CsGy4G015870 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G015870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr4: 20650399 .. 20651135 (+)
RNA-Seq Expression	CsGy4G015870
Synteny	CsGy4G015870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCATTTAAATTCCACAAAACTTCCCATACTTTTAATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCAGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGAGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAGAAGTGGATGGATGAAGGTAATTGGCAATTGGGATCAATGAACTCATCAATTATTAAATGCATTTTTCTCTTTTTCTAATTTATTGTCAAGCGATGTTTATTATGTAGGCTTATTTTGAAAAGAAAGTTTTAATCAAAGTAGTTAAAAGATGGATGGA

mRNA sequence

AACCCATTTAAATTCCACAAAACTTCCCATACTTTTAATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCAGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGAGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAGAAGTGGATGGATGAAGGTAATTGGCAATTGGGATCAATGAACTCATCAATTATTAAATGCATTTTTCTCTTTTTCTAATTTATTGTCAAGCGATGTTTATTATGTAGGCTTATTTTGAAAAGAAAGTTTTAATCAAAGTAGTTAAAAGATGGATGGA

Coding sequence (CDS)

ATGTCCATTTCTTCACAAACTATATCCCCAAATACCCACCACACCCCCACCAAGTATGTTCAAGGTCCACCGCCACCAGCATTTCCAGCCCACACGACTCTCGACAACAACATGGTGATCCTCTTAGCGGCTCTGCTCTATGCCCTCGTCGGCGCACTCGTCATGAACTCAATTCTCCGCTGCATATGGCGGCGGTGGTGGAGCGCCGCCGCAGCAAGAGTCGAGAGGCAGGAATTGGAAGAGATTCCGGTGGCGGTTTACGAAGGGGAAGGGAGAATGAAAATCAGAGGTACGGAATGTGCGATTTGTTTAGGTGAATTCGAAAGTGGTGAGGGTTTGAGGATTATGCCCAAATGTAACCATGGATTTCATGTTCACTGTATTGATGCTTGGTTAGTTTCCCATTCCTCTTGCCCTAATTGTCGCCATAGTCTGCCAGTGAAGACGGTAGCGGATGGTGGCAGTGGCGGAGTTGGTGAGGTGCGGAGGGCGGGGAATGATGGGTCGGATGATATAATTATAATACTGATCGCAGCCATTTAG

Protein sequence

MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI*

Homology

[Close]

BLAST of CsGy4G015870 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 35  DNNMVILLAALLYALVGALVMNSILRCIWRRWW----SAAA------ARVERQELEEIPV 94
           D NMVI+LAALL AL+ AL +NSILRC  R  +    SAAA      A ++++EL++ PV
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPV 90

Query: 95  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 146
           A Y G G +KI  TECAICLGEF  GE +R++P CNH FH+ CID WLVSHSSCPNCRHS
Sbjct: 91  AEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHS 150

[Close]

BLAST of CsGy4G015870 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-29
Identity = 72/143 (50.35%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 23  PPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRC---IWRRWWS----------- 82
           P P      T  D NMVI+LAALL AL+ AL +NS LRC   I RR+ S           
Sbjct: 18  PKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNAN 77

Query: 83  ------AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHG 142
                 AAA  +++Q L++IPV +Y G G + ++ TEC ICLG+FE GE +R++PKCNHG
Sbjct: 78  ANLGRLAAATGLKKQALKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHG 137

Query: 143 FHVHCIDAWLVSHSSCPNCRHSL 146
           FHV CID WL+S SSCP CR SL
Sbjct: 138 FHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of CsGy4G015870 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.0e-27
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 33  TLDNNMVILLAALLYALVGALVMNSILRCI---WRRWW---------SAAAARVERQELE 92
           ++D +MVI+LAALL AL+ AL +NS+LRC+    RR+          +  A  ++++ L+
Sbjct: 36  SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALK 95

Query: 93  EIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPN 152
            IPV  Y  E  +K++ TEC ICLG+F  GE +R++PKCNHGFHV CID WL+SHSSCP 
Sbjct: 96  VIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPT 155

Query: 153 CRHS-LPVKTVADGGSGG 158
           CR S L  +T A+G   G
Sbjct: 156 CRQSLLEHQTPANGSRRG 171

[Close]

BLAST of CsGy4G015870 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.2e-22
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 24  PPPAFPAHT-TLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSA------------- 83
           P PA    T  L++++V++LAALL AL+  L + ++ RC+W R  +A             
Sbjct: 15  PSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSP 74

Query: 84  ----AAAR--VERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGF 143
               AAA   ++++ L+ +P   +  E     +  ECAICL EF +G+ LR++P+C HGF
Sbjct: 75  QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGF 134

Query: 144 HVHCIDAWLVSHSSCPNCRHSLPV 148
           HV CID WL SHSSCP+CR  L V
Sbjct: 135 HVACIDTWLGSHSSCPSCRQILVV 158

[Close]

