CsGy4G019405 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G019405
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 25800188 .. 25800420 (-)
RNA-Seq ExpressionCsGy4G019405
SyntenyCsGy4G019405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGACGACAAAAGGGATGCAGGGAAATGCACCACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGCAAAACCCTGGCAAAGAAACTTGCTATAACTACGGAGATAAGGAGCCAAGCATTATGTAATGAAATATTTTGACATTGGATCTTTTTCATGCAGTTGTTTCCAAGTGCTTAAATTCCGTCTCAGTTAACTCTAATGAAATGATATAA

mRNA sequence

ATGTCTTCGACGACAAAAGGGATGCAGGGAAATGCACCACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGCAAAACCCTGGCAAAGAAACTTGCTATAACTACGGAGATAAGGAGCCAAGCATTATTTGTTTCCAAGTGCTTAAATTCCGTCTCAGTTAACTCTAATGAAATGATATAA

Coding sequence (CDS)

ATGTCTTCGACGACAAAAGGGATGCAGGGAAATGCACCACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCGCAAAACCCTGGCAAAGAAACTTGCTATAACTACGGAGATAAGGAGCCAAGCATTATTTGTTTCCAAGTGCTTAAATTCCGTCTCAGTTAACTCTAATGAAATGATATAA

Protein sequence

MSSTTKGMQGNAPHADGSFMNIACACKTRKTLAKKLAITTEIRSQALFVSKCLNSVSVNSNEMI*
Homology
[Close]
BLAST of CsGy4G019405 vs. NCBI nr
Match: KAE8649706.1 (hypothetical protein Csa_012067 [Cucumis sativus])

HSP 1 Score: 108 bits (271), Expect = 7.43e-29
Identity = 59/78 (75.64%), Postives = 60/78 (76.92%), Query Frame = 0 

Query: 1   MSSTTKGMQGNAPHADGSFMNIACACKTRKTLAKKLAITTEIRSQALF------------ 60
           MSSTTKGMQGNAPHA GSFMNIACACKTRKTLAKK AITTEIRSQAL             
Sbjct: 39  MSSTTKGMQGNAPHAHGSFMNIACACKTRKTLAKKFAITTEIRSQALLCKRNILTLDLFH 98

Query: 61  --VSKCLNSVSVNSNEMI 64
             VSKCLNS+SVN NEMI
Sbjct: 99  AVVSKCLNSISVNYNEMI 116

[Close]
BLAST of CsGy4G019405 vs. NCBI nr
Match: KAE8649710.1 (hypothetical protein Csa_012088, partial [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 9.15e-21
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MSSTTKGMQGNAPHADGSFMNIACACKTRKTLAKKLAITTEIRSQAL 47
           MSSTTKGMQGNAPHA GSFMNIACACKTRKTLAKK AITTEIRSQ L
Sbjct: 98  MSSTTKGMQGNAPHAHGSFMNIACACKTRKTLAKKFAITTEIRSQTL 144

[Close]
BLAST of CsGy4G019405 vs. NCBI nr
Match: KAE8649755.1 (hypothetical protein Csa_023757, partial [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 6.54e-13
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  MSSTTKGMQGNAPHADGSFMNIACACKTRKTLAKK 35
          MSSTTKGMQGNAPHADGSFMNIACACKTRK   K+
Sbjct: 13 MSSTTKGMQGNAPHADGSFMNIACACKTRKNPGKE 47

[Close]
BLAST of CsGy4G019405 vs. NCBI nr
Match: KAE8649752.1 (hypothetical protein Csa_023768, partial [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.83e-12
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MSSTTKGMQGNAPHADGSFMNIACACKTRK 30
          MSSTTKGMQGNAPHADGSFMNIACACKTRK
Sbjct: 13 MSSTTKGMQGNAPHADGSFMNIACACKTRK 42

[Close]
BLAST of CsGy4G019405 vs. NCBI nr
Match: KAE8649754.1 (hypothetical protein Csa_023747, partial [Cucumis sativus])

HSP 1 Score: 44.3 bits (103), Expect = 3.61e-04
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0 

Query: 1  MSSTTKGMQGNAPHADGSFM 20
          MSSTTKGMQGNAPHADGSFM
Sbjct: 13 MSSTTKGMQGNAPHADGSFM 32

The following BLAST results are available for this feature:
BLAST of CsGy4G019405 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G019405 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649706.17.43e-2975.64hypothetical protein Csa_012067 [Cucumis sativus][more]
KAE8649710.19.15e-2193.62hypothetical protein Csa_012088, partial [Cucumis sativus][more]
KAE8649755.16.54e-1388.57hypothetical protein Csa_023757, partial [Cucumis sativus][more]
KAE8649752.11.83e-12100.00hypothetical protein Csa_023768, partial [Cucumis sativus][more]
KAE8649754.13.61e-04100.00hypothetical protein Csa_023747, partial [Cucumis sativus][more]
BLAST of CsGy4G019405 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy4G019405 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G019405.1CsGy4G019405.1mRNA