CsGy4G025490 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G025490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Late embryogenesis abundant protein group 8 protein
Location	Gy14Chr4: 30828537 .. 30828812 (+)
RNA-Seq Expression	CsGy4G025490
Synteny	CsGy4G025490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAACATGGAAGAGCAAGGACAGCACCAAATGATGGGGAAGATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

mRNA sequence

ATGTCGAACATGGAAGAGCAAGGACAGCACCAAATGATGGGGAAGATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

Coding sequence (CDS)

ATGTCGAACATGGAAGAGCAAGGACAGCACCAAATGATGGGGAAGATGGAAGAGAAGGCCCCGGTGGAAGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATATAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGTGGAGGGGCATCTTGTGCCCAAGCCTAATCAGGGCGGCGGCACCGATGCACCCACCTTGTCCGGCAGCGGCTTACCGGAGGTGCAGCCTACCACCATTGATATCGTTACCAAACAAGGCCTTATTCGTTGA

Protein sequence

MSNMEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR*

Homology

[Close]

BLAST of CsGy4G025490 vs. NCBI nr
Match: KAE8649966.1 (hypothetical protein Csa_012992 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 1.40e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSNMEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG 60
          MSNMEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG
Sbjct: 1  MSNMEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG 60

Query: 61 GGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR 91
          GGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR
Sbjct: 61 GGTDAPTLSGSGLPEVQPTTIDIVTKQGLIR 91

[Close]

BLAST of CsGy4G025490 vs. NCBI nr
Match: KAA0064662.1 (late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >TYK19929.1 late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 3.99e-53
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 4  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGT 63
          MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGT
Sbjct: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60

Query: 64 DAPTLSGSGLPEVQPTTIDIVTKQGLIR 91
          DAPTLSGSG PEVQPTTID+VTKQGLI 
Sbjct: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88

[Close]

BLAST of CsGy4G025490 vs. NCBI nr
Match: XP_023535424.1 (uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139 bits (350), Expect = 1.05e-40
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MSNMEE--QGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPN 60
          MSN EE  Q Q Q++ + EEKA VE+LLPLESSPYVKYKDLEEYKRKGYG EGHL PKPN
Sbjct: 1  MSNSEEEQQQQQQLVREKEEKASVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 60

Query: 61 QGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 90
          QGGGTDAPTLSGSG PEV+P TID VT  GL+
Sbjct: 61 QGGGTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of CsGy4G025490 vs. NCBI nr
Match: XP_022937316.1 (uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothetical protein SDJN03_13547, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024086.1 hypothetical protein SDJN02_12899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137 bits (344), Expect = 8.65e-40
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MSNMEE--QGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPN 60
          MSN EE  Q Q Q++ + EEK  VE+LLPLESSPYVKYKDLEEYKRKGYG EGHL PKPN
Sbjct: 1  MSNSEEEQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 60

Query: 61 QGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 90
          QGGGTDAPTLSGSG PEV+P TID VT  GL+
Sbjct: 61 QGGGTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of CsGy4G025490 vs. NCBI nr
Match: XP_022135734.1 (uncharacterized protein LOC111007621 [Momordica charantia])

HSP 1 Score: 131 bits (329), Expect = 2.13e-37
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 1   MSNMEEQGQHQM------MGKMEE-KAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHL 60
           MS  EEQ Q Q+      MGK EE KA VE+LLPLESSPYVKYKDLEEYKR+GYG EGHL
Sbjct: 1   MSKSEEQAQAQVQPQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHL 60

Query: 61  VPKPNQG---GGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 90
            PKPNQG   GGTDAPTLSG+G PEV+P+TID+ T QGLI
Sbjct: 61  EPKPNQGQGGGGTDAPTLSGAGFPEVKPSTIDVATNQGLI 100

[Close]

BLAST of CsGy4G025490 vs. ExPASy TrEMBL
Match: A0A5A7V8I8 (Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00410 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.93e-53
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 4  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGT 63
          MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGT
Sbjct: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60

Query: 64 DAPTLSGSGLPEVQPTTIDIVTKQGLIR 91
          DAPTLSGSG PEVQPTTID+VTKQGLI 
Sbjct: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88

[Close]

BLAST of CsGy4G025490 vs. ExPASy TrEMBL
Match: A0A0A0L5Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 1.37e-46
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 16  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 75
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE
Sbjct: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139

Query: 76  VQPTTIDIVTKQGLIR 91
           VQPTTIDIVTKQGLIR
Sbjct: 140 VQPTTIDIVTKQGLIR 155

[Close]

