CsGy4G025290 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE* Homology
BLAST of CsGy4G025290 vs. ExPASy Swiss-Prot
Match: Q9FIJ4 (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 5.2e-60 Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 0
BLAST of CsGy4G025290 vs. ExPASy Swiss-Prot
Match: Q9FVV7 (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30 Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0
BLAST of CsGy4G025290 vs. NCBI nr
Match: XP_004145544.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1 DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_011927 [Cucumis sativus]) HSP 1 Score: 418 bits (1075), Expect = 1.83e-147 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
BLAST of CsGy4G025290 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >KAA0064645.1 uncharacterized protein E6C27_scaffold255G003690 [Cucumis melo var. makuwa] >TYK19947.1 uncharacterized protein E5676_scaffold134G00600 [Cucumis melo var. makuwa]) HSP 1 Score: 401 bits (1030), Expect = 1.33e-140 Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0
BLAST of CsGy4G025290 vs. NCBI nr
Match: XP_038897318.1 (DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 392 bits (1006), Expect = 6.06e-137 Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0
BLAST of CsGy4G025290 vs. NCBI nr
Match: XP_022940851.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940852.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940853.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >KAG6608636.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037953.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 363 bits (931), Expect = 1.53e-125 Identity = 186/209 (89.00%), Postives = 190/209 (90.91%), Query Frame = 0
BLAST of CsGy4G025290 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 360 bits (923), Expect = 2.53e-124 Identity = 185/209 (88.52%), Postives = 189/209 (90.43%), Query Frame = 0
BLAST of CsGy4G025290 vs. ExPASy TrEMBL
Match: A0A0A0L5X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1) HSP 1 Score: 418 bits (1075), Expect = 8.85e-148 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
BLAST of CsGy4G025290 vs. ExPASy TrEMBL
Match: A0A1S4DZ99 (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1) HSP 1 Score: 401 bits (1030), Expect = 6.43e-141 Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0
BLAST of CsGy4G025290 vs. ExPASy TrEMBL
Match: A0A5A7VFI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00600 PE=4 SV=1) HSP 1 Score: 401 bits (1030), Expect = 6.43e-141 Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0
BLAST of CsGy4G025290 vs. ExPASy TrEMBL
Match: A0A6J1FJJ9 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446320 PE=4 SV=1) HSP 1 Score: 363 bits (931), Expect = 7.39e-126 Identity = 186/209 (89.00%), Postives = 190/209 (90.91%), Query Frame = 0
BLAST of CsGy4G025290 vs. ExPASy TrEMBL
Match: A0A6J1J3T8 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481079 PE=4 SV=1) HSP 1 Score: 355 bits (912), Expect = 5.81e-123 Identity = 182/209 (87.08%), Postives = 188/209 (89.95%), Query Frame = 0
BLAST of CsGy4G025290 vs. TAIR 10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 232.3 bits (591), Expect = 3.7e-61 Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 0
BLAST of CsGy4G025290 vs. TAIR 10
Match: AT1G71310.2 (cobalt ion binding ) HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31 Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0
BLAST of CsGy4G025290 vs. TAIR 10
Match: AT1G71310.1 (cobalt ion binding ) HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31 Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0
BLAST of CsGy4G025290 vs. TAIR 10
Match: AT1G71310.3 (cobalt ion binding ) HSP 1 Score: 82.0 bits (201), Expect = 6.1e-16 Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|