CsGy4G022180 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G022180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 28715060 .. 28716311 (-)
RNA-Seq Expression	CsGy4G022180
Synteny	CsGy4G022180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGTCTTGTGAATGCACATGAACTGTTCGACAAGATGCAAATGGGTTTTGGCAATGAAATTACAGCTGGGGTTACTGTTGAAATGCCTTTGAGAAACATGTAAACACTTCTGGCTACCTACTTTATTAATTACGTAGAGTTTTAATGATTCAAAGTACACAAAAATATTTAAAACTTCTTTGAAGAACTCGGCAGCCCCGATACTTTTGGAATTCAAATAAGCACTAGTCTCATCCCAACTGTGATTAGAATAGGGTCCCCAATAATTAAATTCCCCCCATCCTCGAAAAGATTATTGCTTTATTACTTTTGTTGATCATGAAGCATTAAAATATTTCTGCTTTGAAGTCTCTGTCACGTGGTTGTGAGTGCTTACTTTCATTTTTTTTTTTTAATTTCCCACAAGTTTTTTTTAGTCGAAAAGTGACCATTTGTATCATGAAAGCATCCATTATTCCATGTGTAAGTGACAAAATAGCCAAATTTGCTTTTCAAAAAACAGAGATTTTATTAAATACTGTTTTTCCAGCCAGAAGCTTGTTTTTAAAGAAATCAATTGTATTCGACATATGCATTGAAGAGGTTGAAGGGACCTCGAGCATTGGATAAGATACTTCATTTGTTATCAATTATCTTTTCTTGATGGATAAGGAAGAAAAGGTAGGTGAACGGCATAAATTGGTACTAAGTGAACAATTCGTTTTCTTTCCCTCCTTTCAAGTCAGCCCTGAAAATGCAAATCTGTTAGGATTCATATGAAGGGCAAAGCTGAGAAATGGTTTGTATATTTCTTGTATTGAAAGGGATTATTATAATGAGCTTAGGTATTAGGTAAGTAATTAAAAACCAATACTAATATTATACATATGAATCTAACCTGTCCATTGTTCAGCACTTCTGCTTTGGATCTTCCAAAAGAAGTAAAAATTTATTAATTAGTTGGCAAGCATGTGAAACTAGCAGCCTTTGCCGTCAAATTCATTCCTTACTAATATTTTATGTAATCGCCTCTCATATGTGCTTCCAAAATCACTAACAATCGCAACCCACATGGAATTTGGTTAATATTTAACCAATGAAATCTTAATTACTCTGGTTGTACTCTGTTTTTCAGGCTTAATTATATTTTGCGAGTCCATTCCCAAGAGAAAGAAAGTGGGCAAGAAAGAAAGGATATAAAGGAGATGGGCTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACACAGACATGTTGTGGACCATAG

mRNA sequence

ATGGGCCGTCTTGTGAATGCACATGAACTGTTCGACAAGATGCAAATGGGTTTTGGCAATGAAATTACAGCTGGGGTTACTGTTGAAATGCCTTTGAGAAACATGCTTAATTATATTTTGCGAGTCCATTCCCAAGAGAAAGAAAGTGGGCAAGAAAGAAAGGATATAAAGGAGATGGGCTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACACAGACATGTTGTGGACCATAG

Coding sequence (CDS)

ATGGGCCGTCTTGTGAATGCACATGAACTGTTCGACAAGATGCAAATGGGTTTTGGCAATGAAATTACAGCTGGGGTTACTGTTGAAATGCCTTTGAGAAACATGCTTAATTATATTTTGCGAGTCCATTCCCAAGAGAAAGAAAGTGGGCAAGAAAGAAAGGATATAAAGGAGATGGGCTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACACAGACATGTTGTGGACCATAG

Protein sequence

MGRLVNAHELFDKMQMGFGNEITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMGFEREGTRCSMMTQTCCGP*

Homology

[Close]

BLAST of CsGy4G022180 vs. NCBI nr
Match: KGN55170.1 (hypothetical protein Csa_012741 [Cucumis sativus])

HSP 1 Score: 159 bits (403), Expect = 3.23e-49
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGRLVNAHELFDKMQMGFGNEITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60
          MGRLVNAHELFDKMQMGFGN ITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTQTCCGP 78
          FEREGTRCSMMTQTCCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

[Close]

BLAST of CsGy4G022180 vs. NCBI nr
Match: XP_038899842.1 (uncharacterized protein LOC120087065 isoform X2 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 1.68e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1   MGRLVNAHELFDKMQMGFGNEITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60
           MGR ++AH+LFDKMQ+ F   I AG TVEMPLRN LNYIL+V+SQ+KE    +K  K  G
Sbjct: 42  MGRRMDAHKLFDKMQIDFDIGIAAGATVEMPLRNKLNYILKVYSQKKEKRARKKGYKGDG 101

Query: 61  FER 63
             +
Sbjct: 102 LRK 104

[Close]

BLAST of CsGy4G022180 vs. NCBI nr
Match: XP_038899841.1 (uncharacterized protein LOC120087065 isoform X1 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 2.41e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1   MGRLVNAHELFDKMQMGFGNEITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60
           MGR ++AH+LFDKMQ+ F   I AG TVEMPLRN LNYIL+V+SQ+KE    +K  K  G
Sbjct: 58  MGRRMDAHKLFDKMQIDFDIGIAAGATVEMPLRNKLNYILKVYSQKKEKRARKKGYKGDG 117

Query: 61  FER 63
             +
Sbjct: 118 LRK 120

[Close]

BLAST of CsGy4G022180 vs. ExPASy TrEMBL
Match: A0A0A0KZQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639090 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 1.56e-49
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGRLVNAHELFDKMQMGFGNEITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60
          MGRLVNAHELFDKMQMGFGN ITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTQTCCGP 78
          FEREGTRCSMMTQTCCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

The following BLAST results are available for this feature:

BLAST of CsGy4G022180 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G022180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55170.1	3.23e-49	98.72	hypothetical protein Csa_012741 [Cucumis sativus]	[more]
XP_038899842.1	1.68e-13	57.14	uncharacterized protein LOC120087065 isoform X2 [Benincasa hispida]	[more]
XP_038899841.1	2.41e-13	57.14	uncharacterized protein LOC120087065 isoform X1 [Benincasa hispida]	[more]

BLAST of CsGy4G022180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZQ5	1.56e-49	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639090 PE=4 SV=1	[more]

BLAST of CsGy4G022180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G022180.2	CsGy4G022180.2	mRNA