CsGy5G001305 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G001305
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionGlycine--tRNA ligase beta subunit
LocationGy14Chr5: 782329 .. 782493 (+)
RNA-Seq ExpressionCsGy5G001305
SyntenyCsGy5G001305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTCGTATCCGTACTGGCAGAGATTCTTGAGGAGTACACGGTGGTGCTCTCCGACGTCCTCCGCCAGCTCTTTTACTCCGCCCCATTTCCCCACCGCGTTCGATTTCTCATCCTTCATAATCTCCCTTTCGCCGATCGCCCAACCGCCCTCGCCGCTTAA

mRNA sequence

ATGATGCTCGTATCCGTACTGGCAGAGATTCTTGAGGAGTACACGGTGGTGCTCTCCGACGTCCTCCGCCAGCTCTTTTACTCCGCCCCATTTCCCCACCGCGTTCGATTTCTCATCCTTCATAATCTCCCTTTCGCCGATCGCCCAACCGCCCTCGCCGCTTAA

Coding sequence (CDS)

ATGATGCTCGTATCCGTACTGGCAGAGATTCTTGAGGAGTACACGGTGGTGCTCTCCGACGTCCTCCGCCAGCTCTTTTACTCCGCCCCATTTCCCCACCGCGTTCGATTTCTCATCCTTCATAATCTCCCTTTCGCCGATCGCCCAACCGCCCTCGCCGCTTAA

Protein sequence

MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA*
Homology
BLAST of CsGy5G001305 vs. NCBI nr
Match: XP_011654666.1 (uncharacterized protein LOC105435431 [Cucumis sativus] >KGN49959.1 hypothetical protein Csa_000696 [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 5.86e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54
          MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

BLAST of CsGy5G001305 vs. NCBI nr
Match: XP_008437471.1 (PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 2.80e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54
          MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFP RVRFLILHNLPFADRPTAL+A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of CsGy5G001305 vs. NCBI nr
Match: XP_038907007.1 (uncharacterized protein LOC120092849 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 8.79e-21
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54
          MMLVSVLAEILEEYT VL +VLRQLF+SAPFP R+RFLILHNLPF DRP+ + A
Sbjct: 1  MMLVSVLAEILEEYTAVLVEVLRQLFHSAPFPRRIRFLILHNLPFVDRPSGVTA 54

BLAST of CsGy5G001305 vs. NCBI nr
Match: XP_022970120.1 (uncharacterized protein LOC111469109 [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 1.17e-18
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 51

BLAST of CsGy5G001305 vs. NCBI nr
Match: XP_023520510.1 (uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 1.24e-18
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 51

BLAST of CsGy5G001305 vs. ExPASy TrEMBL
Match: A0A0A0KM75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 2.84e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54
          MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

BLAST of CsGy5G001305 vs. ExPASy TrEMBL
Match: A0A1S3AUP0 (uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.36e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54
          MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFP RVRFLILHNLPFADRPTAL+A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of CsGy5G001305 vs. ExPASy TrEMBL
Match: A0A6J1I1Z0 (uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.68e-19
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 51

BLAST of CsGy5G001305 vs. ExPASy TrEMBL
Match: A0A6J1EQP1 (uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC111435715 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.65e-19
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 51

BLAST of CsGy5G001305 vs. ExPASy TrEMBL
Match: A0A6J1DZC9 (uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025999 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.63e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALA 53
          MMLVSV+AE+LEEYTV+L++VLRQLF SAPFP RVRFLILHNLP  +   + A
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSSA 53

BLAST of CsGy5G001305 vs. TAIR 10
Match: AT1G33055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-09
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTAL 53
          M+LV+++AE+++EYTVVL+ V+  LF  APFP R+R  IL++LPF    T+L
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTSL 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_011654666.15.86e-28100.00uncharacterized protein LOC105435431 [Cucumis sativus] >KGN49959.1 hypothetical ... [more]
XP_008437471.12.80e-2696.30PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo][more]
XP_038907007.18.79e-2179.63uncharacterized protein LOC120092849 [Benincasa hispida][more]
XP_022970120.11.17e-1880.39uncharacterized protein LOC111469109 [Cucurbita maxima][more]
XP_023520510.11.24e-1880.39uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A0A0KM752.84e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1[more]
A0A1S3AUP01.36e-2696.30uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=... [more]
A0A6J1I1Z05.68e-1980.39uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109... [more]
A0A6J1EQP16.65e-1980.39uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1DZC95.63e-1671.70uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
AT1G33055.19.5e-0951.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48175OS04G0581700 PROTEINcoord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G001305.1CsGy5G001305.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity