CsGy4G022195 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G022195
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 28728882 .. 28729579 (-)
RNA-Seq Expression	CsGy4G022195
Synteny	CsGy4G022195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAACACAAAAGCACATGAGTATCTTCCTTGAACCAAAAAAATATCTATAAATACTTCTATTTGTTCAAAGCTTGGAATCATCCCAACACCTTTTCTCTTCTCTCTCATTTGAGTTATAACCTAAGATTTCTCTCCATTTCTCAAACAACTAAAATGAGTACTCCATCAATTAAGCTCATCTCTACCTTCGTTGCCATCCTCATTTTATCTTCTACCTTCCATGTATCACACACTCAAGCAAGAATGCCACCGACGAAGAATCTCGATCGCGTCGAAATTTCCAAAGATCTCCATCCAAAAATTGAAGAAACGGTTGCCGTTGCTCCTCTTAAGTCGGAACCACTAGCATTTGATCGTGACACTTTCTTTACTACTAGCAACGCGGAGGTGCTAGGCGGCGACTTTCGTCCAACCACCCCGGGCCATAGCCCTGGGGCCGGTCACTCTGTTGCACCAACCAGCCACATGGATTCTAAAATACATTAAGATTAGATCATATTTTATAAATCACTTATTATACAAGTTATTAATCATGATATATAGTTAGTAACTTAGTTTAGTTATGTATTTATATTTTATTATGTTCATAATGCATGTTTTATTGTTATGGATATGTACTTCAAATCTATTTATAATGTATAATTAGTTATGGGAGTTTGGATTTTTTATTTTTCTATATGTACTTTCTCAACTTTTT

mRNA sequence

CTAACACAAAAGCACATGAGTATCTTCCTTGAACCAAAAAAATATCTATAAATACTTCTATTTGTTCAAAGCTTGGAATCATCCCAACACCTTTTCTCTTCTCTCTCATTTGAGTTATAACCTAAGATTTCTCTCCATTTCTCAAACAACTAAAATGAGTACTCCATCAATTAAGCTCATCTCTACCTTCGTTGCCATCCTCATTTTATCTTCTACCTTCCATGTATCACACACTCAAGCAAGAATGCCACCGACGAAGAATCTCGATCGCGTCGAAATTTCCAAAGATCTCCATCCAAAAATTGAAGAAACGGTTGCCGTTGCTCCTCTTAAGTCGGAACCACTAGCATTTGATCGTGACACTTTCTTTACTACTAGCAACGCGGAGGTGCTAGGCGGCGACTTTCGTCCAACCACCCCGGGCCATAGCCCTGGGGCCGGTCACTCTGTTGCACCAACCAGCCACATGGATTCTAAAATACATTAAGATTAGATCATATTTTATAAATCACTTATTATACAAGTTATTAATCATGATATATAGTTAGTAACTTAGTTTAGTTATGTATTTATATTTTATTATGTTCATAATGCATGTTTTATTGTTATGGATATGTACTTCAAATCTATTTATAATGTATAATTAGTTATGGGAGTTTGGATTTTTTATTTTTCTATATGTACTTTCTCAACTTTTT

Coding sequence (CDS)

ATGAGTACTCCATCAATTAAGCTCATCTCTACCTTCGTTGCCATCCTCATTTTATCTTCTACCTTCCATGTATCACACACTCAAGCAAGAATGCCACCGACGAAGAATCTCGATCGCGTCGAAATTTCCAAAGATCTCCATCCAAAAATTGAAGAAACGGTTGCCGTTGCTCCTCTTAAGTCGGAACCACTAGCATTTGATCGTGACACTTTCTTTACTACTAGCAACGCGGAGGTGCTAGGCGGCGACTTTCGTCCAACCACCCCGGGCCATAGCCCTGGGGCCGGTCACTCTGTTGCACCAACCAGCCACATGGATTCTAAAATACATTAA

Protein sequence

MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH*

Homology

[Close]

BLAST of CsGy4G022195 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus])

HSP 1 Score: 220 bits (560), Expect = 3.64e-72
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60
           MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK
Sbjct: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60

Query: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH
Sbjct: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of CsGy4G022195 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 1.72e-52
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60
           M TPSIKLISTF AILILSSTF++SHTQAR+ P +N D V I +DLH K  ETVAVAPLK
Sbjct: 1   MCTPSIKLISTFAAILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLK 60

Query: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           S PLAFD DT F T + EVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH
Sbjct: 61  SGPLAFDHDTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of CsGy4G022195 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 4.04e-51
Identity = 85/110 (77.27%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60
           M TPSIKLISTF AILILSSTF++SHTQAR+ P +N D V I +D+H K  ETVAVAPLK
Sbjct: 1   MCTPSIKLISTFAAILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLK 60

Query: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           S PLAFD DT F T + EVLGGDFRPTT GHSPGAGHSVAPTSHMDSKIH
Sbjct: 61  SGPLAFDHDTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of CsGy4G022195 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (262), Expect = 7.48e-27
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 10  STFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRD 69
           S  +A LILSS  ++SHT  R+ P ++     I  +LH KI ET  VAPL S P AF R 
Sbjct: 6   SICMAFLILSSICNISHTHGRLLPVEH----PIVGNLHRKIVETAGVAPLGSRPPAFQRT 65

Query: 70  TFFT-TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           T      +AEVLGGDFRPTTPGHSPG GHS+AP SH+DSKIH
Sbjct: 66  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

[Close]

BLAST of CsGy4G022195 vs. NCBI nr
Match: KAG7024239.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 7.72e-19
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 14  AILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRDTFFT 73
           A LILSS  ++SHT  R+ P ++     I  + H KI ET  VAPL S P AF R T   
Sbjct: 2   AFLILSSICNISHTHGRLLPVEH----PIVGNHHRKIVETAGVAPLGSRPPAFQRTTSSP 61

Query: 74  -TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHM 105
              +AEVLGGDFRPTTPGHSPG GHS+AP SH+
Sbjct: 62  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHI 90

[Close]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.76e-72
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60
           MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK
Sbjct: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60

Query: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH
Sbjct: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 8.31e-53
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60
           M TPSIKLISTF AILILSSTF++SHTQAR+ P +N D V I +DLH K  ETVAVAPLK
Sbjct: 1   MCTPSIKLISTFAAILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLK 60

Query: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           S PLAFD DT F T + EVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH
Sbjct: 61  SGPLAFDHDTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 1.96e-51
Identity = 85/110 (77.27%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSTPSIKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLK 60
           M TPSIKLISTF AILILSSTF++SHTQAR+ P +N D V I +D+H K  ETVAVAPLK
Sbjct: 1   MCTPSIKLISTFAAILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLK 60

Query: 61  SEPLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110
           S PLAFD DT F T + EVLGGDFRPTT GHSPGAGHSVAPTSHMDSKIH
Sbjct: 61  SGPLAFDHDTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL
Match: A0A2J6MI11 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.11e-06
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 59  LKSEPLAFDRDTFFTTSN---------AEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSK 108
           LKS   A   +T  +T+N           +  GDFRPTTPGHSPGAGHSV PT+  D +
Sbjct: 38  LKSNKGATSTETTISTNNHYHGQDSGFVVINEGDFRPTTPGHSPGAGHSVGPTATFDPQ 96

[Close]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL
Match: A0A6A2XD35 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112649pilonHSYRG00036 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.01e-05
Identity = 33/98 (33.67%), Postives = 44/98 (44.90%), Query Frame = 0


Query: 6   IKLISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLA 65
           I L+   + + +L  +F +  T+ R+   + LD  E  K         V V  +    L 
Sbjct: 4   INLVLAALLVSVLFFSFGIKFTEERILKVEKLD--ETGK---------VGVTDVNRHILE 63

Query: 66  FDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTS 103
            D        N    G DF+PTTPGHSPGAGHS  P S
Sbjct: 64  EDSSAGNVNGNTVFSGDDFQPTTPGHSPGAGHSNGPAS 90

The following BLAST results are available for this feature:

BLAST of CsGy4G022195 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G022195 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55172.1	3.64e-72	100.00	hypothetical protein Csa_012400 [Cucumis sativus]	[more]
TYK20222.1	1.72e-52	79.09	hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa]	[more]
KAA0064365.1	4.04e-51	77.27	hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa]	[more]
KAG6591363.1	7.48e-27	57.84	Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7024239.1	7.72e-19	55.91	Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3I5	1.76e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1	[more]
A0A5D3D9H8	8.31e-53	79.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEP2	1.96e-51	77.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2J6MI11	3.11e-06	47.46	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1	[more]
A0A6A2XD35	9.01e-05	33.67	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112649pilon...	[more]

BLAST of CsGy4G022195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G022195.1	CsGy4G022195.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process