CsGy4G016360 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G016360
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 21228601 .. 21228950 (+)
RNA-Seq ExpressionCsGy4G016360
SyntenyCsGy4G016360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGAGTATTATTCTCTATCATTGAACTATTGTAATTTCGTAATGTAATTTTTTGTTTGTTTGTTATTTTAAAGTTAAAGAAGTATTTATTAAATGCTAATTCTTTGTCACATGGCAGTGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

mRNA sequence

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Coding sequence (CDS)

ATGGTAACTCAGAAGCTCTTTATTGTTTCCATGCTGGTCGCGGTCACATTTTCCTGTTTTGCTTCATCGATGGAGGGAGATGATCTATGGAATTGTGTTATACCATGTTCGAACAACAACGGAGATATTTTGTGTAATACTGCATGCATCGAACAAGACGAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATTTCTGATATGAAAGTTTGTTGTTGCAACAATGGACGATGA

Protein sequence

MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCNNGR*
Homology
BLAST of CsGy4G016360 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 169 bits (429), Expect = 3.47e-53
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 78
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

BLAST of CsGy4G016360 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 2.46e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of CsGy4G016360 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 2.46e-14
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          M ++KLF V  +V + F  FASS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60

Query: 61 PKLPGISDMKVCCCNN 76
          PKLP +++ K CCCNN
Sbjct: 61 PKLPSVTNEKDCCCNN 75

BLAST of CsGy4G016360 vs. NCBI nr
Match: KAA0043464.1 (hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 9.98e-14
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          M T+KL +V + + V  +CF +  EG  LWNC+ PCS     + C   C   ++G G C+
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLPGISDMKVCCCNN 76
          PK P +SD  VCCC  
Sbjct: 61 PKRP-VSDEYVCCCTG 75

BLAST of CsGy4G016360 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 5.75e-13
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  VS+++ +  +C  S+ +GD L  NCV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of CsGy4G016360 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 1.68e-53
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDMKVCCCNNGR 78
          PKLPGISDMKVCCCNNGR
Sbjct: 61 PKLPGISDMKVCCCNNGR 78

BLAST of CsGy4G016360 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.19e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of CsGy4G016360 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.83e-14
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60
          M T+KL +V + + V  +CF +  EG  LWNC+ PCS     + C   C   ++G G C+
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLPGISDMKVCCCNN 76
          PK P +SD  VCCC  
Sbjct: 61 PKRP-VSDEYVCCCTG 75

BLAST of CsGy4G016360 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.78e-13
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60
          M TQKL  +S++V V F C  S+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDMKVCCCNN 76
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

BLAST of CsGy4G016360 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.86e-07
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0

Query: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75
          +CV PCS+   D  C   CI ++ GAGFC PKLP  S  K CCCN
Sbjct: 11 HCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN54497.13.47e-53100.00hypothetical protein Csa_012842 [Cucumis sativus][more]
KGN61228.12.46e-1450.00hypothetical protein Csa_006463 [Cucumis sativus][more]
KAG6586428.12.46e-1444.74hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0043464.19.98e-1440.79hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa][more]
KAE8651697.15.75e-1348.68hypothetical protein Csa_006343 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0L1R81.68e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A0A0LHG91.19e-1450.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A5A7TJH14.83e-1440.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LJG52.78e-1348.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF52.86e-0753.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G016360.1CsGy4G016360.1mRNA