CsGy4G025430 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G025430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Localized to the inner membrane of the chloroplast
Location	Gy14Chr4: 30807482 .. 30811620 (-)
RNA-Seq Expression	CsGy4G025430
Synteny	CsGy4G025430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGCATGAATTTGTTAGAAGATAAATGAGGAAGGAAGATTGGATATTAAAGTGGGGGCCGAATGGGCTGAAAATATGGAGTCCAGAGAGAAGAAAGTTATGGGCTTGGGAAATGGGACTTTGGGCCGATAGGTTAGGCTCATGGAAATTACCGCAATGCGCCGAATAATATCCATTAAGGCCATCGAAATTATCGAACAATAAACAATTTCCTTTCCAGGACGACCGTCTTCTCTCCACATTCATTTAACAGATCGCACACATACACATACACACGCGCGTGCGCACACACACACACATACACACACACACTCTCTCTCTCTCTCTCGTTCACCATCTTTGGGACTCAACGATGGCTGCTATATCTAATTCCTTGGTGTTAACGAAAAGCCCTCAACTCCAGTTAACGCATGGTAATTCTTACTCTCTAATCTTTTCAGCGTTTGATCTTATCTTTGATTTTTGTTTTTCCTTTTTACTGTTCAACCTCTACGTTTATTATCGATTCAATTTTAGCTGGTTTTCATTCTTTTTTTTTTTTTTTTCTTTCTAATCTGCCCATCTTATCTAACATTCCTTCCGTTAAATTTCGGGGGTGATCGTTTATGCTGGAGATTTAGGACTCCTGCTCTCGATTTCTTTAAATTGCCTCATTTCCATTAAGAGCTATTGAGTTTCCTTCCAATTTGAATCTTGAATTACACCCAGTTTCAAATGGTAGCTACCTGCTACTTTTGAGTTTTGCCAATTTCTTAGCTCATAAATTAGTATTGGGTTATAACTTATATGCAGAGATGGCGTTGTTCTGTGAGCAATTTGTGAGGGGAATGTGGATTTTAGTCACTGTTTTGCAGCTTATGGTGGGATGTTTGTTCTTTTTTGATAGCTGTCAAAAGGCTTAGTTTTGATTACGTTGTCACTATTATTATTATTACTACTACTACTTTTTTCTTTTACATGAGAGCGTTGGCTGTGCATCTCGACTAATCTTAGGGGATAACATGTGTTTCAAGAAATTCATAGGATATTAATTCTCTCTAAGTTCTTTATTTAAGCCCATGGTTCTTGTTGGCTTCTAGGCGAAAATGGCTATTACATTGTTATGATGTTTTGATTATGTTGTCATGATGATTTACTTTTAATAGAAACAACTGCTTTCATTAACAAAAAATGGAAGGCATACACTTTGTCATGATGATTTGATTTTCAAATCAATTAAAAATTTGCAATTCTTGGAAGATTGAATATGACTACTACATGGTTGCTCTCATTTTTTAACTTTGCAACTGTTAGAGAGTGTACAAATGTACAAACCCTTTAGTTTTATTAGTGTAAAACTCACTCTCGCAAATTATCCTTCCAGGATCAAATCTGAAAACTGTTGATAGACGTTTGGGGAGCTTGTCCCCTACCAGCTTAGTTCTCAGTCCTGGTTGGGTGGGAAACGCAAAGCTTTCTACATCCAGGCGGTCACTTTCAGTTCAAGCTGCATACAGGTATAATCTTTGAAATTGCTACTGAAACAGTATGCCATTAAGTCATCTTGTATGATTGTATAATAGTCTCTGGAGTCTCTTTGAAATGAATTATTATTAATCACTGATGTAACGATGTTAAACCTTTGCATGGTAAGGGTGCATGTCTAAAATCCTTGTGCGTATAAGCTTATCATCGGGGTTTGCAAAAACTGGAAATAGAACTTCCATACAAAACCAAAATGAACGTAGGCAATTGCTAATCAATAGCCGAGAATCTGACCAATTTGAACTGAGCCGGTCCAATTTCACGTGATGGAGCATTTGTTCCTGTTATATTTGGGGGCTAAATGTTTAGAGGCAAGGCTAACATTTTGTGGAATTGTTCAGTCCACGCTCTCCTTTGGTTAATCTGTTAGGAGAGAAACAATAGGATTCTTAAATACAAGGAGACTGCCTCAATCTGAAATTTTTATTTAAAATCTCACACTTGGGTGAAAGATGTCTTTTCTTTTCCTGGATTTTTTTCTTGTTTGGGTAATTATGTAATTACATTCTTTTGATCATAATTAACTATTAGAAGGCTCTAATGGTTTAGGTTTGGGAGGGGGATTTTTCTTCCCCAAGCCCTTAAGTTGTTTCTCTCTTGCTTTGTCTTTAAAGCATCATTCTTGTCCAAACAAATAAATAAGGCTCTGTATGGTTGAAAATAATGTACAGTAACAATTGTTAGTATCCCTTATAGCATTCACCAATGTAAATTACTAATAATATTAGTAGAAGTTTTAAATGGGCATGGCCTGAGTTGATGTGTATTATATTGTATATTATCACAGTGTGGCTGTCCTTTAGATCCATTTAAAATATTCTAATGGCAGTTAAGTTTATTTTGTACATTATGACAGAGATGATGGACGGTCAAGCACAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACACTTGGCTGTGTATATGCCCCTCAGGTATTTTACTTTTGTTCATCTCTTATCTAACCCCTGAATCGTACACCTGGGTTATTTCACCAAGTATACCTGTTACCTGGGTTATTTCACCTAGTATATCTGTTACTTGTGTGCTACGGTCTAAGGGATACTACCTTATGGAAGATACCCATTTAAGTATTCTACCAAGAAAGATGTGTAACAGTTGTGTTCGAGCTTCAAGTTTGAATCCTAAACTTTTTATTGTGACTGAGAGTTGATCTAGTATTTGAATTACAGATTAGCAAGGTGATTGCTGGAACAGACCGGAAAGAATTGATGAAGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGGTGCGAAATCACTTTGTCTCTTCTTATTTGTTGCTAGTTATCTCCTGTGTGGACGCTTGGTCTTCACTTGGCACTAATTTAGTGAATATTGATTTACCAAATGGTAATCGTGAATTTTATTTTATTTTTTGGTAATATCACATATAGACTTCTTAGCCACCCTGAGTTGGCAACGAAATGTAGTTGCTTGTCAGAGATGTCAAAATGTGTTTGTGTAATTTTAGTTTCGGCAATTTTGCTGGGGGTATTTAACTTGGGGAAAGTCTAGAAGATTAGCAGTCGGACAGGGTAAGCAAATATACACCCATCTAGCTTTACACAAAATTAACCTACGAACCAAACACAGACCCTGTCACTTGGTTTATAGAATTAACCTAAATGTTGCTGACCAAATGTATACAACAATATTTTGCTTTTGTTTATGGGATTTGTTTTTGAAATTACCAACTTTATCTTCAGAAGAAATTTAACAATATGTTTTTGGTTTTTGAATGTGCCAACATGACCATGTTTTTTTCTTTAATTCAAATTGCAGAAAACAAGAAAAATGCTGGCACTGAAGATTGAACAGTTAAACTCTGCAATTGATGAGGTTGCTGCTGAGTACCGCTCAGAGAGTCCCACAAATGGACTGGCTATGGACTCTGACGAAGTTGAATCTATCATTTGAAAGAATTGTTGCATTGGTCTTCTTCCTTCGTCGCCCACGACTTCAGGACTCAGAATAATAATTAATTTTGTAGCTATTGTCTTTGATTTTCTCTTTCTTGAACACTTGTATCCAAGCTTTGATGTGTAATATTCATCATCGCATAATGTGTTGCTAGGATCGCTCAAATGCACCATATAAAAGTTGAATAGATTTGTAGAAGAGCATTCTTGCTGTGTTTTCTATTTTGTACACGAACAAGGCATTGTTTTGTATTTGAAAGCCACATATTTCATCCCTCCCGTCTTCTTATTTGCATTTTTTATCATTCGTCTACTTCTCGAGTCACAGCTCGCCAGACAAATGACTCCTTGTCAGTGGATATGACTTTCACAAAACTTTTGACAGTTTGAACTAAAAAAGTGCGCTCAAATCTAAAATCAGTTTTAACGATCTCTGACAATAAACATTTTTTTCTTTGTTCCTTCTCACTTTTGCTCCCACTTTTTCTTCTCAGTACTTGCACCTCATTACCTTCTAGCTTTATCTTTTTTTCCAGCGACAACTACTGGTCAAGCTTTTTTGCGATAGGAACCAAAAGTGAGAGGACCCAAGGAGCAAGACAAAAAAATGTTGAACGAGAAAACATATGGAGCAACAACACAAGAGAT

