CsGy4G021425 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G021425
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 28073316 .. 28073558 (-)
RNA-Seq ExpressionCsGy4G021425
SyntenyCsGy4G021425
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAGCCATTATTGTAATGATAAAGTTCTTCTTCGTTTGCTTTATTACTGTAATCATTTTGCTGCCATTTTTGAGCTTTGGATCAGCTCCTCCTCCTCCTCCTCCTCCTTCTTCTCCTCCAAGTGGCTTCATGGAAAGTGCTAAGGATGCATTAATGGCTAGTCTCCAAAGACAAGGTGGAAAGCCCTTTCAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTAA

mRNA sequence

ATGGCTAAAGCCATTATTGTAATGATAAAGTTCTTCTTCGTTTGCTTTATTACTGTAATCATTTTGCTGCCATTTTTGAGCTTTGGATCAGCTCCTCCTCCTCCTCCTCCTCCTTCTTCTCCTCCAAGTGGCTTCATGGAAAGTGCTAAGGATGCATTAATGGCTAGTCTCCAAAGACAAGGTGGAAAGCCCTTTCAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTAA

Coding sequence (CDS)

ATGGCTAAAGCCATTATTGTAATGATAAAGTTCTTCTTCGTTTGCTTTATTACTGTAATCATTTTGCTGCCATTTTTGAGCTTTGGATCAGCTCCTCCTCCTCCTCCTCCTCCTTCTTCTCCTCCAAGTGGCTTCATGGAAAGTGCTAAGGATGCATTAATGGCTAGTCTCCAAAGACAAGGTGGAAAGCCCTTTCAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTAA

Protein sequence

MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGGPDQHHH*
Homology
BLAST of CsGy4G021425 vs. NCBI nr
Match: KGN55082.1 (hypothetical protein Csa_012608 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 2.51e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0

Query: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSS-PPSGFMESAKDALMASLQR 60
          MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSS PPSGFMESAKDALMASLQR
Sbjct: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQR 60

Query: 61 QGGKPFQVQRTSPGGPDQHHH 80
          +GGKPFQVQRTSPGGPDQHHH
Sbjct: 61 RGGKPFQVQRTSPGGPDQHHH 81

BLAST of CsGy4G021425 vs. NCBI nr
Match: KAG6607905.1 (hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 2.98e-19
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 15 CFITVIILLPFLSFGSAPPPPPPPSSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGG 74
          CF  VIIL+PFLSFG+  P         SGFMESA++ALMASL RQG + FQVQR++PGG
Sbjct: 12 CFFIVIILVPFLSFGAPSP---------SGFMESAREALMASLHRQGERRFQVQRSTPGG 68

Query: 75 PDQHHH 80
          PDQHHH
Sbjct: 72 PDQHHH 68

BLAST of CsGy4G021425 vs. NCBI nr
Match: TQD72240.1 (hypothetical protein C1H46_042222 [Malus baccata])

HSP 1 Score: 54.3 bits (129), Expect = 1.68e-07
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 16 FITVIILLPFLSFGSAPPPPPPPSSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGGP 75
          F  ++ILL F +   A  P P   S     MESAK  L AS +RQ GKPF+ +R SPGGP
Sbjct: 8  FCLLLILLSFSNSDQARFPVPLSDSNQRAMMESAKQVLKASSERQVGKPFESKRVSPGGP 67

Query: 76 DQHHH 80
          D  HH
Sbjct: 68 DPRHH 72

BLAST of CsGy4G021425 vs. NCBI nr
Match: XP_021288729.1 (uncharacterized protein LOC110419919 [Herrania umbratica])

HSP 1 Score: 55.8 bits (133), Expect = 1.88e-07
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 38  PSSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGGPDQHHH 80
           PSS     +E A++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 99  PSSSKRAMIEEAREAIKASVQRHGGNPFESKRLSPGGPDPHHH 141

