CsGy4G021420 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G021420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CLAVATA3/ESR-RELATED 1
Location	Gy14Chr4: 28069029 .. 28069626 (-)
RNA-Seq Expression	CsGy4G021420
Synteny	CsGy4G021420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAAAAAAGGAAAAAAAGAAACAACCCCCTTAAAACAAAAGTGTGTGTGTTGTGAAGTTGAATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGAATAGTTATACATTTCTTCTTTTTCTTTCTTTCATTTTTACACTTTCAAGTTCAACGAAATCGCTTGATGAAAGTTGAACTAGAAATGGTAATAGAGAATGAGTTATGCTCAAATTTACGTCGTATTTGTTTTTGTTTTGTCCGTGAGCTATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATACACCACATCATTATTCCTCTTAATTTCTTTTCGATTTTAGTTTCGATCAC

mRNA sequence

CAAAAAAAAAAGGAAAAAAAGAAACAACCCCCTTAAAACAAAAGTGTGTGTGTTGTGAAGTTGAATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGAATAGTTATACATTTCTTCTTTTTCTTTCTTTCATTTTTACACTTTCAAGTTCAACGAAATCGCTTGATGAAAGTTGAACTAGAAATGGTAATAGAGAATGAGTTATGCTCAAATTTACGTCGTATTTGTTTTTGTTTTGTCCGTGAGCTATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATACACCACATCATTATTCCTCTTAATTTCTTTTCGATTTTAGTTTCGATCAC

Coding sequence (CDS)

ATGGCTAATTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATACTGCTCTTGTGTTCTTCCATTTCTGAAAGTCGTTTACTATCATCTCCGTCTCAGTCTCAGTCTCCGTCCTCATCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGCGGAAGAAATGTTGAAGTTTATCATTGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Protein sequence

MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH*

Homology

[Close]

BLAST of CsGy4G021420 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 2.60e-50
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of CsGy4G021420 vs. NCBI nr
Match: XP_031267366.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 55.8 bits (133), Expect = 1.13e-07
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 43  SNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 87
           SN +  + ++NA+EMLK  ++ +E LG+ F SKRLSPGGPDPRHH
Sbjct: 60  SNDEGRVLMENAKEMLKDGVKRQEILGKFFDSKRLSPGGPDPRHH 104

[Close]

BLAST of CsGy4G021420 vs. NCBI nr
Match: XP_031265123.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 53.5 bits (127), Expect = 9.01e-07
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 43  SNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 87
           SN +  + ++NA+EMLK  ++ +E LG+ F SKR+SPGGPDP HH
Sbjct: 60  SNDEGRVLMENAKEMLKDSVKRQEILGKFFDSKRVSPGGPDPHHH 104

[Close]

BLAST of CsGy4G021420 vs. NCBI nr
Match: RYQ96598.1 (hypothetical protein Ahy_B08g092417 [Arachis hypogaea])

HSP 1 Score: 52.0 bits (123), Expect = 2.19e-06
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 26 ESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPR 85
          E+R + SP   + P+S  ++   +FV+NA++MLK II  K+ LG  +   RLSPGGP+P 
Sbjct: 23 EARPVPSPQPPRRPTSLGHR---VFVENAKQMLKEIIRRKQLLGTQYKINRLSPGGPNPH 81

Query: 86 HH 87
          HH
Sbjct: 83 HH 81

[Close]

BLAST of CsGy4G021420 vs. NCBI nr
Match: KAF7836665.1 (CLAVATA3/ESR (CLE)-related protein 1-like [Senna tora])

HSP 1 Score: 51.2 bits (121), Expect = 5.39e-06
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 14 LVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFV 73
          L+ +LLL +SIS S+    PS S S +S+ N+ + +F +NA+++LK II   + LG    
Sbjct: 19 LLSLLLLSTSISISQARPLPS-SFSNNSNGNQSHHVFKENAKQVLKEIIRRHQLLGEQNY 78

