CsGy5G002720 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G002720
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionYqgFc domain-containing protein
LocationGy14Chr5: 1797668 .. 1800907 (+)
RNA-Seq ExpressionCsGy5G002720
SyntenyCsGy5G002720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACATTTGGGGTTGATTATGGGCCTAATGAGTTCAGCGGTTTTGTAAGGGACCTATCATTGCCAAACTCAAATAAAAAATTGATTTATTCGAGCAATTAATCGCATCGAGGGCTCGGAAGGATTCGGGCTTGATGGAGTCTTGACTCACATTCGATTGCGAATGAGTCTGAATGTGCATAACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGCAATACGAGATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGGTATTTTGTTCATGATGGGATTTTGTGTGAGGGATTGGGAGTAATGGGGCTGAAGCTGAAGTTAACCAAACTTGACCAGTGTTAGTTGTTGTCGATTGTTGCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGGTGAGGCCTTTTACTTTGGTTCTTTTTACTTTGTCGTTCCTATTAAGATTTGTGGAATGTAATTTGATGCAATGCTGAGTGATAACAATGATTGAAGGTTGGTGCCACAAAATCTTGTCGGGAGAACTTTAATTTACTTGAGATATTATTTTCTCTTTCTTTTATCTTTTTCCGTCGTGTGAAGATTTGTTCAAGGTTATTTGATGCTATGCTGAATGATAAACGATGACTGGTTGTGCCACAAAAATCTATAGGGAGTATTTTTTTTAAAAAATCTATTTCCTAGGAAGATTTGTAGAACGATATTTGATGAAATGCTGAATGATAGACAATGATTGAAGGTTGAACAAAATTTTGCAGGGAGAACTTTAATTTTCTTGAGATTTTCTTCTCTCTTTATATCTATCTATCTATCTCTACACACACGCAATCTTTTTCCTTCCTATGAAGATTGGTAGAATGTTGTTTTATGCAATCCTAAATGATAAACAATGATTGAAGGGTGGTGCACACAAATTTTCAGGGAGAATTTTTTCGGTGAGTACCACTTTAGGTGTTGAAATGGGATTTATTAATGATGACACCAGGATTACTTTGTAGTTGCATAGCTTTAACTTTACCTTTTTCCTTACCTCATTTCCTGAGATGTGTTGTTGCGCAACGTATTTGCCTTTAAACTTCAATATATGATAGTGAATTGTTAATGTTGTTCTTTCTTGCAACATTCAGTCATCTCCATCCTGTTTGTATTTACAGTTGTTTCTGATTTGTGTATTCAGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGTGCGTTCTTTATCTCTTCAGAGACATCATTATTGACTCTTATCTGTACTTGACCTTATATTGTTCTGAGTACAGGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGGTTATTGCATCTAGTTTAGCAAGCCCTTCCGGTTCGTCTTGTGACATGTGGCATGCCTTTCAATGTCTCGGTCCATGTCTCCGTTGAATTCACAAACTTGGTCAAATGAGTGTGATTATGTTTTGAATTGTCTTTCACCTGATAAAATTTTCTTTTACGTGGTGCTGACTTATGCATAGGCTACTGCTACATTGAATTTCATCAACAATGAATTTTATATTTGTGATTTACTGATTTCTTTTATCTATACACAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGTAATTTAGAATTCTCTCTCTCTTTTGCTTAAACTTTCATCTTGATAAGGTTGGCAGCTGAAATGATTATCCAATTTTCTCAATGTAAGAATAATATCTTAAAATATCAATAGAAGCTTCAGTGTATTAACAATAAGGTGTGTATGTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAGAGTAAGGTGGACTATATGGGATCAGGTACTTGTTTGTCAACGGAGTTGCTTTCTTTGCAAATTGAAATTTCAAAATTTTGAATTAAAAAATGTCCTTTTGTTCATAAATGTTTACCGTGACTAGAAAATTGGGTTTTCAAATTTAGTTTCTAATGTAAATTTTAGACCATTTAGAAACTAATTTCATATTTCATGGACTAGTCAGAAACTGCATTTGTACTGGATCCAACATGTCATTTTTGGATTTCTAAGGACTAAATAGAACTAAAAGTATTAGTTTTGAAATTCATATACCAAATAAAAATTAAGGGGTTGTTTGGACCCTCAACTTTGAGTGGGTGGAGTGGTGTATTATAATACACTCCATGTTTGGGTCTCGAATAACAATAGAGTGGTTCTTTTTAACTAACCTTAAAATAATTTACACTCTAAATATAAAGTATTATAAAGTATCGACTAATAACTAACTCAACGTTTCAAATGTTTTAAGTTTAAGTATCACCCATGAAGGTTTTATTTTATTACCTAGGTCGGTGATATTTGTGATTTCTAAAGGACAGTTTGTGTTAAACTTTGCCTTCAAATTTTAGGCTTCCTTGTATTGTTCCCACCCTTTGATAATAATTTGATACATTATACATTGATCATTATATGCAGACATTTGATTCTCCCTTCTTAGTAGGGGATGGAACAATTTATTTGAAGCTCTCAGTTCTTAAGTGGCGATGAATATGCATTGACAAATGACATCTTAAAAGGGTGAATCATCTGCTCTCAACCGACTAATCAGCTAATGGGGTTCGTTCTTCTTTATGTAGACTTTTTCTTGTGTGAATTCCATCAAGTGCTTGTTTCCATTTTTGTTTATTACTAAATTATTACTAATGACAACAACTGTTCAATATAGTTTGTCTATATTACAAATCAACCTCTTTTATTTTAAAAATGGCTTCGATTGTTTTTATGCTCGTGGGTGTGCTTATTCAATGATACGTTGGTGGCCATTTGAATGGATAATTGATTGATGACATATCTTATGTCAATTGAGTTTTGTTTATGTCTAAATATAAAGTGTGGCCCTTAATTGTTCTTGTTAATGGTAAAATGATAGACCGA

