Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG
mRNA sequence
ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG
Coding sequence (CDS)
ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG
Protein sequence
MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ*
Homology
BLAST of CsGy4G020550 vs. NCBI nr
Match:
KAE8649800.1 (hypothetical protein Csa_012219 [Cucumis sativus])
HSP 1 Score: 328 bits (840), Expect = 3.48e-113
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGG 60
MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGG
Sbjct: 1 MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGG 60
Query: 61 TQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQK 120
TQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQK
Sbjct: 61 TQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQK 120
Query: 121 TTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ 162
TTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ
Sbjct: 121 TTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ 162
BLAST of CsGy4G020550 vs. NCBI nr
Match:
KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 194 bits (492), Expect = 2.14e-55
Identity = 109/150 (72.67%), Postives = 116/150 (77.33%), Query Frame = 0
Query: 16 CT--SNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYP 75
CT S+ HRN G E+SGRFV GV SRGNFKSQY+GSSFSKSGS GG QR S SSHPI
Sbjct: 241 CTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGAQRSSGSSHPISS 300
Query: 76 TRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTT 135
T SH+ +SD+VVS SSK SVCYN GQPGHYRRD LIP NTI KTTSQT SQQP+ T
Sbjct: 301 TGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRIT 360
Query: 136 RTRGEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
T GEGSSG KQKG VG SRQE KVFAMTQ
Sbjct: 361 ITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 390
BLAST of CsGy4G020550 vs. NCBI nr
Match:
KAA0042144.1 (putative polyprotein, identical [Cucumis melo var. makuwa])
HSP 1 Score: 184 bits (468), Expect = 1.02e-53
Identity = 103/145 (71.03%), Postives = 111/145 (76.55%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S H+N G E+SGRFVLGV SRGNFKSQYSGSSFSKSGSGG QR S SSHPI
Sbjct: 210 SSLMHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGG 269
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SH+ +SD+VVS S K SVCYN GQP HYRR+ LIP NTI KTTSQT SQQP+TTRT
Sbjct: 270 SHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQPRTTRTS 329
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAM 160
GEGSSG KQKG G SRQE KVFAM
Sbjct: 330 GEGSSGGKQKGPAGRSRQEGKVFAM 354
BLAST of CsGy4G020550 vs. NCBI nr
Match:
KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 175 bits (443), Expect = 2.03e-47
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S+ HRN G E+SGRFV V SRG+FKSQYSGSSFSKS SGGG QR S SSH I T
Sbjct: 222 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 281
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SHV +S++VVS S K SVCYN Q GHYRRD LIP +NTI KTTSQT QQ +TT T
Sbjct: 282 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 341
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 342 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 368
BLAST of CsGy4G020550 vs. NCBI nr
Match:
TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])
HSP 1 Score: 175 bits (443), Expect = 2.37e-47
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S+ HRN G E+SGRFV V SRG+FKSQYSGSSFSKS SGGG QR S SSH I T
Sbjct: 256 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 315
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SHV +S++VVS S K SVCYN Q GHYRRD LIP +NTI KTTSQT QQ +TT T
Sbjct: 316 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 375
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 376 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 402
BLAST of CsGy4G020550 vs. ExPASy TrEMBL
Match:
A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)
HSP 1 Score: 194 bits (492), Expect = 1.03e-55
Identity = 109/150 (72.67%), Postives = 116/150 (77.33%), Query Frame = 0
Query: 16 CT--SNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYP 75
CT S+ HRN G E+SGRFV GV SRGNFKSQY+GSSFSKSGS GG QR S SSHPI
