CsGy4G021180 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G021180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Precursor of CEP13
Location	Gy14Chr4: 27855296 .. 27855722 (+)
RNA-Seq Expression	CsGy4G021180
Synteny	CsGy4G021180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGCAGCAAAAAGTTGATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTATCCCAAGCACACATGAGCTTAGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATCGGCGTTGATGTTAATTATATGCTTCTTGGTGCTCTTCCAAAAGGCCCAACGCCTCCGTCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTCAGTGATGGTGATCGCGTCTTGGTATCTGCTCCGAGCCCCGGAATTGGCCATCGTTGATTCGTGAAGTTTGAGAGACTATATTTTAAGTTTTGAATGGTTTTTCTCCTATTGGTTACAAACATTTCTTTCTTTTCTTTTTGGGTTTGGGTTCATTGTGCATGTTTTTTTTTTTGTTTGTTAAATAACGATACACTCTTATTGTTATACACAC

mRNA sequence

ATGATGGGCAGCAAAAAGTTGATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTATCCCAAGCACACATGAGCTTAGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATCGGCGTTGATGTTAATTATATGCTTCTTGGTGCTCTTCCAAAAGGCCCAACGCCTCCGTCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTCAGTGATGGTGATCGCGTCTTGGTATCTGCTCCGAGCCCCGGAATTGGCCATCGTTGATTCGTGAAGTTTGAGAGACTATATTTTAAGTTTTGAATGGTTTTTCTCCTATTGGTTACAAACATTTCTTTCTTTTCTTTTTGGGTTTGGGTTCATTGTGCATGTTTTTTTTTTTGTTTGTTAAATAACGATACACTCTTATTGTTATACACAC

Coding sequence (CDS)

ATGATGGGCAGCAAAAAGTTGATAATGGTGGCATTGTTGGTGGTGGCCTTGGTGCTATCCCAAGCACACATGAGCTTAGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATCGGCGTTGATGTTAATTATATGCTTCTTGGTGCTCTTCCAAAAGGCCCAACGCCTCCGTCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTCAGTGATGGTGATCGCGTCTTGGTATCTGCTCCGAGCCCCGGAATTGGCCATCGTTGA

Protein sequence

MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDGDRVLVSAPSPGIGHR*

Homology

[Close]

BLAST of CsGy4G021180 vs. ExPASy Swiss-Prot
Match: Q9FZ54 (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-04
Identity = 34/98 (34.69%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 4  SKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAP 63
          S  +I + +L+V  VL            S     +VP G     + L ALPKG  PPS P
Sbjct: 7  SISMICLLILIVGFVLQS----------SQARKVLVPYGTSKG-LFLSALPKGNVPPSGP 66

Query: 64 SERGNPAPFSDGD------------RVLVSAPSPGIGH 90
          S++G+ +P  D D            R L S PSPG+GH
Sbjct: 67 SDKGHTSPPDDTDQRMVPENSPEIYRRLESVPSPGVGH 93

[Close]

BLAST of CsGy4G021180 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 173 bits (439), Expect = 2.45e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]

BLAST of CsGy4G021180 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (418), Expect = 3.92e-51
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]

BLAST of CsGy4G021180 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 3.23e-13
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61
          M +KK  M A L +A +L Q H +L IR   +K+ K+  +GV    MLLG+LP+GP PPS
Sbjct: 1  MCTKKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPS 60

Query: 62 APSERGNPAPFSDG 75
          APS R NPAPFS G
Sbjct: 61 APSNRENPAPFSGG 74

[Close]

BLAST of CsGy4G021180 vs. NCBI nr
Match: DAD48182.1 (TPA_asm: hypothetical protein HUJ06_018119 [Nelumbo nucifera])

HSP 1 Score: 52.4 bits (124), Expect = 2.26e-06
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 29 RKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGNPA---------PFSDGDRVL 88
          RKL N E K        + +LL ALPKGP PPS PS++G+             S  DR+L
Sbjct: 25 RKLLNMEKKKEIPASLADSLLLSALPKGPIPPSGPSKKGHAMIVDQKLFSLHLSRADRIL 84

[Close]

BLAST of CsGy4G021180 vs. NCBI nr
Match: KAF8413711.1 (hypothetical protein HHK36_001703 [Tetracentron sinense])

HSP 1 Score: 50.8 bits (120), Expect = 1.12e-05
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 25  SLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGNPA---------PFSDG 84
           +L  RKL + E K   + ++ + + L ALPKG  PPS+PS++G+           P +  
Sbjct: 31  TLEARKLLSMETKKKALSLE-DSLFLSALPKGTIPPSSPSKKGHAMIINEKLFALPLASI 90