mRNA sequence

ACGGCATGAATTTGTTAGAAGATAAATGAGGAAGGAAGATTGGATATTAAAGTGGGGGCCGAATGGGCTGAAAATATGGAGTCCAGAGAGAAGAAAGTTATGGGCTTGGGAAATGGGACTTTGGGCCGATAGGTTAGGCTCATGGAAATTACCGCAATGCGCCGAATAATATCCATTAAGGCCATCGAAATTATCGAACAATAAACAATTTCCTTTCCAGGACGACCGTCTTCTCTCCACATTCATTTAACAGATCGCACACATACACATACACACGCGCGTGCGCACACACACACACATACACACACACACTCTCTCTCTCTCTCTCGTTCACCATCTTTGGGACTCAACGATGGCTGCTATATCTAATTCCTTGGTGTTAACGAAAAGCCCTCAACTCCAGTTAACGCATGGATCAAATCTGAAAACTGTTGATAGACGTTTGGGGAGCTTGTCCCCTACCAGCTTAGTTCTCAGTCCTGGTTGGGTGGGAAACGCAAAGCTTTCTACATCCAGGCGGTCACTTTCAGTTCAAGCTGCATACAGAGATGATGGACGGTCAAGCACAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACACTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGTGATTGCTGGAACAGACCGGAAAGAATTGATGAAGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAATGCTGGCACTGAAGATTGAACAGTTAAACTCTGCAATTGATGAGGTTGCTGCTGAGTACCGCTCAGAGAGTCCCACAAATGGACTGGCTATGGACTCTGACGAAGTTGAATCTATCATTTGAAAGAATTGTTGCATTGGTCTTCTTCCTTCGTCGCCCACGACTTCAGGACTCAGAATAATAATTAATTTTGTAGCTATTGTCTTTGATTTTCTCTTTCTTGAACACTTGTATCCAAGCTTTGATGTGTAATATTCATCATCGCATAATGTGTTGCTAGGATCGCTCAAATGCACCATATAAAAGTTGAATAGATTTGTAGAAGAGCATTCTTGCTGTGTTTTCTATTTTGTACACGAACAAGGCATTGTTTTGTATTTGAAAGCCACATATTTCATCCCTCCCGTCTTCTTATTTGCATTTTTTATCATTCGTCTACTTCTCGAGTCACAGCTCGCCAGACAAATGACTCCTTGTCAGTGGATATGACTTTCACAAAACTTTTGACAGTTTGAACTAAAAAAGTGCGCTCAAATCTAAAATCAGTTTTAACGATCTCTGACAATAAACATTTTTTTCTTTGTTCCTTCTCACTTTTGCTCCCACTTTTTCTTCTCAGTACTTGCACCTCATTACCTTCTAGCTTTATCTTTTTTTCCAGCGACAACTACTGGTCAAGCTTTTTTGCGATAGGAACCAAAAGTGAGAGGACCCAAGGAGCAAGACAAAAAAATGTTGAACGAGAAAACATATGGAGCAACAACACAAGAGAT

Coding sequence (CDS)

ATGGCTGCTATATCTAATTCCTTGGTGTTAACGAAAAGCCCTCAACTCCAGTTAACGCATGGATCAAATCTGAAAACTGTTGATAGACGTTTGGGGAGCTTGTCCCCTACCAGCTTAGTTCTCAGTCCTGGTTGGGTGGGAAACGCAAAGCTTTCTACATCCAGGCGGTCACTTTCAGTTCAAGCTGCATACAGAGATGATGGACGGTCAAGCACAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACACTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGTGATTGCTGGAACAGACCGGAAAGAATTGATGAAGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACAAGAAAAATGCTGGCACTGAAGATTGAACAGTTAAACTCTGCAATTGATGAGGTTGCTGCTGAGTACCGCTCAGAGAGTCCCACAAATGGACTGGCTATGGACTCTGACGAAGTTGAATCTATCATTTGA