BLAST of CsGy4G025490 vs. ExPASy TrEMBL
Match: A0A6J1FA12 (uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC111443639 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 4.19e-40
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MSNMEE--QGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPN 60
          MSN EE  Q Q Q++ + EEK  VE+LLPLESSPYVKYKDLEEYKRKGYG EGHL PKPN
Sbjct: 1  MSNSEEEQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPN 60

Query: 61 QGGGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 90
          QGGGTDAPTLSGSG PEV+P TID VT  GL+
Sbjct: 61 QGGGTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of CsGy4G025490 vs. ExPASy TrEMBL
Match: A0A6J1C2A9 (uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007621 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 1.03e-37
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 1   MSNMEEQGQHQM------MGKMEE-KAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHL 60
           MS  EEQ Q Q+      MGK EE KA VE+LLPLESSPYVKYKDLEEYKR+GYG EGHL
Sbjct: 1   MSKSEEQAQAQVQPQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHL 60

Query: 61  VPKPNQG---GGTDAPTLSGSGLPEVQPTTIDIVTKQGLI 90
            PKPNQG   GGTDAPTLSG+G PEV+P+TID+ T QGLI
Sbjct: 61  EPKPNQGQGGGGTDAPTLSGAGFPEVKPSTIDVATNQGLI 100

[Close]

BLAST of CsGy4G025490 vs. ExPASy TrEMBL
Match: A0A5C7HU36 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014941 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.12e-21
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 1  MSNMEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQG 60
          MSN  EQ       + +EK    + L +ESSPY+KY DLE+YKR+ YG +GHL  KPNQG
Sbjct: 1  MSNPSEQMSPSAKTQQQEKTETLEGLLMESSPYLKYSDLEDYKRQAYGTQGHLEVKPNQG 60

Query: 61 GG-TDAPTLSGSGLPEVQPTTIDIVTKQGL 89
          GG TDAPTL+G+GL + Q   +D   +QG+
Sbjct: 61 GGGTDAPTLAGTGLTQGQAEAVDATNRQGI 90

[Close]

BLAST of CsGy4G025490 vs. TAIR 10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 13 MGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLSGS 72
          M K EEK      LPLE+SPY KY+D+E+YK+  YG  GH   KP  GGG TDAPT SG 
Sbjct: 1  MSKSEEKQE----LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGD 59

Query: 73 GLP 75
            P
Sbjct: 61 AAP 59

[Close]

BLAST of CsGy4G025490 vs. TAIR 10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-09
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 15 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLS---- 74
          + E K    D L    +PY+ Y +LE+YK KGYG +GH  PK   GGG TDAPT S    
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLG 70

Query: 75 -GSGLPEVQPTTIDIVTKQGL 90
           G G      ++ D + +QG+
Sbjct: 71 RGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of CsGy4G025490 vs. TAIR 10
Match: AT2G23110.2 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-09
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 15 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLS---- 74
          + E K    D L    +PY+ Y +LE+YK KGYG +GH  PK   GGG TDAPT S    
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLG 70

Query: 75 -GSGLPEVQPTTIDIVTKQGL 90
           G G      ++ D + +QG+
Sbjct: 71 RGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of CsGy4G025490 vs. TAIR 10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 31 SPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGG-TDAPTLSG 71
          SPY+    LE+YK K YG EGH  P P  GGG TDAPT SG
Sbjct: 30 SPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPTPSG 70

The following BLAST results are available for this feature:

BLAST of CsGy4G025490 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G025490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649966.1	1.40e-58	100.00	hypothetical protein Csa_012992 [Cucumis sativus]	[more]
KAA0064662.1	3.99e-53	94.32	late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >...	[more]
XP_023535424.1	1.05e-40	77.17	uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]	[more]
XP_022937316.1	8.65e-40	76.09	uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothet...	[more]
XP_022135734.1	2.13e-37	72.00	uncharacterized protein LOC111007621 [Momordica charantia]	[more]

BLAST of CsGy4G025490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8I8	1.93e-53	94.32	Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa ...	[more]
A0A0A0L5Y6	1.37e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1	[more]
A0A6J1FA12	4.19e-40	76.09	uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC1114436...	[more]
A0A6J1C2A9	1.03e-37	72.00	uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5C7HU36	6.12e-21	51.11	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014941 PE=4 SV=1	[more]

BLAST of CsGy4G025490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33690.1	1.5e-11	55.56	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	7.1e-09	40.74	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.2	7.1e-09	40.74	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	3.3e-06	60.98	Late embryogenesis abundant protein, group 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 19..89 e-value: 2.3E-26 score: 91.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..79
None	No IPR available	PANTHER	PTHR33922:SF15	SUBFAMILY NOT NAMED	coord: 4..91
None	No IPR available	PANTHER	PTHR33922	OS01G0888066 PROTEIN-RELATED	coord: 4..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G025490.2	CsGy4G025490.2	mRNA