CsGy4G016303 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G016303
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transcription elongation factor B polypeptide 3 isoform X2
Location	Gy14Chr4: 21142889 .. 21143250 (+)
RNA-Seq Expression	CsGy4G016303
Synteny	CsGy4G016303

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAATTCTTGGTTGGGTTTGTGGGGGAAGGCTAGGAAGATTTGCATAGAAGAAAGAAATGGAAGGATATTTGGTACACTGGAGCTGAATTTCAGCACCTCAGCTTGTGTTAGGGATTGTTTAGTGGGCGCTGCAGACATGAAGAATTCTATGGTCTTTTGGCAAAGAAGGTTAGAGTTTGCCATTATTTTTGTTGGAATCCTTCCTTTACTTTCTCAATATTTTCCTTGTTAGAATCTTAGAATGTTTTTGGAAAGATTATGGGAATATTTTCCTTATTTCCTATATCTTTTCCTTTTTTATTCTCTTGTTATTCTCTATTTATTCTCCCTTGTACCTATTGTATTATTCATTAG

mRNA sequence

ATGGGAAGAAATTCTTGGTTGGGTTTGTGGGGGAAGGCTAGGAAGATTTGCATAGAAGAAAGAAATGGAAGGATATTTGGTACACTGGAGCTGAATTTCAGCACCTCAGCTTGTGTTAGGGATTGTTTAGTGGGCGCTGCAGACATGAAGAATTCTATGGTCTTTTGGCAAAGAAGGTTAGAGTTTGCCATTATTTTTGTTGGAATCCTTCCTTTACTTTCTCAATATTTTCCTTGTTAGAATCTTAGAATGTTTTTGGAAAGATTATGGGAATATTTTCCTTATTTCCTATATCTTTTCCTTTTTTATTCTCTTGTTATTCTCTATTTATTCTCCCTTGTACCTATTGTATTATTCATTAG

Coding sequence (CDS)

ATGGGAAGAAATTCTTGGTTGGGTTTGTGGGGGAAGGCTAGGAAGATTTGCATAGAAGAAAGAAATGGAAGGATATTTGGTACACTGGAGCTGAATTTCAGCACCTCAGCTTGTGTTAGGGATTGTTTAGTGGGCGCTGCAGACATGAAGAATTCTATGGTCTTTTGGCAAAGAAGGTTAGAGTTTGCCATTATTTTTGTTGGAATCCTTCCTTTACTTTCTCAATATTTTCCTTGTTAG

Protein sequence

MGRNSWLGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAADMKNSMVFWQRRLEFAIIFVGILPLLSQYFPC*

Homology

[Close]

BLAST of CsGy4G016303 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 6.35e-23
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 7  LGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAADMKNSMVFWQRRLEFAIIF 66
          +G   KARKI IEERNGRIFG LEL+F TSA VRDCLVGAA   NSMVFWQRRLEFAIIF
Sbjct: 13 VGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVFWQRRLEFAIIF 72

Query: 67 VGIL 70
            +L
Sbjct: 73 FQVL 76

[Close]

BLAST of CsGy4G016303 vs. NCBI nr
Match: KAA0054521.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.14e-11
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 2   GRNSWLGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAADMKNSMVFWQRR 59
           GR+S  G     RKICIEERNG     LEL   TSA VRDCLV AA++ N +VFW+RR
Sbjct: 132 GRSSECG-----RKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNPLVFWRRR 184

[Close]

BLAST of CsGy4G016303 vs. NCBI nr
Match: KAA0054681.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 3.20e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 7  LGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAA 47
          +GL GK RKI IEERNGR FG +EL+F TSA VRDCL  AA
Sbjct: 13 VGLTGKVRKIYIEERNGRKFGKMELDFGTSAWVRDCLTSAA 53

[Close]

BLAST of CsGy4G016303 vs. NCBI nr
Match: TYK08591.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 3.26e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 7  LGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAA 47
          +GL GK RKI IEERNGR FG +EL+F TSA VRDCL  AA
Sbjct: 13 VGLTGKVRKIYIEERNGRKFGKMELDFGTSAWVRDCLTSAA 53

[Close]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL
Match: A0A5D3CQQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8046G00070 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.08e-23
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 7  LGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAADMKNSMVFWQRRLEFAIIF 66
          +G   KARKI IEERNGRIFG LEL+F TSA VRDCLVGAA   NSMVFWQRRLEFAIIF
Sbjct: 13 VGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVFWQRRLEFAIIF 72

Query: 67 VGIL 70
            +L
Sbjct: 73 FQVL 76

[Close]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL
Match: A0A5A7ULV4 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003030 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.52e-11
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 2   GRNSWLGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAADMKNSMVFWQRR 59
           GR+S  G     RKICIEERNG     LEL   TSA VRDCLV AA++ N +VFW+RR
Sbjct: 132 GRSSECG-----RKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNPLVFWRRR 184

[Close]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL
Match: A0A0A0KGZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.02e-09
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 13  ARKICIEERNGRIFGTLELNFSTSACVRDCLVGAADMKNSMVFWQRR 59
            RKICIEE NG  FG LEL    SA V DCLV AA++ N + FW RR
Sbjct: 131 GRKICIEEGNGERFGKLELELGASAWVIDCLVAAAELSNPLGFWWRR 177

[Close]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL
Match: A0A5A7UMB2 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005030 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.55e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 7  LGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAA 47
          +GL GK RKI IEERNGR FG +EL+F TSA VRDCL  AA
Sbjct: 13 VGLTGKVRKIYIEERNGRKFGKMELDFGTSAWVRDCLTSAA 53

[Close]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL
Match: A0A5D3C9P5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00120 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.58e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 7  LGLWGKARKICIEERNGRIFGTLELNFSTSACVRDCLVGAA 47
          +GL GK RKI IEERNGR FG +EL+F TSA VRDCL  AA
Sbjct: 13 VGLTGKVRKIYIEERNGRKFGKMELDFGTSAWVRDCLTSAA 53

The following BLAST results are available for this feature:

BLAST of CsGy4G016303 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G016303 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14183.1	6.35e-23	76.56	hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]	[more]
KAA0054521.1	3.14e-11	58.62	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]
KAA0054681.1	3.20e-08	70.73	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]
TYK08591.1	3.26e-08	70.73	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQQ0	3.08e-23	76.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7ULV4	1.52e-11	58.62	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A0A0KGZ5	2.02e-09	59.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169320 PE=4 SV=1	[more]
A0A5A7UMB2	1.55e-08	70.73	Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C9P5	1.58e-08	70.73	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CsGy4G016303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G016303.1	CsGy4G016303.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding