CsGy4G023795 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G023795
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	leucine-rich repeat extensin-like protein 2
Location	Gy14Chr4: 29734655 .. 29736507 (-)
RNA-Seq Expression	CsGy4G023795
Synteny	CsGy4G023795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCATTCCAAGACGATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAATGATGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGTTTGTTCTTAAGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAGTTGTTGATGGGTTTGTTGAATTGTCTACTCGTATTGTAATGATAAGAAAAGATAAACTCTACTATCAAGTATGGATAGATCATTTGAGGAATATGCATGAGAGAAAGTTGTATAAATATTTCAAATTTTGTATTAGTGGTTCATTGAGTAATTGAAATCAACCAAGTTTTGAAATATCTGGTTGAAAAAGTTTTCATACTTAACTTAAGTTTGAGTTTTAACAAATAAACAACCCAAACTTAGCTCAACTAACATTTATATTGAAAATATATAGATTTAATATCTTTTTCATGTGTATTAAATAAAAAAAAAGTATCCTTTTAAATGAACATACAAAAAAATATAATCTTTTACATCTAAATATGGTAAGGTCGAAAAAAAAAAGTAAATTAAGCTCATATCAATATTCATATAAGTTATTATTAACCATTATTAAATTAAAAACTAGAAGGATTGTGAAATTAATTATGAAAATTACAAAGACAGAAAATTGAAACTCTGGTCTCGATAAAGAGTATTATGTTCATAAACGCTTTTACTTAAATCAAGCTATATAGCTAATATGATATTTCACATGGTAAATTGCAATTGATCGGTTTTCTTAAAAAATAGAAGTATATAAATAATAACAGCTAAGTTGTACCAATTATTATATGTACCATCAAGTATACTATACTCCAAGTTTAATCAAATCAAACCTAAAAAAGTTTATATTATTGTTATCACTTAAAAATTTTGTCATTTGTACCGTAGGATAAATTGTGTTGTATCTCCCAATATAACTATAAACAAAAACAATATAACTATAAACAAAAAGAAAAAAGAAACTATACCTGTTTTTAATAATAAATTGTAAATTTGTGTGAAAATTCGAAGGATGATTTATGAACCTTAAGCAAATTTAACATATTATCGGACTTTATATTAACAAATTAGTCTAAACAAACGTACAACAAAAAAAAAAAAAGTTTAAAAATAGTGACAAATATAACTATTACATTTGAAAAGATTAAATATTTAATAGCATTGTAAAAAAATTCCAAATATATACAAATATAAGTATTAATTTTAGATAAAAATCTGCATTTACTTTTGTAAATGTAGCACAAGAATGATTTGTATAGACCAGAATACCCCTATAATTACAAAGAAAATTTGGGAAAAGTATGCCTTTCTCTCTCTCTCAGTCGTGCAAAAAACTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGGTTTCGTTAACGAGCAGGGACGGAGCTCATCGGCTCACCGGTAG

mRNA sequence

ATGTGTCATTCCAAGACGATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGTCGTGCAAAAAACTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGGTTTCGTTAACGAGCAGGGACGGAGCTCATCGGCTCACCGGTAG

Coding sequence (CDS)

ATGTGTCATTCCAAGACGATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGTCGTGCAAAAAACTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGGTTTCGTTAACGAGCAGGGACGGAGCTCATCGGCTCACCGGTAG

Protein sequence

MCHSKTMPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR*

Homology

[Close]

BLAST of CsGy4G023795 vs. NCBI nr
Match: KAE8649911.1 (hypothetical protein Csa_012510 [Cucumis sativus])

HSP 1 Score: 328 bits (842), Expect = 1.40e-113
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 7   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 66
           MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY
Sbjct: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60

Query: 67  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 126
           IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF
Sbjct: 61  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120

Query: 127 YSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR 162
           YSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR
Sbjct: 121 YSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR 156