Protein sequence

MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSVQAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII*

Homology

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BLAST of CsGy4G025430 vs. NCBI nr
Match: XP_004145557.1 (uncharacterized protein LOC101206784 [Cucumis sativus] >KGN55524.1 hypothetical protein Csa_012730 [Cucumis sativus])

HSP 1 Score: 318 bits (814), Expect = 5.45e-109
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV
Sbjct: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60

Query: 61  QAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDE 120
           QAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDE
Sbjct: 61  QAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDE 120

Query: 121 EKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII
Sbjct: 121 EKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169

[Close]

BLAST of CsGy4G025430 vs. NCBI nr
Match: XP_008453013.1 (PREDICTED: uncharacterized protein LOC103493844 [Cucumis melo])

HSP 1 Score: 268 bits (684), Expect = 3.68e-89
Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           M AISNSLVLTK+PQLQLTHGSNLKTVD+RLGSLSPTSLVLSPGWVG AKLST RR LSV
Sbjct: 1   MTAISNSLVLTKNPQLQLTHGSNLKTVDKRLGSLSPTSLVLSPGWVGKAKLSTFRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIFIGGFVLGG+IVGTLGCVYAPQISK IAG DRK+LM+KLPKFIYD
Sbjct: 61  QAAYSDGGRSSNAGIFIGGFVLGGIIVGTLGCVYAPQISKAIAGADRKDLMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+A+ R E P NG+A++SDEVES I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSAQLRPEDPPNGVAVNSDEVESAI 170

[Close]

BLAST of CsGy4G025430 vs. NCBI nr
Match: XP_022936063.1 (uncharacterized protein LOC111442778 [Cucurbita moschata])

HSP 1 Score: 255 bits (652), Expect = 2.76e-84
Identity = 134/170 (78.82%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLV TK+PQLQL+ GSNLKT D+ LGS+SPTSL+L+PGWVG AKLSTSRR LSV
Sbjct: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIF+GGFVLGGLIVGTLGCVYAPQISK +AGTDRKELM+KLPKFIYD
Sbjct: 61  QAAYSDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+++ R++ P NG+A++SDE+E  I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of CsGy4G025430 vs. NCBI nr
Match: XP_022975295.1 (uncharacterized protein LOC111474436 [Cucurbita maxima])

HSP 1 Score: 253 bits (647), Expect = 1.59e-83
Identity = 133/170 (78.24%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLV TK+PQL L+ GSNLKT D+ LGS+SPTSL+L+PGWVG AKLSTSRR LSV
Sbjct: 1   MAAISNSLVSTKNPQLPLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIF+GGFVLGGLIVGTLGCVYAPQISK +AGTDRKELM+KLPKFIYD
Sbjct: 61  QAAYSDSGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+++ R++ P NG+A++SDE+E  I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of CsGy4G025430 vs. NCBI nr
Match: XP_023535792.1 (uncharacterized protein LOC111797119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252 bits (644), Expect = 4.57e-83
Identity = 133/170 (78.24%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLV TK+PQLQL+  SNLKT D+ LGS+SPTSL+L+PGWVG AKLSTSRR LSV
Sbjct: 1   MAAISNSLVSTKNPQLQLSSRSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIF+GGFVLGGLIVGTLGCVYAPQISK +AGTDRKELM+KLPKFIYD
Sbjct: 61  QAAYSDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+++ R++ P NG+A++SDE+E  I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of CsGy4G025430 vs. ExPASy TrEMBL
Match: A0A0A0L3E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664320 PE=4 SV=1)

HSP 1 Score: 318 bits (814), Expect = 2.64e-109
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV
Sbjct: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60

Query: 61  QAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDE 120
           QAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDE
Sbjct: 61  QAAYRDDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYDE 120

Query: 121 EKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII
Sbjct: 121 EKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169

[Close]