Sbjct: 241 CTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFSKSGSSGGAQRSSGSSHPISS 300
Query: 76 TRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTT 135
T SH+ +SD+VVS SSK SVCYN GQPGHYRRD LIP NTI KTTSQT SQQP+ T
Sbjct: 301 TGGSHIARSDRVVSESSKSSVCYNCGQPGHYRRDCPHLIPGGNTILKTTSQTVSQQPRIT 360
Query: 136 RTRGEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
T GEGSSG KQKG VG SRQE KVFAMTQ
Sbjct: 361 ITSGEGSSGGKQKGPVGRSRQEGKVFAMTQ 390
BLAST of CsGy4G020550 vs. ExPASy TrEMBL
Match:
A0A5A7TFE2 (Putative polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006330 PE=4 SV=1)
HSP 1 Score: 184 bits (468), Expect = 4.92e-54
Identity = 103/145 (71.03%), Postives = 111/145 (76.55%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S H+N G E+SGRFVLGV SRGNFKSQYSGSSFSKSGSGG QR S SSHPI
Sbjct: 210 SSLMHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGG 269
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SH+ +SD+VVS S K SVCYN GQP HYRR+ LIP NTI KTTSQT SQQP+TTRT
Sbjct: 270 SHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQPRTTRTS 329
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAM 160
GEGSSG KQKG G SRQE KVFAM
Sbjct: 330 GEGSSGGKQKGPAGRSRQEGKVFAM 354
BLAST of CsGy4G020550 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 175 bits (443), Expect = 9.82e-48
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S+ HRN G E+SGRFV V SRG+FKSQYSGSSFSKS SGGG QR S SSH I T
Sbjct: 222 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 281
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SHV +S++VVS S K SVCYN Q GHYRRD LIP +NTI KTTSQT QQ +TT T
Sbjct: 282 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 341
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 342 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 368
BLAST of CsGy4G020550 vs. ExPASy TrEMBL
Match:
A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)
HSP 1 Score: 175 bits (443), Expect = 1.15e-47
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S+ HRN G E+SGRFV V SRG+FKSQYSGSSFSKS SGGG QR S SSH I T
Sbjct: 256 SSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFSKSRSGGGAQRSSDSSHTISSTGG 315
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SHV +S++VVS S K SVCYN Q GHYRRD LIP +NTI KTTSQT QQ +TT T
Sbjct: 316 SHVARSNRVVSESGKSSVCYNCCQLGHYRRDCPHLIPGSNTILKTTSQTVIQQLRTTGTS 375
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
GEGSSG KQKGLVG SRQE KVFAMTQ
Sbjct: 376 GEGSSGGKQKGLVGRSRQEGKVFAMTQ 402
BLAST of CsGy4G020550 vs. ExPASy TrEMBL
Match:
A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)
HSP 1 Score: 168 bits (426), Expect = 1.02e-46
Identity = 94/147 (63.95%), Postives = 106/147 (72.11%), Query Frame = 0
Query: 17 TSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRA 76
+S+ HRN G +SG FV GV ++GNFKSQ+SGSSFSKS SGGG R S SSHP++
Sbjct: 83 SSSIHRNRPGKGRSGSFVPGVSNKGNFKSQFSGSSFSKSRSGGGVHRSSGSSHPMFSAGG 142
Query: 77 SHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTR 136
SHV +SD+ + S K SVCYN GQPGHYRRD LI E NT+ KT SQT SQQ KTTRT
Sbjct: 143 SHVARSDRAILESGKSSVCYNCGQPGHYRRDCPQLILEGNTMHKTISQTISQQLKTTRTS 202
Query: 137 GEGSSGVKQKGLVG-SRQEWKVFAMTQ 162
GEGSSG KQKG VG S QE KV AM Q
Sbjct: 203 GEGSSGGKQKGPVGCSHQEGKVLAMKQ 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAE8649800.1 | 3.48e-113 | 100.00 | hypothetical protein Csa_012219 [Cucumis sativus] | [more] |
KAA0060484.1 | 2.14e-55 | 72.67 | Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag... | [more] |
KAA0042144.1 | 1.02e-53 | 71.03 | putative polyprotein, identical [Cucumis melo var. makuwa] | [more] |
KAA0036813.1 | 2.03e-47 | 69.39 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
TYJ95881.1 | 2.37e-47 | 69.39 | retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UZM6 | 1.03e-55 | 72.67 | Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7TFE2 | 4.92e-54 | 71.03 | Putative polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7T1M0 | 9.82e-48 | 69.39 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5D3BB91 | 1.15e-47 | 69.39 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5A7TG44 | 1.02e-46 | 63.95 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
Match Name | E-value | Identity | Description | |