Query: 85  DRVLVSAPSPGIGH 89
           DR+L S PSPGIGH
Sbjct: 91  DRILRSVPSPGIGH 103

[Close]

BLAST of CsGy4G021180 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 1.18e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]

BLAST of CsGy4G021180 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 1.90e-51
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MMGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPP 60
          MMGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPP
Sbjct: 1  MMGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPP 60

Query: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90
          SAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 61 SAPSERGNPAPFSDGDRVLVSAPSPGIGHR 90

[Close]

BLAST of CsGy4G021180 vs. ExPASy TrEMBL
Match: A0A6N2L486 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113295 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.01e-07
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 9  MVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGN 68
          ++ L ++ ++LS +H S   RK+  +E   V +      ++L  LPKGP PPS+PS  GN
Sbjct: 4  LITLPLILVLLSFSHGSSDARKIPCQEKGGVLLP---ETLVLNVLPKGPAPPSSPSGGGN 63

Query: 69 PAPF-SDGDRVLVSA-PSPGIGH 89
          P P  S+ +R+LVS+ PSPG+G+
Sbjct: 64 PIPILSETERILVSSNPSPGVGN 83

[Close]

BLAST of CsGy4G021180 vs. ExPASy TrEMBL
Match: A0A5B7APD8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_027968 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.30e-06
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 11  ALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGNPA 70
           +L+ + +++  A  SL  RKL + E KM    ++ + ++L A+PKG TPPS+PS +G+  
Sbjct: 43  SLIFILVLICVAPPSLEARKLLSME-KMKAPSLEDSSLVLSAIPKGATPPSSPSGKGHKM 102

Query: 71  PFSDG---------DRVLVSAPSPGIGHR 90
             ++          DR+L S PSPGIGH 
Sbjct: 103 VINERLFTLHLAHIDRILQSVPSPGIGHN 130

[Close]

BLAST of CsGy4G021180 vs. ExPASy TrEMBL
Match: A0A2G3A7S5 (uncharacterized protein LOC107861156 OS=Capsicum annuum OX=4072 GN=LOC107861156 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.62e-05
Identity = 35/83 (42.17%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 17 LVLSQAHMSLGIRKLSNK-EMKMVPIGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 76
          LVL+    S   RKL N  E+K VP  +D  Y  L ALPKG  P S PS++G+     + 
Sbjct: 16 LVLASFSSSTEARKLLNSYEVKKVPSLMDRLY--LNALPKGKVPASTPSKKGHSYTIDEK 75

Query: 77 ---------DRVLVSAPSPGIGH 89
                   DR+L S PSPG+GH
Sbjct: 76 LIARHLAAIDRILRSVPSPGVGH 96

[Close]

BLAST of CsGy4G021180 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-05
Identity = 34/98 (34.69%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 4  SKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPSAP 63
          S  +I + +L+V  VL            S     +VP G     + L ALPKG  PPS P
Sbjct: 7  SISMICLLILIVGFVLQS----------SQARKVLVPYGTSKG-LFLSALPKGNVPPSGP 66

Query: 64 SERGNPAPFSDGD------------RVLVSAPSPGIGH 90
          S++G+ +P  D D            R L S PSPG+GH
Sbjct: 67 SDKGHTSPPDDTDQRMVPENSPEIYRRLESVPSPGVGH 93

The following BLAST results are available for this feature:

BLAST of CsGy4G021180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ54	3.9e-04	34.69	Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1	[more]

BLAST of CsGy4G021180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55050.1	2.45e-54	100.00	hypothetical protein Csa_012928 [Cucumis sativus]	[more]
KAA0066754.1	3.92e-51	94.44	hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790...	[more]
KAG6607932.1	3.23e-13	52.70	hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori...	[more]
DAD48182.1	2.26e-06	44.29	TPA_asm: hypothetical protein HUJ06_018119 [Nelumbo nucifera]	[more]
KAF8413711.1	1.12e-05	40.54	hypothetical protein HHK36_001703 [Tetracentron sinense]	[more]

BLAST of CsGy4G021180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZH3	1.18e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1	[more]
A0A5A7VHE0	1.90e-51	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6N2L486	6.01e-07	40.96	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113295 PE=4 SV=...	[more]
A0A5B7APD8	2.30e-06	37.08	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_027968...	[more]
A0A2G3A7S5	3.62e-05	42.17	uncharacterized protein LOC107861156 OS=Capsicum annuum OX=4072 GN=LOC107861156 ...	[more]

BLAST of CsGy4G021180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16950.1	2.8e-05	34.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G021180.2	CsGy4G021180.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007154	cell communication
biological_process	GO:0051716	cellular response to stimulus
biological_process	GO:1901698	response to nitrogen compound
biological_process	GO:0042594	response to starvation