BLAST of CsGy4G021425 vs. NCBI nr
Match: KAE8703294.1 (putative Mitochondrial transcription termination factor family protein [Hibiscus syriacus])

HSP 1 Score: 55.1 bits (131), Expect = 2.80e-07
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 46  MESAKDALMASLQRQGGKPFQVQRTSPGGPDQHHH 80
           +E  ++A+ AS+QR GG+PF+ +RTSPGGPD HHH
Sbjct: 92  VEEGREAIKASIQRNGGEPFESKRTSPGGPDPHHH 126

BLAST of CsGy4G021425 vs. ExPASy TrEMBL
Match: A0A0A0L3B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 1.21e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0

Query: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSS-PPSGFMESAKDALMASLQR 60
          MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSS PPSGFMESAKDALMASLQR
Sbjct: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQR 60

Query: 61 QGGKPFQVQRTSPGGPDQHHH 80
          +GGKPFQVQRTSPGGPDQHHH
Sbjct: 61 RGGKPFQVQRTSPGGPDQHHH 81

BLAST of CsGy4G021425 vs. ExPASy TrEMBL
Match: A0A540KDP1 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_042222 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.14e-08
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 16 FITVIILLPFLSFGSAPPPPPPPSSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGGP 75
          F  ++ILL F +   A  P P   S     MESAK  L AS +RQ GKPF+ +R SPGGP
Sbjct: 8  FCLLLILLSFSNSDQARFPVPLSDSNQRAMMESAKQVLKASSERQVGKPFESKRVSPGGP 67

Query: 76 DQHHH 80
          D  HH
Sbjct: 68 DPRHH 72

BLAST of CsGy4G021425 vs. ExPASy TrEMBL
Match: A0A6J1AQE4 (uncharacterized protein LOC110419919 OS=Herrania umbratica OX=108875 GN=LOC110419919 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.12e-08
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 38  PSSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGGPDQHHH 80
           PSS     +E A++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 99  PSSSKRAMIEEAREAIKASVQRHGGNPFESKRLSPGGPDPHHH 141

BLAST of CsGy4G021425 vs. ExPASy TrEMBL
Match: A0A6A3AFG2 (Putative Mitochondrial transcription termination factor family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110472pilonHSYRG00254 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.36e-07
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 46  MESAKDALMASLQRQGGKPFQVQRTSPGGPDQHHH 80
           +E  ++A+ AS+QR GG+PF+ +RTSPGGPD HHH
Sbjct: 92  VEEGREAIKASIQRNGGEPFESKRTSPGGPDPHHH 126

BLAST of CsGy4G021425 vs. ExPASy TrEMBL
Match: A0A061F8J8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_031710 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.05e-07
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 39  SSPPSGFMESAKDALMASLQRQGGKPFQVQRTSPGGPDQHHH 80
           SS     +E A++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 100 SSSKRAMIEEAREAIKASVQRNGGNPFESKRLSPGGPDPHHH 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN55082.12.51e-4597.53hypothetical protein Csa_012608 [Cucumis sativus][more]
KAG6607905.12.98e-1965.15hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sorori... [more]
TQD72240.11.68e-0749.23hypothetical protein C1H46_042222 [Malus baccata][more]
XP_021288729.11.88e-0755.81uncharacterized protein LOC110419919 [Herrania umbratica][more]
KAE8703294.12.80e-0760.00putative Mitochondrial transcription termination factor family protein [Hibiscus... [more]
Match NameE-valueIdentityDescription
A0A0A0L3B31.21e-4597.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1[more]
A0A540KDP18.14e-0849.23Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_042222 PE=4 SV=1[more]
A0A6J1AQE49.12e-0855.81uncharacterized protein LOC110419919 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A6A3AFG21.36e-0760.00Putative Mitochondrial transcription termination factor family protein OS=Hibisc... [more]
A0A061F8J85.05e-0754.76Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_031710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G021425.1CsGy4G021425.1mRNA