CsGy4G018193 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G018193
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 23612796 .. 23613089 (-)
RNA-Seq ExpressionCsGy4G018193
SyntenyCsGy4G018193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCACCCTTATCCTCCTCCCTCCCTCCCACTACTGTCTCCTTTCCACCTATTTCTTCTATCATTGCACCCACCCCTAAGGACGATAATGAAGTTTTGCACAACTCTGTTCCAGTTCCTCATAATTCTGAGAATCAAATTTCTACTAATGTGTATCCTTTAGATACAAGTTCTAATGCAATTTTGCAGGAATATGATGATCCTCCTTCCACTATGGGGATTTATGAAACTTCATCCTCTATGGCTCCTTCTCTTGTTGATGCTCTTCATGCTATAATGCTCATCTTATGA

mRNA sequence

ATGAACCCACCCTTATCCTCCTCCCTCCCTCCCACTACTGTCTCCTTTCCACCTATTTCTTCTATCATTGCACCCACCCCTAAGGACGATAATGAAGTTTTGCACAACTCTGTTCCAGTTCCTCATAATTCTGAGAATCAAATTTCTACTAATGTGTATCCTTTAGATACAAGTTCTAATGCAATTTTGCAGGAATATGATGATCCTCCTTCCACTATGGGGATTTATGAAACTTCATCCTCTATGGCTCCTTCTCTTGTTGATGCTCTTCATGCTATAATGCTCATCTTATGA

Coding sequence (CDS)

ATGAACCCACCCTTATCCTCCTCCCTCCCTCCCACTACTGTCTCCTTTCCACCTATTTCTTCTATCATTGCACCCACCCCTAAGGACGATAATGAAGTTTTGCACAACTCTGTTCCAGTTCCTCATAATTCTGAGAATCAAATTTCTACTAATGTGTATCCTTTAGATACAAGTTCTAATGCAATTTTGCAGGAATATGATGATCCTCCTTCCACTATGGGGATTTATGAAACTTCATCCTCTATGGCTCCTTCTCTTGTTGATGCTCTTCATGCTATAATGCTCATCTTATGA

Protein sequence

MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSNAILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL*
Homology
BLAST of CsGy4G018193 vs. NCBI nr
Match: KGN54718.1 (hypothetical protein Csa_012961 [Cucumis sativus])

HSP 1 Score: 188 bits (478), Expect = 4.55e-60
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60
          MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN
Sbjct: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60

Query: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 97
          AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL
Sbjct: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 97

BLAST of CsGy4G018193 vs. NCBI nr
Match: KAA0032169.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14414.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (315), Expect = 4.47e-33
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 0

Query: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60
          MN P SSS+ PT VS PPISSIIAPTPKD NEVL NS+ +P+NS+N  STNVYPLDT SN
Sbjct: 1  MNTPSSSSITPTIVSLPPISSIIAPTPKDHNEVLPNSILIPNNSKNPNSTNVYPLDTGSN 60

Query: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDA 89
           +LQ++DDPPSTMG Y+TSSSMA SL+D+
Sbjct: 61 EVLQDHDDPPSTMGNYKTSSSMASSLIDS 89

BLAST of CsGy4G018193 vs. NCBI nr
Match: KAA0066108.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >TYK15147.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 1.90e-04
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 59  SNAILQEYDDPPSTMGIYETSSSMAPSLVDALHAI 93
           SNA+L+ +DDPPS MG YETSSSMAP  +D  H I
Sbjct: 155 SNAVLRHHDDPPSNMGNYETSSSMAPFPIDVPHVI 189

BLAST of CsGy4G018193 vs. ExPASy TrEMBL
Match: A0A0A0KYW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432470 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 2.20e-60
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60
          MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN
Sbjct: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60

Query: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 97
          AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL
Sbjct: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDALHAIMLIL 97

BLAST of CsGy4G018193 vs. ExPASy TrEMBL
Match: A0A5D3CTU1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00670 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 2.16e-33
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 0

Query: 1  MNPPLSSSLPPTTVSFPPISSIIAPTPKDDNEVLHNSVPVPHNSENQISTNVYPLDTSSN 60
          MN P SSS+ PT VS PPISSIIAPTPKD NEVL NS+ +P+NS+N  STNVYPLDT SN
Sbjct: 1  MNTPSSSSITPTIVSLPPISSIIAPTPKDHNEVLPNSILIPNNSKNPNSTNVYPLDTGSN 60

Query: 61 AILQEYDDPPSTMGIYETSSSMAPSLVDA 89
           +LQ++DDPPSTMG Y+TSSSMA SL+D+
Sbjct: 61 EVLQDHDDPPSTMGNYKTSSSMASSLIDS 89

BLAST of CsGy4G018193 vs. ExPASy TrEMBL
Match: A0A5D3CT89 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00110 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 9.20e-05
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 59  SNAILQEYDDPPSTMGIYETSSSMAPSLVDALHAI 93
           SNA+L+ +DDPPS MG YETSSSMAP  +D  H I
Sbjct: 155 SNAVLRHHDDPPSNMGNYETSSSMAPFPIDVPHVI 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN54718.14.55e-60100.00hypothetical protein Csa_012961 [Cucumis sativus][more]
KAA0032169.14.47e-3371.91putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14414.1 putative m... [more]
KAA0066108.11.90e-0465.71Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa] >... [more]
Match NameE-valueIdentityDescription
A0A0A0KYW32.20e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432470 PE=4 SV=1[more]
A0A5D3CTU12.16e-3371.91Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3CT899.20e-0565.71Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G018193.1CsGy4G018193.1mRNA