BLAST of CsGy4G025430 vs. ExPASy TrEMBL
Match: A0A1S3BV81 (uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 1.78e-89
Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           M AISNSLVLTK+PQLQLTHGSNLKTVD+RLGSLSPTSLVLSPGWVG AKLST RR LSV
Sbjct: 1   MTAISNSLVLTKNPQLQLTHGSNLKTVDKRLGSLSPTSLVLSPGWVGKAKLSTFRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIFIGGFVLGG+IVGTLGCVYAPQISK IAG DRK+LM+KLPKFIYD
Sbjct: 61  QAAYSDGGRSSNAGIFIGGFVLGGIIVGTLGCVYAPQISKAIAGADRKDLMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+A+ R E P NG+A++SDEVES I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSAQLRPEDPPNGVAVNSDEVESAI 170

[Close]

BLAST of CsGy4G025430 vs. ExPASy TrEMBL
Match: A0A6J1FC82 (uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC111442778 PE=4 SV=1)

HSP 1 Score: 255 bits (652), Expect = 1.34e-84
Identity = 134/170 (78.82%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLV TK+PQLQL+ GSNLKT D+ LGS+SPTSL+L+PGWVG AKLSTSRR LSV
Sbjct: 1   MAAISNSLVSTKNPQLQLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIF+GGFVLGGLIVGTLGCVYAPQISK +AGTDRKELM+KLPKFIYD
Sbjct: 61  QAAYSDGGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+++ R++ P NG+A++SDE+E  I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of CsGy4G025430 vs. ExPASy TrEMBL
Match: A0A6J1IGB6 (uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 7.72e-84
Identity = 133/170 (78.24%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           MAAISNSLV TK+PQL L+ GSNLKT D+ LGS+SPTSL+L+PGWVG AKLSTSRR LSV
Sbjct: 1   MAAISNSLVSTKNPQLPLSSGSNLKTADKLLGSVSPTSLLLNPGWVGKAKLSTSRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS  GIF+GGFVLGGLIVGTLGCVYAPQISK +AGTDRKELM+KLPKFIYD
Sbjct: 61  QAAYSDSGRSSNAGIFVGGFVLGGLIVGTLGCVYAPQISKALAGTDRKELMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+++ R++ P NG+A++SDE+E  I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTDDPPNGVAVNSDEIEPAI 170

[Close]

BLAST of CsGy4G025430 vs. ExPASy TrEMBL
Match: A0A6J1FTW3 (uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC111446794 PE=4 SV=1)

HSP 1 Score: 251 bits (640), Expect = 8.99e-83
Identity = 132/170 (77.65%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MAAISNSLVLTKSPQLQLTHGSNLKTVDRRLGSLSPTSLVLSPGWVGNAKLSTSRRSLSV 60
           M+AISNSL+LTK+PQLQL+ GSNLKT D+R GS+SPT L+L+PGWVG AKLST RR LSV
Sbjct: 1   MSAISNSLILTKTPQLQLSAGSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSV 60

Query: 61  QAAYRDDGRSST-GIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKKLPKFIYD 120
           QAAY D GRSS+ GIFIGGFVLGGLIVGTLGCVYAPQISK +AGTDRK+LM+KLPKFIYD
Sbjct: 61  QAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYD 120

Query: 121 EEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVESII 169
           EEKALEKTRK+LA KIEQLNSAIDEV+++ R+E   NG+A++SDEVE  I
Sbjct: 121 EEKALEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI 170

[Close]

BLAST of CsGy4G025430 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. )

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-40
Identity = 80/115 (69.57%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 54  SRRSLSVQAAYR-DDGRSSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELMKK 113
           ++R L++Q+AYR DDG  STG+F+GGF+LGGLIVG LGCVYAPQISK IAG DRK+LM+K
Sbjct: 52  TKRILTIQSAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGADRKDLMRK 111

Query: 114 LPKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYRSESPTNGLAMDSDEVES 168
           LPKFIYDEEKALEKTRK+LA KI QLNSAID+V+++ +SE   NG A+ +DE+E+
Sbjct: 112 LPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTPNGAALSTDEIEA 166

[Close]

