CsGy5G000880 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G000880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L9
Location	Gy14Chr5: 492785 .. 494427 (+)
RNA-Seq Expression	CsGy5G000880
Synteny	CsGy5G000880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATCGGCCGACCTCTTCATCGTTCAACTCCAGAGAAAGGGAGAGAGCAAGTTTCAGTAGAAAAGATGAAGACGATCCTTTCATCTGAAACTATGGATATCCCCGACGGGGTCAAAATCAAAGTTAACGCGAAAATCATTGAGGTCGAAGGCCCTCGAGGTAAACTCGTTCGTAATTTTAAGCATCTGAATCTCGATTTCCAGTTGATCACTGACGAGGCTACCGGAAAGAAGAAGCTGAAGATTGATGCATGGTTTGGCTCCAGGAAGACTTCCGCTGCCATTCGCACTGCTCTTAGCCATGTTGAGAATCTCATCACCGGTGTCACCAAGGGCTACAGGTACAAGATGCGATTTGTTTACGCTCACTTTCCCATTAATGCTAGCATCACCAACACCAACAAATCCATCGAGATCCGTAACTTTCTTGGCGAGAAGAAGGTATAACTCTTTTTCTCTCGCCCTTTTATCATTAATTGCATTTTCTGGATTCTGGGTACTAGATTCTTGTTTGCTGCTGCTTTTGCATAGCTTAATTGAATGCCGAATGTTTAACGGTTAAGGGTTAAGAATGTTTGATTTGCTTGCTGTTTTAAACATGTTTGCTTAAGCACTCCTAGCATTATGAAGTCTCGTCTTCTCTTCTTCTGCCTTTATGATTTGTTGAGTATTTAAGATAAAAATCAAGATGTTTTTTTAAAGGAGAAAAATGTTTCTTTGTTGGGTTCTCTTTACTTGATTCTCTGATTTTCTATGGGGATTGTCGCTTAGCTTCGCTACTGAGAATCAATTAAAAAAATGGTAGTTAACAAACCTATTATGCAGAATTATTCATCAGTAAATTTATTGTAGGGACGTATTTTTGTTGAAAAATGTTTTCCGAATGCAACGATATAAGGTTTTCTGTTCATAGGAATGAAAAGTTACGAAGTAGTTTGCAGCAAGCCAACAACTCGAATTACTAAATACCAGGAGAATTCACAAACCATTTGCTGGATATAAATAACTGAAATATAAAATCATCCACGAGGAATCGAAATTGGAAGCTACACGCCATAAAATCAGTTACTACAACTTGCTTGCGACTACATGAATAATGCTAAATGATGAGCAACTGCAAACATTGTTTGGGGTACTAGGTCGTGGAGCTAGTTTTAAGAACAATTTAGAGGGGAAAAGGTCAGATGGTTGAGGAGAATGTGAAAGAGAGGATCTTTAGAGACATGACATCGAGTTTGAGTGTTTTTGAAGGACAGAATTAACCGATTGCTTTGGATACAGTTATTTGACTATTTTATCCATAGCTCAGGTACCTTATGTTCAAAACAAGTGTTTTAATATATCTGGTATATATTCCAGTTAATGTTTATGATAAATCCCATGTTTGATATGTTTTTGTTATATTTAGTATGATTTGTGGATTCAATGTTTCCATTTTCTTTGTGCAATAGGTGCGTAAAGTAGATATGCTTGATGGAGTATCTATTATTCGATCTGAGAAAGTCAAGGATGAGTTAGTCTTGGATGGTAACGATATTGAACTTGTATCTCGATCTGCTGCCTTGATTAACCAGGTATTTTCTTCACCCATGCTACATTTTGATTGGTTCTTTGTTGCAAAGTTTGTGCCTGCACGGGCATAG

