNCFSA 140
           T          A+NVVF+CFSA
Sbjct: 61  TNEFLVPAGGIAENVVFSCFSA 75

BLAST of CsGy5G002900 vs. NCBI nr
Match: XP_007040180.1 (PREDICTED: uncharacterized protein LOC18606492 [Theobroma cacao] >EOY24681.1 Nucleotide binding, putative [Theobroma cacao])

HSP 1 Score: 51.2 bits (121), Expect = 2.32e-05
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEA---PAKTGLFRFTA 130
           MDVFIP++YVIRRRIEK+ AA   +  + P+   +  + +DKEK++   P +     F  
Sbjct: 17  MDVFIPEEYVIRRRIEKRAAA---IAGKRPNKVPEATKRTDKEKKSLPPPFRLDSNDFLV 76

Query: 131 TGA--DNVVFNCFSA 140
           +G   +N+ F CFSA
Sbjct: 77  SGGIGENLDFGCFSA 88

BLAST of CsGy5G002900 vs. NCBI nr
Match: MBA0552860.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 49.3 bits (116), Expect = 9.21e-05
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAP----AKTGLFRFT 130
           MDVFIP++YVIRRR EKK A+ A  ++     A QR  N  + K  P     + G   F 
Sbjct: 1   MDVFIPEEYVIRRRFEKKEASIAEERSNMVVKASQR--NEVETKSLPLLLYGRAGTNGFV 60

Query: 131 ATGA--DNVVFNCFSA 140
           A+G   +N+VF+C SA
Sbjct: 61  ASGGINENIVFSCLSA 74

BLAST of CsGy5G002900 vs. NCBI nr
Match: KJB20707.1 (hypothetical protein B456_003G160100 [Gossypium raimondii])

HSP 1 Score: 48.9 bits (115), Expect = 1.29e-04
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAP----AKTGLFRFT 130
           MDVFIP++YVIRRR EKK A  A  ++     A QR  N  + K  P     + G   F 
Sbjct: 1   MDVFIPEEYVIRRRFEKKEATIAEERSNMVVKASQR--NEVETKSLPLLLYGRAGTNGFV 60

Query: 131 ATGA--DNVVFNCFSA 140
           A+G   +N+VF+C SA
Sbjct: 61  ASGGINENIVFSCLSA 74

BLAST of CsGy5G002900 vs. ExPASy TrEMBL
Match: A0A0A0KKA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 2.64e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 130
           MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA
Sbjct: 1   MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 131 DNVVFNCFSA 140
           DNVVFNCFSA
Sbjct: 61  DNVVFNCFSA 70

BLAST of CsGy5G002900 vs. ExPASy TrEMBL
Match: A0A1R3IAB5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13647 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.20e-06
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGL---FRFTA 130
           MDVFIP++YVIRRRIEKK AA A + T       +R   + K+ E   KT L   FRF +
Sbjct: 1   MDVFIPEEYVIRRRIEKKAAA-AIINT------GKRLPEAGKKVEKEKKTVLPSPFRFDS 60

Query: 131 TG---------ADNVVFNCFSA 140
           T          A+NVVF+CFSA
Sbjct: 61  TNEFLVPAGGIAENVVFSCFSA 75

BLAST of CsGy5G002900 vs. ExPASy TrEMBL
Match: A0A061G559 (Nucleotide binding, putative OS=Theobroma cacao OX=3641 GN=TCM_016220 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.12e-05
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEA---PAKTGLFRFTA 130
           MDVFIP++YVIRRRIEK+ AA   +  + P+   +  + +DKEK++   P +     F  
Sbjct: 17  MDVFIPEEYVIRRRIEKRAAA---IAGKRPNKVPEATKRTDKEKKSLPPPFRLDSNDFLV 76

Query: 131 TGA--DNVVFNCFSA 140
           +G   +N+ F CFSA
Sbjct: 77  SGGIGENLDFGCFSA 88

BLAST of CsGy5G002900 vs. ExPASy TrEMBL
Match: A0A7J8LKC3 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_023636 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.46e-05
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAP----AKTGLFRFT 130
           MDVFIP++YVIRRR EKK A+ A  ++     A QR  N  + K  P     + G   F 
Sbjct: 1   MDVFIPEEYVIRRRFEKKEASIAEERSNMVVKASQR--NEVETKSLPLLLYGRAGTNGFV 60

Query: 131 ATGA--DNVVFNCFSA 140
           A+G   +N+VF+C SA
Sbjct: 61  ASGGINENIVFSCLSA 74

BLAST of CsGy5G002900 vs. ExPASy TrEMBL
Match: A0A0D2MPN2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G160100 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.27e-05
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAP----AKTGLFRFT 130
           MDVFIP++YVIRRR EKK A  A  ++     A QR  N  + K  P     + G   F 
Sbjct: 1   MDVFIPEEYVIRRRFEKKEATIAEERSNMVVKASQR--NEVETKSLPLLLYGRAGTNGFV 60

Query: 131 ATGA--DNVVFNCFSA 140
           A+G   +N+VF+C SA
Sbjct: 61  ASGGINENIVFSCLSA 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8647863.12.29e-96100.00hypothetical protein Csa_000530 [Cucumis sativus][more]
OMO79504.18.68e-0647.56hypothetical protein CCACVL1_13647 [Corchorus capsularis][more]
XP_007040180.12.32e-0541.33PREDICTED: uncharacterized protein LOC18606492 [Theobroma cacao] >EOY24681.1 Nuc... [more]
MBA0552860.19.21e-0543.42hypothetical protein [Gossypium lobatum][more]
KJB20707.11.29e-0443.42hypothetical protein B456_003G160100 [Gossypium raimondii][more]
Match NameE-valueIdentityDescription
A0A0A0KKA72.64e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1[more]
A0A1R3IAB54.20e-0647.56Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13647 PE=4 ... [more]
A0A061G5591.12e-0541.33Nucleotide binding, putative OS=Theobroma cacao OX=3641 GN=TCM_016220 PE=4 SV=1[more]
A0A7J8LKC34.46e-0543.42Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_023636 PE=4 SV=1[more]
A0A0D2MPN26.27e-0543.42Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G160100 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G002900.2CsGy5G002900.2mRNA