CsGy5G000870 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G000870
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTrafficking protein particle complex subunit
LocationGy14Chr5: 487532 .. 491561 (-)
RNA-Seq ExpressionCsGy5G000870
SyntenyCsGy5G000870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAAAGTGCAGTTTGGAGTTAGGACTCCGAGAGACGCGACTATCGATTTGCTTAGGCCTTTCACAAACGACGTTGGTTCACTCTGTCCTGGTCGTAGGGGTCTCCGGTGCCTTAAGGCTCCGATCTGCTGACGTTGTTACCGGCAATCATTGCGTGACGAATCAAGAGCTTCGTCGTTGAATTGATCGCTTTCTTTACTTTGTAGTCTCTGCTCTCTGAGGTATCTTTCTAGTCTCCATTGTTTGATTTTGATGCTTCTTCTTGAATCTGTCACCGTCCAGCTCATTGCTGGTTATCTCTCCATTTCCCCCTGCTCACAGTCTCTTATACGATCCATAAGTAAAATCCATTTTCCTTGGGATTATGTATGAATAGGACTCCCAATTTTACACTAGATTTGTTTCTAACTATATTGAGTGGTTCTGTAGAGAGCCCAAAGGGAAATGCATCTGGGTACAGCTTCTTGCTTTAGTGAATCCTGATTTGGGTCGGGTTAGATTTTACCTGTTGACAATTCGCTATTTTATTTTTAACCTCAATGAATTATTAGGAATGATTGAATTATTAGTTGCTTTGCTAGGCAATTGATTGTAGAGTTGAGTGGAAATGTTGGGGTTTTGTTAGAATCTTAGATTTCTTAGATCATTTCATATGACAGTTGATTTGATTCAGTTTGGTTTATTCCAGAAATCATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCAACAGCAACTGGAAACAATGTTCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTATAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGGTTTATGTTTCTTCCTTCTTTGGGAAACTACTTTAGTTTATGGTGTGGCTAGTATATGTAGTGATCCAACCAGATAGGAGATTAATGCAAACCATAATCTTAATAACGTGACAAATGCATTGCCCTTTTATGGTTGGTGGCAATAACTAGTAAGATGTCTAATTTGATTGTAGATTTTGATTTTGATCTTTCAAAGTATTAACAACTTACTGGAAAATGATGAGCTGCTTTTGGGAGTTAGGTTTTGAAGCGATAACTTTTTTTACTTTCTTTGATACAGTGCTGACAAAGGAAATCTTGGCGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTTCCTTAACCCTCCTTCTTCCGTTCTTGTTTATGTTTTCCATAGTAGCTTTATGCATGTCTACTTGAATTGTTAAAATACTGAACTTGATGTATGACTATGGCATAATCGAAGCGGACTACATATGAATTATTGAGATTTAATGAAACCAGTATTTATTTTATGTCATGGACTTGTTTATTTATTGTTATTGCCAAGGTATATGGGAGTTTTAAAGTATCCTTCTCTCTGAACTTGTTGTGTCACATGGATAATTTAAGTTTTTATTTGTAACCTCGCAAAAAATGATCTTGCTTTTCTTTCTTCTTCTTAGAAAATTCATTTTCCTTGGCGACGATTAGTAGTTTTAACCAATATATATATATATATATATATATATATATATATATATATTTATTTGCTTCTTGTTTTACACTTGAAGAATTAAAGTTGATCTTTTGGGAGAAGCCATGTAAAGCCGCTATTTTAAAATTGTTTCTGTTTTGAAAAAGAATTAACCAAATGAGGAAAATTGGGATCACTGTGACTATGGGGTAAATTAATTTTAAGTTTGATGGATCATTTCTTTGTTTTCAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTAAACTGTTAGCTTTGGTTGATGCATATGTTCTATATACCAAACGTAGTAATTTATCTCAAAGAAACTCCGTTTGAAATCTTGCTGAATCAAGTCAATATCTTTGATGAATTTGAATTTGTAATGCATGCATTCATTGGTTTCAATTTACAAAAGATTAAATGGCGTCTGGGGAAAGGGAACTTATTATTGGTTATTGACTTTAATCATAACTTATGTAAGTCTGTCCCAGAGGCCCTTTCTGGGATATTTTAGGCCTTACTAGATTCTCCCTTTAGACCACTTCAAATCCTGGGGTTGAGCTTGGTTTCAATATGATTTCTATGATCTCACGAACATCTATGTATGGTTACCACATGTTAGTAGTTTAGATGTACTGATATTGAATGGTAGCACATCGTCCTTCTTTTCTACTTCCAAAGAAAAAGAGTAAGAAAACTATCACCCCCTAAAGATGGTAAGATTTTTGGAGATTTAACTGAGCTATAGCCTATAGGGCTATAATGAAATTGAAAATTTTAAATCATATAAGCGTAGTTGAAACCAAAGTCAAACCATATGGACAATTCAATCCTTCTTTTATGTGGGAGAACTTTTGTTACATTCTCCTGTTTACTCTCTTTAACAAAAAATTTGAAATGTTTCAAAATCTTCTTTACAGACTTAACCCAACCTCAAACGATTCATGCTTTTGTTTGCTATGTTATCGTTCTTATGGTGAAAATAAAGTTAATGTATGTTTGTCCTCGCAACACAATATCAACTCTCCCTTGATTTTGCTTTCTGCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAGAAATCAGAGGTAGCGACTACTCTGCCGATTTAGTTTCATTCAATTTGTATGGTTTGTCTATCTTTTGTCTACGAATGAATGTGATTCACTGGATAATGGTGCAGTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTATCTTTTACCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGTAACTTCTCTGTGATAGTAGTGGTGGAAGAAAAATGAAAAAAAGAAGAAGAAAGAATTCTAGTACAACTGTTTGCTGCTCATGTATAATTTGTAGTAATGCAACTACAGTTCTTGTTTCATTTACAAACGTACCATTACATTAGTCGTCGTTTGTGTAAAAAAATGTGAAAGGTTTCAAATGTGACATATTCCCTGTTTGCTCAACACCTAGAATCCCACCCATCATAATATGGGAAGATTGTCCATCTTGAGGAATGGATCTTGGTGCTTTAAGGTTTGTAGGCCTCAACCAATGGAAGGATACATTTGTAGCTACGGCTAGCCCCCAATGGATTCCTGACGTCTAGCCCCCAATTTTTGACCCC

mRNA sequence

TCTAAAGTGCAGTTTGGAGTTAGGACTCCGAGAGACGCGACTATCGATTTGCTTAGGCCTTTCACAAACGACGTTGGTTCACTCTGTCCTGGTCGTAGGGGTCTCCGGTGCCTTAAGGCTCCGATCTGCTGACGTTGTTACCGGCAATCATTGCGTGACGAATCAAGAGCTTCGTCGTTGAATTGATCGCTTTCTTTACTTTGTAGTCTCTGCTCTCTGAGAAATCATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCAACAGCAACTGGAAACAATGTTCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTATAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGACAAAGGAAATCTTGGCGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAGAAATCAGAGTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTATCTTTTACCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGTAACTTCTCTGTGATAGTAGTGGTGGAAGAAAAATGAAAAAAAGAAGAAGAAAGAATTCTAGTACAACTGTTTGCTGCTCATGTATAATTTGTAGTAATGCAACTACAGTTCTTGTTTCATTTACAAACGTACCATTACATTAGTCGTCGTTTGTGTAAAAAAATGTGAAAGGTTTCAAATGTGACATATTCCCTGTTTGCTCAACACCTAGAATCCCACCCATCATAATATGGGAAGATTGTCCATCTTGAGGAATGGATCTTGGTGCTTTAAGGTTTGTAGGCCTCAACCAATGGAAGGATACATTTGTAGCTACGGCTAGCCCCCAATGGATTCCTGACGTCTAGCCCCCAATTTTTGACCCC

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCAACAGCAACTGGAAACAATGTTCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTATAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGACAAAGGAAATCTTGGCGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAG

Protein sequence

MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL*
Homology
[Close]
BLAST of CsGy5G000870 vs. ExPASy Swiss-Prot
Match: Q557G3 (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 83  VPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYVV 142
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 143 KNPIYSPGTPIRCELFNTSLDQYVR 167
           KNPIY  GT ++C+ F   L+ Y++
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLK 135

[Close]
BLAST of CsGy5G000870 vs. ExPASy Swiss-Prot
Match: Q5NCF2 (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of CsGy5G000870 vs. ExPASy Swiss-Prot
Match: Q2KMM2 (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of CsGy5G000870 vs. ExPASy Swiss-Prot
Match: Q17QI1 (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of CsGy5G000870 vs. ExPASy Swiss-Prot
Match: Q9Y5R8 (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           VKNP+   G  ++ ELF + LD YVR++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of CsGy5G000870 vs. NCBI nr
Match: XP_004145907.1 (trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1 trafficking protein particle complex subunit 1 [Cucumis sativus] >KGN49914.1 hypothetical protein Csa_000153 [Cucumis sativus])

HSP 1 Score: 362 bits (929), Expect = 1.58e-126
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169

[Close]
BLAST of CsGy5G000870 vs. NCBI nr
Match: XP_008437540.1 (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008437541.1 PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 358 bits (919), Expect = 5.28e-125
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQYVR+IL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSIL 169

[Close]
BLAST of CsGy5G000870 vs. NCBI nr
Match: XP_038906999.1 (trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000.1 trafficking protein particle complex subunit 1 [Benincasa hispida])

HSP 1 Score: 354 bits (909), Expect = 1.71e-123
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168
           RTGDLRD LKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVR+I
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of CsGy5G000870 vs. NCBI nr
Match: XP_022922155.1 (trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022922156.1 trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022922157.1 trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022973065.1 trafficking protein particle complex subunit 1-like [Cucurbita maxima] >XP_022973067.1 trafficking protein particle complex subunit 1-like [Cucurbita maxima] >XP_022973068.1 trafficking protein particle complex subunit 1-like [Cucurbita maxima] >XP_023549605.1 trafficking protein particle complex subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023549606.1 trafficking protein particle complex subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023549607.1 trafficking protein particle complex subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350 bits (899), Expect = 5.94e-122
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQYVRTIL
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTIL 169

[Close]
BLAST of CsGy5G000870 vs. NCBI nr
Match: KAA0042588.1 (trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05991.1 trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (907), Expect = 8.50e-122
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY++ I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYLQAI 168

[Close]
BLAST of CsGy5G000870 vs. ExPASy TrEMBL
Match: A0A0A0KM26 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5G139910 PE=3 SV=1)

HSP 1 Score: 362 bits (929), Expect = 7.63e-127
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169

[Close]
BLAST of CsGy5G000870 vs. ExPASy TrEMBL
Match: A0A1S3AUA1 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103482924 PE=3 SV=1)

HSP 1 Score: 358 bits (919), Expect = 2.56e-125
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQYVR+IL
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSIL 169

[Close]
BLAST of CsGy5G000870 vs. ExPASy TrEMBL
Match: A0A6J1IAE9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111471566 PE=3 SV=1)

HSP 1 Score: 350 bits (899), Expect = 2.88e-122
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQYVRTIL
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTIL 169

[Close]
BLAST of CsGy5G000870 vs. ExPASy TrEMBL
Match: A0A6J1E2F4 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111430218 PE=3 SV=1)

HSP 1 Score: 350 bits (899), Expect = 2.88e-122
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTIL 169
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQYVRTIL
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTIL 169

[Close]
BLAST of CsGy5G000870 vs. ExPASy TrEMBL
Match: A0A5D3C227 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00870 PE=3 SV=1)

HSP 1 Score: 353 bits (907), Expect = 4.12e-122
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY++ I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYLQAI 168

[Close]
BLAST of CsGy5G000870 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 328.2 bits (840), Expect = 4.0e-90
Identity = 149/168 (88.69%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIY+LYVEYVVKNPIYSPG+PI+ ELFNT+LDQYVR+I
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of CsGy5G000870 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 328.2 bits (840), Expect = 4.0e-90
Identity = 149/168 (88.69%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 169
           +TGDLR+ LKYIY+LYVEYVVKNPIYSPG+PI+ ELFNT+LDQYVR+I
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of CsGy5G000870 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 83  VPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYNLYVEYVV 142
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 143 KNPIYSPGTPIRCELFNTSLDQYVRT 168
           KNP Y    PIRCELF+ +L Q V++
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQAVQS 133

The following BLAST results are available for this feature:
BLAST of CsGy5G000870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q557G32.0e-3040.69Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44... [more]
Q5NCF22.0e-3044.59Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q2KMM22.0e-3044.59Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=... [more]
Q17QI11.3e-2943.92Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 ... [more]
Q9Y5R81.3e-2943.92Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of CsGy5G000870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145907.11.58e-126100.00trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1... [more]
XP_008437540.15.28e-12598.22PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008... [more]
XP_038906999.11.71e-12398.21trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000... [more]
XP_022922155.15.94e-12297.04trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022... [more]
KAA0042588.18.50e-12297.02trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05... [more]
BLAST of CsGy5G000870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM267.63e-127100.00Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5... [more]
A0A1S3AUA12.56e-12598.22Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A6J1IAE92.88e-12297.04Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1E2F42.88e-12297.04Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A5D3C2274.12e-12297.02Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194... [more]
BLAST of CsGy5G000870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51160.14.0e-9088.69SNARE-like superfamily protein [more]
AT1G51160.24.0e-9088.69SNARE-like superfamily protein [more]
AT5G02280.12.1e-1429.45SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
e-value: 1.6E-63
score: 227.0
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 23..167
e-value: 1.5E-48
score: 164.4
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..167
NoneNo IPR availableGENE3D3.30.450.70coord: 22..169
e-value: 1.5E-47
score: 163.2
NoneNo IPR availablePANTHERPTHR23249:SF18TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1-LIKEcoord: 1..167
NoneNo IPR availableCDDcd14855TRAPPC1_MUM2coord: 24..164
e-value: 9.71921E-69
score: 202.777
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 23..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G000870.2CsGy5G000870.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030008 TRAPP complex