mRNA sequence

ATTATCGGCCGACCTCTTCATCGTTCAACTCCAGAGAAAGGGAGAGAGCAAGTTTCAGTAGAAAAGATGAAGACGATCCTTTCATCTGAAACTATGGATATCCCCGACGGGGTCAAAATCAAAGTTAACGCGAAAATCATTGAGGTCGAAGGCCCTCGAGGTAAACTCGTTCGTAATTTTAAGCATCTGAATCTCGATTTCCAGTTGATCACTGACGAGGCTACCGGAAAGAAGAAGCTGAAGATTGATGCATGGTTTGGCTCCAGGAAGACTTCCGCTGCCATTCGCACTGCTCTTAGCCATGTTGAGAATCTCATCACCGGTGTCACCAAGGGCTACAGGTACAAGATGCGATTTGTTTACGCTCACTTTCCCATTAATGCTAGCATCACCAACACCAACAAATCCATCGAGATCCGTAACTTTCTTGGCGAGAAGAAGGTGCGTAAAGTAGATATGCTTGATGGAGTATCTATTATTCGATCTGAGAAAGTCAAGGATGAGTTAGTCTTGGATGGTAACGATATTGAACTTGTATCTCGATCTGCTGCCTTGATTAACCAGGTATTTTCTTCACCCATGCTACATTTTGATTGGTTCTTTGTTGCAAAGTTTGTGCCTGCACGGGCATAG

Coding sequence (CDS)

ATGAAGACGATCCTTTCATCTGAAACTATGGATATCCCCGACGGGGTCAAAATCAAAGTTAACGCGAAAATCATTGAGGTCGAAGGCCCTCGAGGTAAACTCGTTCGTAATTTTAAGCATCTGAATCTCGATTTCCAGTTGATCACTGACGAGGCTACCGGAAAGAAGAAGCTGAAGATTGATGCATGGTTTGGCTCCAGGAAGACTTCCGCTGCCATTCGCACTGCTCTTAGCCATGTTGAGAATCTCATCACCGGTGTCACCAAGGGCTACAGGTACAAGATGCGATTTGTTTACGCTCACTTTCCCATTAATGCTAGCATCACCAACACCAACAAATCCATCGAGATCCGTAACTTTCTTGGCGAGAAGAAGGTGCGTAAAGTAGATATGCTTGATGGAGTATCTATTATTCGATCTGAGAAAGTCAAGGATGAGTTAGTCTTGGATGGTAACGATATTGAACTTGTATCTCGATCTGCTGCCTTGATTAACCAGGTATTTTCTTCACCCATGCTACATTTTGATTGGTTCTTTGTTGCAAAGTTTGTGCCTGCACGGGCATAG

Protein sequence

MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNFLGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQVFSSPMLHFDWFFVAKFVPARA*

Homology

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BLAST of CsGy5G000880 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.5e-79
Identity = 153/166 (92.17%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETM+IPDGV IKVNAK+IEVEGPRGKLVR+FKHLNLDF LITDE  GKKKLKI
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKVD+LDGVSIIRSEKVKDE+VLDGNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQ 165

[Close]

BLAST of CsGy5G000880 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-75
Identity = 142/166 (85.54%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.0e-75
Identity = 139/166 (83.73%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NKSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 269.6 bits (688), Expect = 2.6e-71
Identity = 134/166 (80.72%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTIL+SETM+IP+GV ++V AK++ VEGPRGKL RNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN+N +IEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKVDML+GV+I+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162

[Close]

BLAST of CsGy5G000880 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.2e-46
Identity = 94/166 (56.63%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILS++T+DIPD V + +  + + V+GPRG L R F H+NL+ +L+  +   +KKL++
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKK---QKKLRV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           D W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I  T   +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS SAALI Q
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQ 163

[Close]

BLAST of CsGy5G000880 vs. NCBI nr
Match: XP_004145906.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_000354 [Cucumis sativus])

HSP 1 Score: 323 bits (829), Expect = 1.45e-110
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. NCBI nr
Match: XP_008437538.1 (PREDICTED: 60S ribosomal protein L9 [Cucumis melo] >ADN33776.1 60S ribosomal protein l9 [Cucumis melo subsp. melo] >KAA0042589.1 60S ribosomal protein L9 [Cucumis melo var. makuwa] >TYK05992.1 60S ribosomal protein L9 [Cucumis melo var. makuwa])

HSP 1 Score: 319 bits (818), Expect = 6.90e-109
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. NCBI nr
Match: KAG6579363.1 (60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016849.1 60S ribosomal protein L9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319 bits (818), Expect = 7.14e-109
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKL+RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. NCBI nr
Match: XP_038876175.1 (60S ribosomal protein L9 [Benincasa hispida])

HSP 1 Score: 319 bits (817), Expect = 9.80e-109
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKV+AKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVSAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSI+RSEKVKDEL+LDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELILDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. NCBI nr
Match: XP_022922256.1 (60S ribosomal protein L9 [Cucurbita moschata])

HSP 1 Score: 318 bits (815), Expect = 2.05e-108
Identity = 161/166 (96.99%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKL+RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVR+VDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRRVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy TrEMBL
Match: A0A0A0KJL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139920 PE=3 SV=1)

HSP 1 Score: 323 bits (829), Expect = 7.04e-111
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy TrEMBL
Match: A0A5D3C437 (60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00890 PE=3 SV=1)

HSP 1 Score: 319 bits (818), Expect = 3.34e-109
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy TrEMBL
Match: E5GBD5 (60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 319 bits (818), Expect = 3.34e-109
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy TrEMBL
Match: A0A1S3AUU6 (60S ribosomal protein L9 OS=Cucumis melo OX=3656 GN=LOC103482923 PE=3 SV=1)

HSP 1 Score: 319 bits (818), Expect = 3.34e-109
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN+NKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. ExPASy TrEMBL
Match: A0A6J1E3M6 (60S ribosomal protein L9 OS=Cucurbita moschata OX=3662 GN=LOC111430293 PE=3 SV=1)

HSP 1 Score: 318 bits (815), Expect = 9.91e-109
Identity = 161/166 (96.99%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKL+RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 166
           LGEKKVR+VDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQ
Sbjct: 121 LGEKKVRRVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQ 166

[Close]

BLAST of CsGy5G000880 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 283.9 bits (725), Expect = 9.6e-77
Identity = 142/166 (85.54%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQ 166

[Close]

BLAST of CsGy5G000880 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 283.9 bits (725), Expect = 9.6e-77
Identity = 142/166 (85.54%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPD V IKV+AK+IEVEGPRGKLVR+FKHLNLDFQLI D  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQ 166

[Close]

BLAST of CsGy5G000880 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 282.7 bits (722), Expect = 2.1e-76
Identity = 139/166 (83.73%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60
           MKTILSSETMDIPDGV IKVNAK+IEVEGPRGKL R+FKHLNLDFQLI D+ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NKSIEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQ 167
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQ
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQ 166

The following BLAST results are available for this feature:

BLAST of CsGy5G000880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	4.5e-79	92.17	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
P49209	1.3e-75	85.54	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
Q9SZX9	3.0e-75	83.73	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49210	2.6e-71	80.72	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	2.2e-46	56.63	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of CsGy5G000880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145906.1	1.45e-110	100.00	60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_...	[more]
XP_008437538.1	6.90e-109	98.19	PREDICTED: 60S ribosomal protein L9 [Cucumis melo] >ADN33776.1 60S ribosomal pro...	[more]
KAG6579363.1	7.14e-109	97.59	60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_038876175.1	9.80e-109	97.59	60S ribosomal protein L9 [Benincasa hispida]	[more]
XP_022922256.1	2.05e-108	96.99	60S ribosomal protein L9 [Cucurbita moschata]	[more]

BLAST of CsGy5G000880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJL8	7.04e-111	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139920 PE=3 SV=1	[more]
A0A5D3C437	3.34e-109	98.19	60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
E5GBD5	3.34e-109	98.19	60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3AUU6	3.34e-109	98.19	60S ribosomal protein L9 OS=Cucumis melo OX=3656 GN=LOC103482923 PE=3 SV=1	[more]
A0A6J1E3M6	9.91e-109	96.99	60S ribosomal protein L9 OS=Cucurbita moschata OX=3662 GN=LOC111430293 PE=3 SV=1	[more]

BLAST of CsGy5G000880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33120.1	9.6e-77	85.54	Ribosomal protein L6 family	[more]
AT1G33140.1	9.6e-77	85.54	Ribosomal protein L6 family	[more]
AT4G10450.1	2.1e-76	83.73	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..170 e-value: 1.2E-27 score: 94.5
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..177
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 102..167 e-value: 4.7E-7 score: 30.4 coord: 12..90 e-value: 2.8E-11 score: 43.9
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 7.6E-30 score: 105.2
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..173 e-value: 4.0E-35 score: 122.0
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..167
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G000880.2	CsGy5G000880.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome