CsGy4G024240 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G024240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Negative regulator of systemic acquired resistance, putative isoform 1
Location	Gy14Chr4: 30031766 .. 30032508 (-)
RNA-Seq Expression	CsGy4G024240
Synteny	CsGy4G024240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTTGGAAAGCATAAAGGAGGATCCCATAACCATCTATCATATTGGTAGGGATTGCAATCATCTTTGGTACTTCTCTGTTTCACCTTTTGAGGTATTCTTGTATTTCATGCTTAGCAATGTTTGATACTTTTGTTGATTGAACACTCGATTCTTTTATCTTCTTTGTAATGAAGTTTAGCTTTGGCGTGTGAATGGCTTGAGTTTAGAGTTTTCTTTTTCTCTTTATTTCCCGGATTGATATAGATTGGGTCTTCACAAGCAAAATATTGAAAAGAAAATACCCCAACGAAACTTAGTATTCATCACAAAATTTTATTCGGCTATACACCATAAGAAGTAAGAGCAGGTGCTATGATCGTGAAGGAGAGACTCTGTTTAGCTGTTTGCTTGATTGAATGATCTTTTGGCTGCACCGCGTGCATCTACTGATATAGTTTACTAAGAACTTGTCAGCAAGTTTTTTTTCTATTTGAAAGAAATTTTAGATTTACCGTAACTTTGAAGTATTAAATTGATGTGCTTATAGAATCCATCTTTCATGTAGCACTATTCAGCCTTCAATTAAATTTCTGTGGTTCGCAGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCCGAGCGTTGGATACCAAGGTTTTCTCCTTATTTATGTTTACTTTGTCTTTGAAAAGAGTTGGTGCAAGCACAACTGTGAATTCACTAGAGGACCTGTAA

mRNA sequence

ATGGAGAGTTTGGAAAGCATAAAGGAGGATCCCATAACCATCTATCATATTGGTAGGGATTGCAATCATCTTTGGTACTTCTCTGTTTCACCTTTTGAGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCCGAGCGTTGGATACCAAGGTTTTCTCCTTATTTATGTTTACTTTGTCTTTGAAAAGAGTTGGTGCAAGCACAACTGTGAATTCACTAGAGGACCTGTAA

Coding sequence (CDS)

ATGGAGAGTTTGGAAAGCATAAAGGAGGATCCCATAACCATCTATCATATTGGTAGGGATTGCAATCATCTTTGGTACTTCTCTGTTTCACCTTTTGAGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCCGAGCGTTGGATACCAAGGTTTTCTCCTTATTTATGTTTACTTTGTCTTTGAAAAGAGTTGGTGCAAGCACAACTGTGAATTCACTAGAGGACCTGTAA

Protein sequence

MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTKVFSLFMFTLSLKRVGASTTVNSLEDL*

Homology

[Close]

BLAST of CsGy4G024240 vs. NCBI nr
Match: KAE8649927.1 (hypothetical protein Csa_011924 [Cucumis sativus])

HSP 1 Score: 122 bits (307), Expect = 1.60e-33
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTK 57
          MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTK
Sbjct: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTK 57

[Close]

BLAST of CsGy4G024240 vs. NCBI nr
Match: XP_011653380.1 (negative regulator of systemic acquired resistance SNI1 isoform X2 [Cucumis sativus] >KAE8652727.1 hypothetical protein Csa_013169 [Cucumis sativus])

HSP 1 Score: 52.0 bits (123), Expect = 2.47e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 143 QGFHQLLQGLAEVSDVENFQALDTKVLS 170

[Close]

BLAST of CsGy4G024240 vs. NCBI nr
Match: XP_008442931.1 (PREDICTED: uncharacterized protein LOC103486681 isoform X2 [Cucumis melo])

HSP 1 Score: 52.0 bits (123), Expect = 2.47e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 143 QGFHQLLQGLAEVSDVENFQALDTKVLS 170

[Close]

BLAST of CsGy4G024240 vs. NCBI nr
Match: KAA0057020.1 (Negative regulator of systemic acquired resistance, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 2.53e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 84  QGFHQLLQGLAEVSDVENFQALDTKVLS 111

[Close]

BLAST of CsGy4G024240 vs. NCBI nr
Match: XP_008442923.1 (PREDICTED: uncharacterized protein LOC103486681 isoform X1 [Cucumis melo])

HSP 1 Score: 52.0 bits (123), Expect = 2.55e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 143 QGFHQLLQGLAEVSDVENFQALDTKVLS 170

[Close]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL
Match: A0A0A0L466 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G650160 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 2.87e-35
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTKVFS 60
          MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTK  S
Sbjct: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENFRALDTKAAS 60

[Close]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL
Match: A0A1S3B6E1 (uncharacterized protein LOC103486681 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486681 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.19e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 143 QGFHQLLQGLAEVSDVENFQALDTKVLS 170

[Close]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL
Match: A0A5A7UPI7 (Negative regulator of systemic acquired resistance, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002040 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.23e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 84  QGFHQLLQGLAEVSDVENFQALDTKVLS 111

[Close]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL
Match: A0A0A0LUN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G076610 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.23e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 143 QGFHQLLQGLAEVSDVENFQALDTKVLS 170

[Close]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL
Match: A0A1S3B7L2 (uncharacterized protein LOC103486681 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486681 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.23e-05
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 33  EGFHQLLQGVAEVSDVENFRALDTKVFS 60
           +GFHQLLQG+AEVSDVENF+ALDTKV S
Sbjct: 143 QGFHQLLQGLAEVSDVENFQALDTKVLS 170

The following BLAST results are available for this feature:

BLAST of CsGy4G024240 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G024240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649927.1	1.60e-33	100.00	hypothetical protein Csa_011924 [Cucumis sativus]	[more]
XP_011653380.1	2.47e-05	85.71	negative regulator of systemic acquired resistance SNI1 isoform X2 [Cucumis sati...	[more]
XP_008442931.1	2.47e-05	85.71	PREDICTED: uncharacterized protein LOC103486681 isoform X2 [Cucumis melo]	[more]
KAA0057020.1	2.53e-05	85.71	Negative regulator of systemic acquired resistance, putative isoform 1 [Cucumis ...	[more]
XP_008442923.1	2.55e-05	85.71	PREDICTED: uncharacterized protein LOC103486681 isoform X1 [Cucumis melo]	[more]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L466	2.87e-35	96.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G650160 PE=4 SV=1	[more]
A0A1S3B6E1	1.19e-05	85.71	uncharacterized protein LOC103486681 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UPI7	1.23e-05	85.71	Negative regulator of systemic acquired resistance, putative isoform 1 OS=Cucumi...	[more]
A0A0A0LUN6	1.23e-05	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G076610 PE=4 SV=1	[more]
A0A1S3B7L2	1.23e-05	85.71	uncharacterized protein LOC103486681 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CsGy4G024240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G024240.2	CsGy4G024240.2	mRNA