mRNA sequence

GACATTTGGGGTTGATTATGGGCCTAATGAGTTCAGCGGTTTTGTAAGGGACCTATCATTGCCAAACTCAAATAAAAAATTGATTTATTCGAGCAATTAATCGCATCGAGGGCTCGGAAGGATTCGGGCTTGATGGAGTCTTGACTCACATTCGATTGCGAATGAGTCTGAATGTGCATAACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGCAATACGAGATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAGAGTAAGGTGGACTATATGGGATCAGGGGATGGAACAATTTATTTGAAGCTCTCAGTTCTTAAGTGGCGATGAATATGCATTGACAAATGACATCTTAAAAGGGTGAATCATCTGCTCTCAACCGACTAATCAGCTAATGGGGTTCGTTCTTCTTTATGTAGACTTTTTCTTGTGTGAATTCCATCAAGTGCTTGTTTCCATTTTTGTTTATTACTAAATTATTACTAATGACAACAACTGTTCAATATAGTTTGTCTATATTACAAATCAACCTCTTTTATTTTAAAAATGGCTTCGATTGTTTTTATGCTCGTGGGTGTGCTTATTCAATGATACGTTGGTGGCCATTTGAATGGATAATTGATTGATGACATATCTTATGTCAATTGAGTTTTGTTTATGTCTAAATATAAAGTGTGGCCCTTAATTGTTCTTGTTAATGGTAAAATGATAGACCGA

Coding sequence (CDS)

ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG

Protein sequence

MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET*
Homology
BLAST of CsGy5G002720 vs. ExPASy Swiss-Prot
Match: A4XKC6 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-15
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 0

Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQD----FQKMISEFSLAGF 82
           R+L LD+G + +G+A+SDP    A P  VL       DL  +D      K+ +E  +   
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVL-------DLQKEDLYSCLDKIFNEHQIEKI 61

Query: 83  IVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLNLL 142
           ++GYP  +   +PD    K+  ID++C +  +   V    WDE F++K VE +++  N+ 
Sbjct: 62  VIGYPVSKF--HPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVS 121

Query: 143 PAVSKTIIDKFAAVGILQGYLDYFN 162
               K ++DK AAV ILQGYLD+ N
Sbjct: 122 WQKRKKVVDKLAAVYILQGYLDFIN 137

BLAST of CsGy5G002720 vs. ExPASy Swiss-Prot
Match: B9MRK7 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=Athe_1211 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.0e-15
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 0

Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACP-LSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVG 82
           R+L LD+G+  VG+A+SDP    A P +++ LR K     + ++  K+   +++   ++G
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQGYNIEKVVIG 61

Query: 83  YPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAV 142
           YP  +L  +PD    K+  ID++  K G    V+   WDE F++K VE +I    L    
Sbjct: 62  YPLSKL--HPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDE-ELNWKR 121

Query: 143 SKTIIDKFAAVGILQGYLDYFN 162
            K IIDK AAV ILQGYLD++N
Sbjct: 122 KKKIIDKVAAVYILQGYLDFYN 136

BLAST of CsGy5G002720 vs. ExPASy Swiss-Prot
Match: Q1QL26 (Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14) OX=323097 GN=Nham_2279 PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 0

Query: 20  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFI 79
           E G L+GLD+G K +G+AVSDPD ++A  +  L RK  T D  A     +  E + AGF+
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 76

Query: 80  VGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPA 139
           +G P +      P A   + F  +L    +L  +    WDE  ++  VE  +  +++  A
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNL---ARLTDLAIGLWDERLSTVAVERELIGMDMSRA 136

Query: 140 VSKTIIDKFAAVGILQGYLD 159
               +ID+ AA+ ILQG LD
Sbjct: 137 KRAKVIDEHAAIFILQGALD 151

BLAST of CsGy5G002720 vs. ExPASy Swiss-Prot
Match: Q3AEN4 (Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=CHY_0542 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 0

Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGY 82
           ++LGLDVGDK +G+A+SD     A  L+V+ R     DL  ++ +K+I    +   ++GY
Sbjct: 2   KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDL--EEIKKIIDLHHVTEVVIGY 61

Query: 83  PFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSK 142
           P +      P A  VK F  +L    K  G+K  FWDE  ++   E L+   ++     K
Sbjct: 62  PRNMNGTAGPRAELVKRFARELY---KFTGIKPVFWDERLSTVEAEKLLISGDISRRKRK 121

Query: 143 TIIDKFAAVGILQGYLDY 160
            +IDK AA  IL GYL+Y
Sbjct: 122 KVIDKLAATLILSGYLNY 134

BLAST of CsGy5G002720 vs. ExPASy Swiss-Prot
Match: Q52673 (Putative pre-16S rRNA nuclease OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=yqgF PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = 0

Query: 22  GRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVG 81
           G L GLD+G K +G+AVSD    IA PL  + R+K ++DL   D  K ++E  +AGF++G
Sbjct: 17  GALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDL--ADLMKTVAERQIAGFVLG 76

Query: 82  YPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVS 141
            P +      P A   + F  +L    KL  +  TFWDE  ++   E  +   +L     
Sbjct: 77  LPVNMDGSEGPRAQSTRAFARNL---EKLTPLPITFWDERLSTVAAERAMLEADLSRKRR 136

Query: 142 KTIIDKFAAVGILQGYLD 159
             ++D  AA  ILQG LD
Sbjct: 137 AELVDHVAAGFILQGALD 149

BLAST of CsGy5G002720 vs. NCBI nr
Match: XP_004143911.1 (uncharacterized protein LOC101219574 [Cucumis sativus] >XP_011654757.1 uncharacterized protein LOC101219574 [Cucumis sativus] >KGN50104.1 hypothetical protein Csa_000396 [Cucumis sativus])

HSP 1 Score: 345 bits (886), Expect = 5.71e-120
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169
           FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

BLAST of CsGy5G002720 vs. NCBI nr
Match: XP_008437257.1 (PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo])

HSP 1 Score: 304 bits (778), Expect = 1.68e-103
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

BLAST of CsGy5G002720 vs. NCBI nr
Match: XP_038875331.1 (putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida] >XP_038875332.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida])

HSP 1 Score: 290 bits (742), Expect = 5.16e-98
Identity = 141/168 (83.93%), Postives = 154/168 (91.67%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL LFRDL KR+ LEHGRLLGLDVGDKYVGLAVSDPDNKIA PLSVL+RKKT M 
Sbjct: 1   MKYVKPLNLFRDLLKRNGLEHGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DF+++IS+FSLAGFIVGYP  RLR NPDA+QVKIFID+LCKTGKLE VKYTFWDEC
Sbjct: 61  LMAEDFERLISKFSLAGFIVGYPSLRLRRNPDAVQVKIFIDELCKTGKLEDVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168
           FTSKNVELLIKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTVMDKFAAVGILQGYLDYFNRRPELEE 168

BLAST of CsGy5G002720 vs. NCBI nr
Match: XP_022957830.1 (uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957832.1 uncharacterized protein LOC111459253 [Cucurbita moschata])

HSP 1 Score: 286 bits (731), Expect = 2.45e-96
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELDE 168