Query: 74 SKRLSPGGPDPRHH 87
            RLSPGGPDP HH
Sbjct: 79 PTRLSPGGPDPHHH 91

[Close]

BLAST of CsGy4G021420 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 1.26e-50
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of CsGy4G021420 vs. ExPASy TrEMBL
Match: A0A444Y3W2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.06e-06
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 26 ESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPR 85
          E+R + SP   + P+S  ++   +FV+NA++MLK II  K+ LG  +   RLSPGGP+P 
Sbjct: 23 EARPVPSPQPPRRPTSLGHR---VFVENAKQMLKEIIRRKQLLGTQYKINRLSPGGPNPH 81

Query: 86 HH 87
          HH
Sbjct: 83 HH 81

[Close]

BLAST of CsGy4G021420 vs. ExPASy TrEMBL
Match: A0A2P5DTM2 (CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.46e-05
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 36 SQSPSSSSNK-KNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 87
          S SP S S+K K+++ ++NA+ +LK  I  +   GR FV  RLSPGGPDPRHH
Sbjct: 25 SPSPGSFSDKPKHQILMENAKRVLKDSIARQN--GRRFVPNRLSPGGPDPRHH 75

[Close]

BLAST of CsGy4G021420 vs. ExPASy TrEMBL
Match: A0A6A4MZR2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.56e-05
Identity = 22/48 (45.83%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 41 SSSNKKNELFVKNAEEMLKFIIEEKEKLG-RHFVSKRLSPGGPDPRHH 87
          S++N+ + +F+++++++LK II  K+ LG  H+ + RLSPGGPDP HH
Sbjct: 31 SNNNENHAIFMESSKQVLKEIIRRKQLLGITHYETNRLSPGGPDPHHH 78

[Close]

BLAST of CsGy4G021420 vs. ExPASy TrEMBL
Match: A0A6A5PKV4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.06e-05
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 43 SNKKNELFVKNAEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 87
          SN +N  F ++ ++MLK I   K+  G ++   RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75

[Close]

BLAST of CsGy4G021420 vs. TAIR 10
Match: AT1G73165.1 (CLAVATA3/ESR-RELATED 1 )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 14 LVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLGRHFV 73
          L+ + L+C S+S     SS S+   P++   K+  + ++ AEE+LK  +E+  + G +  
Sbjct: 7  LLCLFLICVSLSR----SSASRPMFPNADGIKRGRMMIE-AEEVLKASMEKLMERGFN-E 66

Query: 74 SKRLSPGGPDPRHH 88
          S RLSPGGPDPRHH
Sbjct: 67 SMRLSPGGPDPRHH 74

The following BLAST results are available for this feature:

BLAST of CsGy4G021420 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G021420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55081.1	2.60e-50	100.00	hypothetical protein Csa_012463 [Cucumis sativus]	[more]
XP_031267366.1	1.13e-07	57.78	CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera]	[more]
XP_031265123.1	9.01e-07	53.33	CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera]	[more]
RYQ96598.1	2.19e-06	45.16	hypothetical protein Ahy_B08g092417 [Arachis hypogaea]	[more]
KAF7836665.1	5.39e-06	45.95	CLAVATA3/ESR (CLE)-related protein 1-like [Senna tora]	[more]

BLAST of CsGy4G021420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M1	1.26e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1	[more]
A0A444Y3W2	1.06e-06	45.16	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1	[more]
A0A2P5DTM2	1.46e-05	52.83	CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 P...	[more]
A0A6A4MZR2	1.56e-05	45.83	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1	[more]
A0A6A5PKV4	2.06e-05	48.89	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1	[more]

BLAST of CsGy4G021420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73165.1	3.9e-04	40.54	CLAVATA3/ESR-RELATED 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G021420.2	CsGy4G021420.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
molecular_function	GO:0033612	receptor serine/threonine kinase binding