[Close]

BLAST of CsGy4G023795 vs. NCBI nr
Match: XP_022940707.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 172 bits (435), Expect = 1.62e-51
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 7   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-- 66
           MPF G  R   S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    
Sbjct: 1   MPFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60

Query: 67  SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPY 126
           +YIPPPPP FYGG+   PPA T SY+L GP PPVANY  GA+PSG+MPQTVGPRDYSYPY
Sbjct: 61  TYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120

Query: 127 YYFYSSN 130
           YYFYSSN
Sbjct: 121 YYFYSSN 127

[Close]

BLAST of CsGy4G023795 vs. NCBI nr
Match: XP_022981722.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita maxima])

HSP 1 Score: 160 bits (406), Expect = 3.49e-47
Identity = 85/134 (63.43%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 7   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP---P 66
           MPF G  R   S GL ++A  LF   S AQ+ VPST QLCIS C TCPV+CT P P   P
Sbjct: 1   MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTP 60

Query: 67  LSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGP 126
            SY       PPPPP FYGG+   PPA T SY+  GPPPPVANY  GA+PSG+MPQTVGP
Sbjct: 61  RSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGP 120

Query: 127 RDYSYPYYYFYSSN 130
           RDYSYPYYYFYSSN
Sbjct: 121 RDYSYPYYYFYSSN 134

[Close]

BLAST of CsGy4G023795 vs. NCBI nr
Match: KAG6608366.1 (Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 1.04e-46
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 7   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-- 66
           MPF G      S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    
Sbjct: 1   MPFQGKMPFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60

Query: 67  SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPY 126
           +YIPPPPP FYGG+   PPA T SY+L GPPPPVANY  GA+PSG+MPQTVGPRDYSYPY
Sbjct: 61  TYIPPPPPAFYGGYMGPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120

Query: 127 YYFYSSN 130
           YYFYSSN
Sbjct: 121 YYFYSSN 127

[Close]

BLAST of CsGy4G023795 vs. NCBI nr
Match: XP_023523402.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150 bits (378), Expect = 3.14e-43
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 24  VAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPN--FYGGFN 83
           +A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    +YIPPPPP   FYGG+ 
Sbjct: 1   MAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYNTYIPPPPPPPAFYGGYM 60

Query: 84  MAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN 130
             PPA T SY+L GPPPPVANY  GA+PSG+MPQTVGPRDYSYPYYYFYSSN
Sbjct: 61  GPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPYYYFYSSN 112

[Close]

BLAST of CsGy4G023795 vs. ExPASy TrEMBL
Match: A0A0A0L054 (Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240 PE=4 SV=1)

HSP 1 Score: 283 bits (723), Expect = 2.48e-95
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MCHSKTMPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP 60
           MCHSKTMPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP
Sbjct: 33  MCHSKTMPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP 92

Query: 61  PPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS 120
           PPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS
Sbjct: 93  PPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS 152

Query: 121 YPYYYFYSSNS 131
           YPYYYFYSSNS
Sbjct: 153 YPYYYFYSSNS 163

[Close]

BLAST of CsGy4G023795 vs. ExPASy TrEMBL
Match: A0A6J1FKD3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111446222 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 7.82e-52
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 7   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-- 66
           MPF G  R   S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    
Sbjct: 1   MPFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60

Query: 67  SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPY 126
           +YIPPPPP FYGG+   PPA T SY+L GP PPVANY  GA+PSG+MPQTVGPRDYSYPY
Sbjct: 61  TYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120

Query: 127 YYFYSSN 130
           YYFYSSN
Sbjct: 121 YYFYSSN 127

[Close]

BLAST of CsGy4G023795 vs. ExPASy TrEMBL
Match: A0A6J1IUS7 (leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111480787 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 1.69e-47
Identity = 85/134 (63.43%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 7   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP---P 66
           MPF G  R   S GL ++A  LF   S AQ+ VPST QLCIS C TCPV+CT P P   P
Sbjct: 1   MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTP 60

Query: 67  LSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGP 126
            SY       PPPPP FYGG+   PPA T SY+  GPPPPVANY  GA+PSG+MPQTVGP
Sbjct: 61  RSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGP 120

Query: 127 RDYSYPYYYFYSSN 130
           RDYSYPYYYFYSSN
Sbjct: 121 RDYSYPYYYFYSSN 134

[Close]

BLAST of CsGy4G023795 vs. ExPASy TrEMBL
Match: A0A2N9HA71 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.13e-23
Identity = 60/138 (43.48%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 21  LWIVAFT-LFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP----------------- 80
           +WI+    L + +S+ Q+  PS+G LCISDC+TCPVIC+ PPP                 
Sbjct: 20  IWIMGLLMLVNVTSEDQIGSPSSGSLCISDCATCPVICSPPPPLQESYSPPSPPVQHHSP 79

Query: 81  PLSYI--PPPPPNFYGGFN---MAPPATPSYYLWGPPPPVANYFLGARPSGE----MPQT 131
           P SY   PPPPP+          +PP   SY  WG PPP   YF    PSG     MP  
Sbjct: 80  PKSYYANPPPPPSPPSSLTPPPASPPKASSYSSWGTPPPPFMYFNNMPPSGNINNRMPPM 139

[Close]

BLAST of CsGy4G023795 vs. ExPASy TrEMBL
Match: A0A5B7BE41 (Putative extensin (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036641 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.25e-21
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 23  IVAFTLFSASSKA-QMAVPSTGQLCISDCSTCPVICTAPPPPL-SYIPPPPP-------- 82
           ++   +F+  + A Q ++P+ G LCISDC+TCPVIC+ PPPP+ S +PPP P        
Sbjct: 29  VMGLIMFARVTSADQTSIPAAGLLCISDCATCPVICSPPPPPVESKLPPPSPPPVHHSPP 88

Query: 83  --NFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN 130
             ++Y      PP  PSY  WG  PP  + ++   PS +MP  +  R+YSYPYYYFY+SN
Sbjct: 89  QYSYYFQSPPPPPPPPSYMSWGATPPPPSGYMNI-PSAQMPPGMEQRNYSYPYYYFYASN 147

[Close]

BLAST of CsGy4G023795 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-06
Identity = 44/149 (29.53%), Postives = 63/149 (42.28%), Query Frame = 0


Query: 21  LWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP--------------PLSY 80
           L +V     S S +  +  P    LCIS+CSTCP IC+ PP               PLS 
Sbjct: 10  LVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPSPSMSPPPSPSLPLSS 69

Query: 81  IPPPPPNFYGG-------------FNMAPPATPSYYLW---GPPPPVANYFLGARPS--- 132
            PPPPP                    +  P  P +Y +    PPPP++    G+ PS   
Sbjct: 70  SPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSVPS 129

The following BLAST results are available for this feature:

BLAST of CsGy4G023795 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G023795 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649911.1	1.40e-113	100.00	hypothetical protein Csa_012510 [Cucumis sativus]	[more]
XP_022940707.1	1.62e-51	67.72	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]
XP_022981722.1	3.49e-47	63.43	leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]	[more]
KAG6608366.1	1.04e-46	67.72	Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma su...	[more]
XP_023523402.1	3.14e-43	69.64	leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G023795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L054	2.48e-95	100.00	Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240...	[more]
A0A6J1FKD3	7.82e-52	67.72	leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IUS7	1.69e-47	63.43	leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A2N9HA71	5.13e-23	43.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1	[more]
A0A5B7BE41	1.25e-21	43.33	Putative extensin (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036641 PE=4 ...	[more]

BLAST of CsGy4G023795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11990.1	7.6e-06	29.53	proline-rich family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G023795.1	CsGy4G023795.1	mRNA