BLAST of CsGy5G002720 vs. NCBI nr
Match: XP_022995255.1 (uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharacterized protein LOC111490857 [Cucurbita maxima])

HSP 1 Score: 285 bits (730), Expect = 3.48e-96
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE 168

BLAST of CsGy5G002720 vs. ExPASy TrEMBL
Match: A0A0A0KMK7 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 2.76e-120
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169
           FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

BLAST of CsGy5G002720 vs. ExPASy TrEMBL
Match: A0A1S3ATQ4 (putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=3 SV=1)

HSP 1 Score: 304 bits (778), Expect = 8.13e-104
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

BLAST of CsGy5G002720 vs. ExPASy TrEMBL
Match: A0A6J1H0B7 (uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC111459253 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 1.19e-96
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELDE 168

BLAST of CsGy5G002720 vs. ExPASy TrEMBL
Match: A0A6J1K3L4 (uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857 PE=3 SV=1)

HSP 1 Score: 285 bits (730), Expect = 1.69e-96
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE 168

BLAST of CsGy5G002720 vs. ExPASy TrEMBL
Match: A0A6J1E3H7 (uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026145 PE=3 SV=1)

HSP 1 Score: 278 bits (712), Expect = 8.42e-94
Identity = 137/166 (82.53%), Postives = 146/166 (87.95%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL +FRDL  R+ LE GR LGLDVGDKYVGLAVSDPDN IA PLSVLLRKKT M 
Sbjct: 1   MKYVKPLNMFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+D Q++ISE SLAGFIVGYPFDR R N DA+QVKIFIDDLCKTG LEGVKYTFWDEC
Sbjct: 61  LMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL 166
           FTSKNVELLIKPL L P +SKTI+DKFAAVGILQGYLDY NRRPEL
Sbjct: 121 FTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYHNRRPEL 166

BLAST of CsGy5G002720 vs. TAIR 10
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 4.3e-52
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 0

Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL L  +  K      GR LGLDVGDKYVGLA+SDP N +A PLSVLLRKK+ +D
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ ++  FS++G +VGYPF +L N  D + V +FI++L KT KL+ VKYT+WDE 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR 163
            +SK VEL++KPLNL P   KT++DK AAV ILQ YLDY NR
Sbjct: 121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANR 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A4XKC65.4e-1535.17Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A... [more]
B9MRK77.0e-1538.03Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1... [more]
Q1QL267.7e-1435.00Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain DSM 10229 / N... [more]
Q3AEN41.3e-1336.23Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC... [more]
Q526731.7e-1336.23Putative pre-16S rRNA nuclease OS=Rhodobacter capsulatus (strain ATCC BAA-309 / ... [more]
Match NameE-valueIdentityDescription
XP_004143911.15.71e-120100.00uncharacterized protein LOC101219574 [Cucumis sativus] >XP_011654757.1 uncharact... [more]
XP_008437257.11.68e-10387.57PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo][more]
XP_038875331.15.16e-9883.93putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida] >XP_038875332.1 pu... [more]
XP_022957830.12.45e-9684.52uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 unchar... [more]
XP_022995255.13.48e-9684.52uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharac... [more]
Match NameE-valueIdentityDescription
A0A0A0KMK72.76e-120100.00YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 ... [more]
A0A1S3ATQ48.13e-10487.57putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348274... [more]
A0A6J1H0B71.19e-9684.52uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC1114592... [more]
A0A6J1K3L41.69e-9684.52uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857... [more]
A0A6J1E3H78.42e-9482.53uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
Match NameE-valueIdentityDescription
AT3G52905.14.3e-5259.88Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 22..126
e-value: 6.8E-17
score: 72.1
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMTIGR00250TIGR00250coord: 25..158
e-value: 1.7E-13
score: 48.7
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 23..158
e-value: 1.1E-25
score: 90.7
IPR005227Putative pre-16S rRNA nucleasePANTHERPTHR33317POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 1..165
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 22..161
score: 16.81423
IPR005227Putative pre-16S rRNA nucleaseCDDcd16964YqgFcoord: 24..158
e-value: 2.48811E-29
score: 102.951
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 21..164
e-value: 1.4E-28
score: 101.6
NoneNo IPR availablePANTHERPTHR33317:SF1POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 1..165
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 22..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G002720.2CsGy5G002720.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000967 rRNA 5'-end processing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006364 rRNA processing