CsGy4G023300 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G023300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pre-mRNA-processing protein 40A-like
Location	Gy14Chr4: 29401504 .. 29403561 (-)
RNA-Seq Expression	CsGy4G023300
Synteny	CsGy4G023300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAAAACCCATTCAAGAGGTAGAGTGGCTTTCTCGTGGGAAAATAAGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCCCACGGCTTCTGTGACGGCGACGATCCGTTGAAGAAGCAGCTGCAGCCACCGCCATGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAAAGAGTGCACGAGTGAAGATGATGAGAAGACTTGTAAGTTGAAGAAGAATAAATCTGGGTTTGGAGGGTGGATGACGACGAACTTTTTTTGTAATTTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGATTCTAAACGAACAGTGTAAAGATAAATATGAAGAAGTTTAAACTTTTGGGGGCCTGGGGAACAGGATCTGCCTTGCTTTTACATGTGTGAACTTAGTTTAAACTTTTTGTTTCATCCGATCAAACTTTTGATTAGTTTGCGTTATATACTACCTTATCTTGAATTAAATTAAGGTTTGGGAATTTTTGTTTATATACTTTTGTTAGAAATGTAAATCTCACCATGTTCGATGAATGGTTAAATATACTCCATGCTCATTAAATTGATTTTTTCCCCCTTCTTACCAGTTTATGTGAAATGAGATTTCCCACTCCCTTATGCATCATCCACGACTTATAATTTAGACTCGAACAATTAGTTGATCTTTTTCTCCTTTCTAAAGTTGTTGACTCTTTCTGCACAAATTGTTGGATGAAATTTCTATAATGTAACTGCTTTTGAGACTATTATTCGCGTTGACTTTCTTTTTTATTTTAACTTATTGAAAAGACAAAATAACCACCAAACCAAATCTTAAATTATAATTTACAAGAGTAAAGAGACGTTTAGAGTAAGGGTGAATCAAGGTTATGACATCTAGAGAGTTGTGAACTTCTAACGTCATAACGTAAGAAGTTAATAGTGTATAAAATTGATGTTTTTTCAATTATGGAACTCACAAACCTCCTAGACCAAATGAAATAATATTTCACAAATACATATTCTCAACTTCTACTTTCAAACTCTTTAGGCCAAATGTGTCTTTGGCCAAGGATTTTAGAACCAAGAGCAGGGAAGTGACGGCCTAAGGAATTTAAAAGTAGAGATTTTGTTAACTCTACTATTTGTTTGGTCAAATGAGTTATGTGTTTCACCAATAAAATTATCTATTTTATAACTTACCGATCATTGCATCATGGGCCAACTTCTTACTTCTACTGATCCTTGCATCATGAGCCAACTTCTTACTTCTTAGACGGTGTTTGGGACTATCAGCAAGTTATAGCTAACCAATGTATATTAAATAGTATTTTATATGACATAGAATTGTTATTATAATCTTAAATAGTTATTATGGAGACAACTCTTTAGTTGTTCCAATTCTTACCAACATTCTTCTTCGTGTTGTTTCTCTTTTTTTATAAATCATAATTTGATCTTTAAAACGGTGGCTCTGAGTGTGGGATGGCATTTATATAACGATTGGCGAATGTGAACTAAGCACAAATTCACAATTACGATTCCAAGGGTTAATTCCTACACGTAGTAAATAATTTTTAGCCGCGAAGAACCCCTTCCAATCTTTACCCCGCACGTCCTACTCTCTCAATAACTTTCAATTGCTCCTCTACCCTCTACCACTTCTTGGCTTGAACCCTAAAAAACTCGATTTAACCCACCGTGATCCGACCACTCCGGTTCCTTTCCCGCTACCAGTATTCATTTTGGCGCCACCATTCTCCCCACCGCTACTTCGAACAAGAGACCCCTAACTGTGAGTAATCTATTTCTCTCTTTTTCTTTAGGCCCTTTGGCGAACTGGATTCTGCATCGTCTCTACCTAGTTTCCGAGAAACAATCAGGCAAAGGAAATGGATTTGACAAAAAGAACATGTATAACGAGCAGTTGGGTTCTTTACAAATTTTGATATTTGTTTATATTCTCAAAGAGAACCGCGGGTTACCTCTAGAAAGTGAAGTCTAG

mRNA sequence

ATGGCCTGCAACAACAAAACCCATTCAAGAGGTAGAGTGGCTTTCTCGTGGGAAAATAAGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCCCACGGCTTCTGTGACGGCGACGATCCGTTGAAGAAGCAGCTGCAGCCACCGCCATGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAAAGAGTGCACGAGTGAAGATGATGAGAAGACTTGCCCTTTGGCGAACTGGATTCTGCATCGTCTCTACCTAGTTTCCGAGAAACAATCAGGCAAAGGAAATGGATTTGACAAAAAGAACATGTATAACGAGCAGTTGGGTTCTTTACAAATTTTGATATTTGTTTATATTCTCAAAGAGAACCGCGGGTTACCTCTAGAAAGTGAAGTCTAG

Coding sequence (CDS)

ATGGCCTGCAACAACAAAACCCATTCAAGAGGTAGAGTGGCTTTCTCGTGGGAAAATAAGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCCCACGGCTTCTGTGACGGCGACGATCCGTTGAAGAAGCAGCTGCAGCCACCGCCATGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAAAGAGTGCACGAGTGAAGATGATGAGAAGACTTGCCCTTTGGCGAACTGGATTCTGCATCGTCTCTACCTAGTTTCCGAGAAACAATCAGGCAAAGGAAATGGATTTGACAAAAAGAACATGTATAACGAGCAGTTGGGTTCTTTACAAATTTTGATATTTGTTTATATTCTCAAAGAGAACCGCGGGTTACCTCTAGAAAGTGAAGTCTAG

Protein sequence

MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCPLANWILHRLYLVSEKQSGKGNGFDKKNMYNEQLGSLQILIFVYILKENRGLPLESEV*

Homology

[Close]

BLAST of CsGy4G023300 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 311 bits (797), Expect = 3.22e-107
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60
           MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61  QKDGGAEDPFLAAYKECTSEDDEKTCPLANWILHRLYLVSEKQSGKGNGFDKKNMYNEQL 120
           QKDGGAEDPFLAAYKECTSEDDEKTCPLANWILHRLYLVSEKQSGKGNGFDKKNMYNEQL
Sbjct: 61  QKDGGAEDPFLAAYKECTSEDDEKTCPLANWILHRLYLVSEKQSGKGNGFDKKNMYNEQL 120

Query: 121 GSLQILIFVYILKENRGLPLESEV 144
           GSLQILIFVYILKENRGLPLESEV
Sbjct: 121 GSLQILIFVYILKENRGLPLESEV 144

[Close]

BLAST of CsGy4G023300 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 2.74e-51
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDG--DDPLKKQLQPPPCTPARKGNK 60
          MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNK
Sbjct: 1  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61 KL-QKDGGAEDPFLAAYKECTSEDDEKTCPL 88
          KL QKDGGAEDPFLAAY+ECTSEDDEK C L
Sbjct: 61 KLLQKDGGAEDPFLAAYRECTSEDDEKNCKL 91

[Close]

BLAST of CsGy4G023300 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (330), Expect = 4.75e-36
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60
           M C+N+ HSRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+
Sbjct: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61  QKDGGAEDPFLAAYKECTSEDDEKTCPL----ANWILHRLYLVSEKQSGKG 107
           QKDG  EDPFLAA++EC++ +DEK C L      +++  L  ++   +G G
Sbjct: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGFVIRPLRFLTRYHTGFG 111

[Close]

BLAST of CsGy4G023300 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131 bits (330), Expect = 2.99e-32
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60
           M C+N+ HSRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+
Sbjct: 1   MTCSNRAHSRGRVAFSWENKPGECKAAVAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKV 60

Query: 61  QKDGGAEDPFLAAYKECTSEDDEKTCPL----ANWILHRLYLVSEKQSGKG 107
           QKDG  EDPFLAA++EC++ +DEK C L      +++  L  ++   +G G
Sbjct: 61  QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGFVIRPLRFLTRYHTGFG 111

[Close]

BLAST of CsGy4G023300 vs. NCBI nr
Match: ESR41328.1 (hypothetical protein CICLE_v10027255mg [Citrus clementina])

HSP 1 Score: 65.9 bits (159), Expect = 1.89e-10
Identity = 41/97 (42.27%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPC---------- 60
          M+ +NK HS+G V FSWENKPGV K  +   H   DGD     +L PPPC          
Sbjct: 1  MSLSNKFHSKGNVPFSWENKPGVSKVII---HNGFDGDGHCSSKLPPPPCQEESKKFSVT 60

Query: 61 ---TPARKG------NKKLQKDGGAEDPFLAAYKECT 78
             + +RKG      NK  Q      DPFL A KECT
Sbjct: 61 CPESSSRKGLGLWNNNKHDQ-----PDPFLVALKECT 89

[Close]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL
Match: A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 4.40e-61
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60
          MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKL 60

Query: 61 QKDGGAEDPFLAAYKECTSEDDEKTCPL 88
          QKDGGAEDPFLAAYKECTSEDDEKTC L
Sbjct: 61 QKDGGAEDPFLAAYKECTSEDDEKTCKL 88

[Close]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL
Match: A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 1.33e-51
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDG--DDPLKKQLQPPPCTPARKGNK 60
          MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNK
Sbjct: 1  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61 KL-QKDGGAEDPFLAAYKECTSEDDEKTCPL 88
          KL QKDGGAEDPFLAAY+ECTSEDDEK C L
Sbjct: 61 KLLQKDGGAEDPFLAAYRECTSEDDEKNCKL 91

[Close]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL
Match: V4S1V1 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027255mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.17e-11
Identity = 41/97 (42.27%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPC---------- 60
          M+ +NK HS+G V FSWENKPGV K  +   H   DGD     +L PPPC          
Sbjct: 1  MSLSNKFHSKGNVPFSWENKPGVSKVII---HNGFDGDGHCSSKLPPPPCQEESKKFSVT 60

Query: 61 ---TPARKG------NKKLQKDGGAEDPFLAAYKECT 78
             + +RKG      NK  Q      DPFL A KECT
Sbjct: 61 CPESSSRKGLGLWNNNKHDQ-----PDPFLVALKECT 89

[Close]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL
Match: A0A067DZ74 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g044566mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.02e-10
Identity = 41/97 (42.27%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPC---------- 60
          M+ +NK HS+G V FSWENKPGV K  +   H   DGD     +L PPPC          
Sbjct: 1  MSLSNKFHSKGNVPFSWENKPGVSKVII---HNGFDGDGHCSSKLPPPPCQAESKKFSVT 60

Query: 61 ---TPARKG------NKKLQKDGGAEDPFLAAYKECT 78
             + +RKG      NK  Q      DPFL A KECT
Sbjct: 61 CPESSSRKGLGLWNNNKHDQ-----PDPFLVALKECT 89

[Close]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL
Match: A0A5N6QNQ2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004386 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.80e-10
Identity = 44/124 (35.48%), Postives = 57/124 (45.97%), Query Frame = 0


Query: 4   NNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGD-----------------DPLKKQLQ 63
           + K  S+G V FSWE++PGVCKA     H  C  D                  P KK + 
Sbjct: 3   HRKVDSQGSVPFSWEDQPGVCKATH---HQECPIDIRLHALKLTSSQSPIASTPAKKNIP 62

Query: 64  PPPCT--PARKGNKKLQKDGGAEDPFLAAYKECT----SEDDEKTCPLANWILHRLYLVS 104
           PPPC   P R+ N K Q++    DPFL AY +CT    SE  +  C L + +     + S
Sbjct: 63  PPPCPIQPPRRSNSKKQEE---VDPFLVAYNQCTKVVKSESKKANCTLGSKLRKTKSIFS 120

The following BLAST results are available for this feature:

BLAST of CsGy4G023300 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G023300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649893.1	3.22e-107	100.00	hypothetical protein Csa_012691 [Cucumis sativus]	[more]
KAA0064468.1	2.74e-51	87.91	hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201...	[more]
KAG7024319.1	4.75e-36	55.86	hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591440.1	2.99e-32	55.86	Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
ESR41328.1	1.89e-10	42.27	hypothetical protein CICLE_v10027255mg [Citrus clementina]	[more]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2M9	4.40e-61	98.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
A0A5A7VA56	1.33e-51	87.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
V4S1V1	9.17e-11	42.27	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027255mg PE=4 ...	[more]
A0A067DZ74	1.02e-10	42.27	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g044566m...	[more]
A0A5N6QNQ2	2.80e-10	35.48	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004386 PE=4 SV=1	[more]

BLAST of CsGy4G023300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..64
None	No IPR available	PANTHER	PTHR33696:SF15	SUBFAMILY NOT NAMED	coord: 4..87
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 4..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G023300.2	CsGy4G023300.2	mRNA