CsGy4G017917 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G017917
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 23101158 .. 23101799 (+)
RNA-Seq Expression	CsGy4G017917
Synteny	CsGy4G017917

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAGGAATTTGCATCTCTGCACAGAGAAAAAATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGATTGTAATGTTGAAAATTTCTCTTCTCTATCTCTGTGTTTCTCTTTGCGATATGAAATTATTGATGTAGTTGAAAATTAGGGTTTGAATGAAAGGGGGGAAAGGGAATTGAATTGGAATATTGAAGAGGAATTATTGATG

mRNA sequence

GAAAAAAGGAATTTGCATCTCTGCACAGAGAAAAAATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGATTGTAATGTTGAAAATTTCTCTTCTCTATCTCTGTGTTTCTCTTTGCGATATGAAATTATTGATGTAGTTGAAAATTAGGGTTTGAATGAAAGGGGGGAAAGGGAATTGAATTGGAATATTGAAGAGGAATTATTGATG

Coding sequence (CDS)

ATGGCAGAGCCTCAAACTCGCGAAAATTTAGCCCAAAATCTATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCCCCGCCGCCGTCGATCCAGATCCTGTCGACCCTCCCCTATCACCACCAGCCGTTGCCGTCCTGGAGGATCCGGATTTGATTCGAGAACCTAAACGCCGAAAGCACTGTCCAACGGCTTTGGAGAATCTTGACGAATTGACGTCCGCCTCCAACTCCAGCTTTGCCTTCACCTTCGACACGAAATTCTGCGGATTCTCAGCAGAGATCACTCCGAAATTTGGATCGTTCAACTCAATCGCACCGGAAATGGAGAGGAATCAAAAGAAAGCAGAGAGGGAAGTGAGAGTAGAGGAAGAAGAAAGCGTACATAAAGTTGAAGAAGAAGAAGAAGAAGAAATTGGAATTGCAGATGCGTTGCTAGAAGCAATTAATGAAGAAGAAGAAAGAAATTGA

Protein sequence

MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVRVEEEESVHKVEEEEEEEIGIADALLEAINEEEERN*

Homology

[Close]

BLAST of CsGy4G017917 vs. NCBI nr
Match: KGN54677.1 (hypothetical protein Csa_012626 [Cucumis sativus])

HSP 1 Score: 286 bits (732), Expect = 6.06e-97
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155
           VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN
Sbjct: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155

[Close]

BLAST of CsGy4G017917 vs. NCBI nr
Match: KAA0025819.1 (uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09637.1 uncharacterized protein E5676_scaffold447G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (590), Expect = 1.12e-75
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSP AVDPDPVDPPLSPPAVA L+DPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPLQDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK EREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKEEREVR 120

Query: 121 VEEEESV 127
           VEEEE++
Sbjct: 121 VEEEETM 127

[Close]

BLAST of CsGy4G017917 vs. NCBI nr
Match: KAG6595438.1 (hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027436.1 hypothetical protein SDJN02_11449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 1.06e-54
Identity = 113/173 (65.32%), Postives = 125/173 (72.25%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------------LED 60
           MAEPQTRE  AQN SLS LSRSSF   A D DP D PL+PPAVAV            +ED
Sbjct: 1   MAEPQTRETFAQNPSLSILSRSSF--VAADSDPADHPLAPPAVAVTVTAASDSSDVAIED 60

Query: 61  PDLIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEM 120
           PDL+REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIA E 
Sbjct: 61  PDLLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAHET 120

Query: 121 ERNQKKAEREVRV----------EEEESVHKVE-EEEEEEIGIADALLEAINE 150
           E  +KK + +  V          EEEE +  V+ E++E+EI + DALLEAI E
Sbjct: 121 ETKKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQDEQEIKVTDALLEAIGE 171

[Close]

BLAST of CsGy4G017917 vs. NCBI nr
Match: KAG6604296.1 (hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034454.1 hypothetical protein SDJN02_04183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (440), Expect = 4.30e-52
Identity = 114/176 (64.77%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV----------LEDPD 60
           MAEPQTREN AQN SLSPLSRSSFS  A DPDP +  L P  +AV          +EDPD
Sbjct: 1   MAEPQTRENFAQNPSLSPLSRSSFS--AADPDPGERSLVPTTLAVSAAADFSDVGIEDPD 60

Query: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMER 120
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME 
Sbjct: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMES 120

Query: 121 NQKKAEREVRV------------EEEESVHK------VEEEEEEEIGIADALLEAI 148
             KK ++E R+            E EESV++       EEEEEEE  +ADALLEAI
Sbjct: 121 T-KKEKKEQRLVLDSASKTRGDEEREESVNRGTEEEEEEEEEEEEKEVADALLEAI 173

[Close]

BLAST of CsGy4G017917 vs. NCBI nr
Match: OIT38761.1 (hypothetical protein A4A49_21018 [Nicotiana attenuata])

HSP 1 Score: 84.3 bits (207), Expect = 2.28e-17
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV--------LEDPDLI 60
           M EP+T ++ A N S+        +P  VD  P       P  A          EDPD +
Sbjct: 1   MEEPKTDQSSAANCSIP-------APHTVDDQP-------PQAATESCEEKPDKEDPDSL 60

Query: 61  REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPE--ME 120
           R+PKRRK+CPTAL+  D + SA+N  F+F+FD+KF G S  E+TPKFGSFN + P+    
Sbjct: 61  RQPKRRKNCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKPVSS 120

Query: 121 RNQKKAEREVRVEEEE 125
           ++ K  ERE++ ++EE
Sbjct: 121 KDPKSEERELKEDDEE 122

[Close]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL
Match: A0A0A0L245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 286 bits (732), Expect = 2.93e-97
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120

Query: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155
           VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN
Sbjct: 121 VEEEESVHKVEEEEEEEIGIADALLEAINEEEERN 155

[Close]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL
Match: A0A5D3CCB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00340 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 5.42e-76
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           MAEPQTRENLAQNLSLSPLSRSSFSP AVDPDPVDPPLSPPAVA L+DPDLIREPKRRKH
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAPLQDPDLIREPKRRKH 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKAEREVR 120
           CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKK EREVR
Sbjct: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEMERNQKKEEREVR 120

Query: 121 VEEEESV 127
           VEEEE++
Sbjct: 121 VEEEETM 127

[Close]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL
Match: A0A314LAG3 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21018 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.10e-17
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV--------LEDPDLI 60
           M EP+T ++ A N S+        +P  VD  P       P  A          EDPD +
Sbjct: 1   MEEPKTDQSSAANCSIP-------APHTVDDQP-------PQAATESCEEKPDKEDPDSL 60

Query: 61  REPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPE--ME 120
           R+PKRRK+CPTAL+  D + SA+N  F+F+FD+KF G S  E+TPKFGSFN + P+    
Sbjct: 61  RQPKRRKNCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKPVSS 120

Query: 121 RNQKKAEREVRVEEEE 125
           ++ K  ERE++ ++EE
Sbjct: 121 KDPKSEERELKEDDEE 122

[Close]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL
Match: A0A1S4BGV3 (uncharacterized protein LOC107808130 OS=Nicotiana tabacum OX=4097 GN=LOC107808130 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.06e-17
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 21  RSSFSPAA----VDPDPVDPPLSPPAVAV--------LEDPDLIREPKRRKHCPTALENL 80
           ++  SPAA      PD VD P  PP  A          EDPD +R+PKRRK+CPTAL+  
Sbjct: 5   KADHSPAANCSTPAPDTVDDP--PPQAAAESCEEKPDKEDPDSLRQPKRRKNCPTALDKF 64

Query: 81  DELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAPEM--ERNQKKAEREVRVEEE 124
           D + SA+N  F+F+FD+KF G S  E+TPKFGSFN + P+    ++ K  ERE++ ++E
Sbjct: 65  DSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPKTVSSKDPKSEERELKEDDE 121

[Close]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL
Match: A0A0V0HAK9 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.05e-16
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAVLEDPDLIREPKRRKH 60
           M  P++ +  A+N S    S S+   +  DP P     S      +EDPD++R+PKRRK+
Sbjct: 1   MENPKSDQAPAENCSDPAPSNSN---SGDDPSPPTTAESWEEKPEIEDPDILRQPKRRKN 60

Query: 61  CPTALENLDELTSASNSSFAFTFDTKFCGFSA-EITPKFGSFNSIAP 106
           CP+AL+  D + S SN  F+F+FD+KF G S  E+TPKFGSFN + P
Sbjct: 61  CPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVKP 104

The following BLAST results are available for this feature:

BLAST of CsGy4G017917 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G017917 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54677.1	6.06e-97	100.00	hypothetical protein Csa_012626 [Cucumis sativus]	[more]
KAA0025819.1	1.12e-75	95.28	uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09...	[more]
KAG6595438.1	1.06e-54	65.32	hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604296.1	4.30e-52	64.77	hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sorori...	[more]
OIT38761.1	2.28e-17	41.18	hypothetical protein A4A49_21018 [Nicotiana attenuata]	[more]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245	2.93e-97	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1	[more]
A0A5D3CCB2	5.42e-76	95.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A314LAG3	1.10e-17	41.18	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21018 PE=4 SV=1	[more]
A0A1S4BGV3	5.06e-17	45.38	uncharacterized protein LOC107808130 OS=Nicotiana tabacum OX=4097 GN=LOC10780813...	[more]
A0A0V0HAK9	1.05e-16	43.93	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]

BLAST of CsGy4G017917 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..151
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G017917.1	CsGy4G017917.1	mRNA