BLAST of CsGy4G025430 vs. TAIR 10
Match: AT5G16660.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 50  KLSTSRRSLSVQAAYRDDGRS-STGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKE 109
           K S   R  SV A YRD  RS S+G FI GF+LGG + G +  ++APQI + +   + + 
Sbjct: 45  KKSNRTRKFSVSAGYRDGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEY 104

Query: 110 LMKKLPKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYRS-ESPTNGL 159
             +K  +  Y +E  LEKTR+ L  KI QLNSAID V++  R  E  T+ L
Sbjct: 105 GFEKPKQPTYYDE-GLEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSL 154

[Close]

BLAST of CsGy4G025430 vs. TAIR 10
Match: AT5G16660.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 50  KLSTSRRSLSVQAAYRDDGRS-STGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKE 109
           K S   R  SV A   D  RS S+G FI GF+LGG + G +  ++APQI + +   + + 
Sbjct: 45  KKSNRTRKFSVSAG--DGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEY 104

Query: 110 LMKKLPKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYRS-ESPTNGL 159
             +K  +  Y +E  LEKTR+ L  KI QLNSAID V++  R  E  T+ L
Sbjct: 105 GFEKPKQPTYYDE-GLEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSL 152

[Close]

BLAST of CsGy4G025430 vs. TAIR 10
Match: AT3G02900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 52  STSRRSLSVQAAYRDDGR-SSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELM 111
           S     LSV A YR   +   +  F+ GF+LG  + GTL  ++APQI + +   +     
Sbjct: 38  SNRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFK 97

Query: 112 KKLPKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYR 151
           K      YDE   LE+ R++L  KI QLNSAID+V++  +
Sbjct: 98  KPEQPMYYDE--GLEERREILNEKIGQLNSAIDKVSSRLK 135

[Close]

BLAST of CsGy4G025430 vs. TAIR 10
Match: AT3G02900.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1). )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 52  STSRRSLSVQAAYRDDGR-SSTGIFIGGFVLGGLIVGTLGCVYAPQISKVIAGTDRKELM 111
           S     LSV A YR   +   +  F+ GF+LG  + GTL  ++APQI + +   +     
Sbjct: 37  SNRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFK 96

Query: 112 KKLPKFIYDEEKALEKTRKMLALKIEQLNSAIDEVAAEYR 151
           K      YDE   LE+ R++L  KI QLNSAID+V++  +
Sbjct: 97  KPEQPMYYDE--GLEERREILNEKIGQLNSAIDKVSSRLK 134

The following BLAST results are available for this feature:

BLAST of CsGy4G025430 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G025430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145557.1	5.45e-109	100.00	uncharacterized protein LOC101206784 [Cucumis sativus] >KGN55524.1 hypothetical ...	[more]
XP_008453013.1	3.68e-89	84.12	PREDICTED: uncharacterized protein LOC103493844 [Cucumis melo]	[more]
XP_022936063.1	2.76e-84	78.82	uncharacterized protein LOC111442778 [Cucurbita moschata]	[more]
XP_022975295.1	1.59e-83	78.24	uncharacterized protein LOC111474436 [Cucurbita maxima]	[more]
XP_023535792.1	4.57e-83	78.24	uncharacterized protein LOC111797119 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G025430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3E6	2.64e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664320 PE=4 SV=1	[more]
A0A1S3BV81	1.78e-89	84.12	uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=...	[more]
A0A6J1FC82	1.34e-84	78.82	uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC1114427...	[more]
A0A6J1IGB6	7.72e-84	78.24	uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436...	[more]
A0A6J1FTW3	8.99e-83	77.65	uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC1114467...	[more]

BLAST of CsGy4G025430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42960.1	6.5e-40	69.57	expressed protein localized to the inner membrane of the chloroplast.	[more]
AT5G16660.1	1.5e-12	43.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G16660.2	1.2e-09	41.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02900.1	1.0e-08	37.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02900.2	1.0e-08	37.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..148
None	No IPR available	PANTHER	PTHR34048	LOW-DENSITY RECEPTOR-LIKE PROTEIN	coord: 1..169
None	No IPR available	PANTHER	PTHR34048:SF9	SUBFAMILY NOT NAMED	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G025430.2	CsGy4G025430.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane