CsGy5G000565 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G000565
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 316677 .. 316886 (-)
RNA-Seq Expression	CsGy5G000565
Synteny	CsGy5G000565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAAGCTGACATTATGAAGATAGCGACATTGGCAGATAAATGGGCAATAAGAAGAGACAGTAATGCATGTATGTCAGCTCAGATGGAGCTTTTTGATGTCAAACAATCAGATGAAGACGGCAGAGAAACCTCTAACACAACGCCACCAAGAAATAGCATTACATTTTACCCAAGTAATGATAGCATCTTATCAGACATTGAGTAA

mRNA sequence

ATGCAACAAGCTGACATTATGAAGATAGCGACATTGGCAGATAAATGGGCAATAAGAAGAGACAGTAATGCATGTATGTCAGCTCAGATGGAGCTTTTTGATGTCAAACAATCAGATGAAGACGGCAGAGAAACCTCTAACACAACGCCACCAAGAAATAGCATTACATTTTACCCAAGTAATGATAGCATCTTATCAGACATTGAGTAA

Coding sequence (CDS)

ATGCAACAAGCTGACATTATGAAGATAGCGACATTGGCAGATAAATGGGCAATAAGAAGAGACAGTAATGCATGTATGTCAGCTCAGATGGAGCTTTTTGATGTCAAACAATCAGATGAAGACGGCAGAGAAACCTCTAACACAACGCCACCAAGAAATAGCATTACATTTTACCCAAGTAATGATAGCATCTTATCAGACATTGAGTAA

Protein sequence

MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPSNDSILSDIE*

Homology

[Close]

BLAST of CsGy5G000565 vs. NCBI nr
Match: KGN49877.1 (hypothetical protein Csa_000168 [Cucumis sativus])

HSP 1 Score: 140 bits (354), Expect = 5.15e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPS 60
          MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPS
Sbjct: 1  MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPS 60

Query: 61 NDSILSDIE 69
          NDSILSDIE
Sbjct: 61 NDSILSDIE 69

[Close]

BLAST of CsGy5G000565 vs. ExPASy TrEMBL
Match: A0A0A0KN96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139550 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 2.49e-42
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPS 60
          MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPS
Sbjct: 1  MQQADIMKIATLADKWAIRRDSNACMSAQMELFDVKQSDEDGRETSNTTPPRNSITFYPS 60

Query: 61 NDSILSDIE 69
          NDSILSDIE
Sbjct: 61 NDSILSDIE 69

The following BLAST results are available for this feature:

BLAST of CsGy5G000565 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G000565 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49877.1	5.15e-42	100.00	hypothetical protein Csa_000168 [Cucumis sativus]	[more]

BLAST of CsGy5G000565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN96	2.49e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139550 PE=4 SV=1	[more]

BLAST of CsGy5G000565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G000565.1	CsGy5G000565.1	mRNA