CsGy5G000343 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G000343
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionImportin subunit beta-1
LocationGy14Chr5: 186933 .. 187184 (+)
RNA-Seq ExpressionCsGy5G000343
SyntenyCsGy5G000343
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACAGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

mRNA sequence

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACAGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

Coding sequence (CDS)

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACAGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

Protein sequence

MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRSGRRERPLAPPVRLAWSVPIVSLT*
Homology
[Close]
BLAST of CsGy5G000343 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 8.26e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRRERPLAPPVRLAWSVPIVSLT 83
          GRRERPLAPPVRLAWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of CsGy5G000343 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (418), Expect = 3.35e-45
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GRRERPLAPPVRLAWSVPIVSLT 83
           G+RERPLAPPVRLAWSVPIVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

[Close]
BLAST of CsGy5G000343 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 4.00e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRRERPLAPPVRLAWSVPIVSLT 83
          GRRERPLAPPVRLAWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of CsGy5G000343 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 1.62e-45
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GRRERPLAPPVRLAWSVPIVSLT 83
           G+RERPLAPPVRLAWSVPIVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

The following BLAST results are available for this feature:
BLAST of CsGy5G000343 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G000343 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49854.18.26e-52100.00hypothetical protein Csa_000509 [Cucumis sativus][more]
KAA0042542.13.35e-4598.80importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... [more]
BLAST of CsGy5G000343 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLW14.00e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1[more]
A0A5A7TGL21.62e-4598.80Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsGy5G000343 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G000343.1CsGy5G000343.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0031267 small GTPase binding