BLAST of CsGy4G015870 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.1e-21
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 14  HTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRW------- 73
           H   +     P P       L  N+++LL+ L+  ++  L ++ I+RC +RR        
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 74  --------WSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPK 133
                    S++   ++++ L   PV  Y  E  +   G EC ICL +F SGE LR++PK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 134 CNHGFHVHCIDAWLVSHSSCPNCRHSL 146
           CNHGFHV CID WL  H +CP CRH L
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]

BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_011653722.1 (RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus] >KGN54449.1 hypothetical protein Csa_012932 [Cucumis sativus])

HSP 1 Score: 368 bits (944), Expect = 1.88e-128
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR 60
           MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR
Sbjct: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR 60

Query: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120
           CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN
Sbjct: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120

Query: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180
           HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Sbjct: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180

[Close]

BLAST of CsGy4G015870 vs. NCBI nr
Match: KAA0025403.1 (RING-H2 finger protein ATL74 [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 7.11e-88
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 25  PPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LAALLYAL+GALV+NSI+RC+WRRWW AAA RVERQELEEIPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWRAAA-RVERQELEEIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPRCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 180
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]

BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_008463261.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo] >TYK09770.1 RING-H2 finger protein ATL74 [Cucumis melo var. makuwa])

HSP 1 Score: 264 bits (675), Expect = 1.43e-87
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 25  PPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LAALLYAL+GALV+NSI+RC+WRRWWSAAA RVERQELE IPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWSAAA-RVERQELEAIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 180
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]

BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_031739744.1 (RING-H2 finger protein ATL74 isoform X2 [Cucumis sativus])

HSP 1 Score: 192 bits (487), Expect = 5.46e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR 60
          MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR
Sbjct: 1  MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR 60

Query: 61 CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIR 96
          CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIR
Sbjct: 61 CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIR 96

[Close]

BLAST of CsGy4G015870 vs. NCBI nr
Match: XP_022144089.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 186 bits (473), Expect = 8.95e-57
Identity = 106/168 (63.10%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 23  PPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWW------SAAAARVER 82
           P PP+  +   LD N+VI+LAALL ALVGAL +NSILRC+ RR W      SAA A V+R
Sbjct: 13  PSPPSNTSEKNLDFNVVIVLAALLCALVGALAVNSILRCVARRRWGELSRESAALAGVKR 72

Query: 83  Q-ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSH 142
           + ELEEIPVAV+ G    +IRGTECAICLGEFE G+ LRI+P C+HGFHV+CID W VSH
Sbjct: 73  RGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSH 132

Query: 143 SSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDI---IIILIAAI 180
           SSCPNCRHSL  KT  DGG G   EVRR  N  S  +   IIILIAAI
Sbjct: 133 SSCPNCRHSLLQKTAEDGGGG---EVRRPENPDSGQLPGDIIILIAAI 177

[Close]

BLAST of CsGy4G015870 vs. ExPASy TrEMBL
Match: A0A0A0L057 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 PE=4 SV=1)

HSP 1 Score: 368 bits (944), Expect = 9.12e-129
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR 60
           MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR
Sbjct: 1   MSISSQTISPNTHHTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILR 60

Query: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120
           CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN
Sbjct: 61  CIWRRWWSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCN 120

Query: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180
           HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI
Sbjct: 121 HGFHVHCIDAWLVSHSSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDIIIILIAAI 180

[Close]

BLAST of CsGy4G015870 vs. ExPASy TrEMBL
Match: A0A5A7SL64 (RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00400 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 3.44e-88
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 25  PPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LAALLYAL+GALV+NSI+RC+WRRWW AAA RVERQELEEIPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWRAAA-RVERQELEEIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPRCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 180
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]

BLAST of CsGy4G015870 vs. ExPASy TrEMBL
Match: A0A5D3CEJ5 (RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00540 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 6.94e-88
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 25  PPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LAALLYAL+GALV+NSI+RC+WRRWWSAAA RVERQELE IPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWSAAA-RVERQELEAIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 180
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]

BLAST of CsGy4G015870 vs. ExPASy TrEMBL
Match: A0A1S3CKD5 (RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 6.94e-88
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 25  PPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSAAAARVERQELEEIPV 84
           PP FPA T L NNMVI LAALLYAL+GALV+NSI+RC+WRRWWSAAA RVERQELE IPV
Sbjct: 12  PPPFPAETNLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWSAAA-RVERQELEAIPV 71

Query: 85  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 144
           AV+EGEGRM++RGTECAICLGEFESGE LRI+P+CNHGFHVHCIDAWLVSHSSCPNCRHS
Sbjct: 72  AVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGFHVHCIDAWLVSHSSCPNCRHS 131

Query: 145 LPVKTVADGGSGGVGEVRRAGNDG------SDDIIIILIAAI 180
           +P+KTV DGGSGG+ E+RR GN        SDDIIIILIAAI
Sbjct: 132 VPLKTVGDGGSGGISELRRPGNHRTHTGQLSDDIIIILIAAI 172

[Close]

BLAST of CsGy4G015870 vs. ExPASy TrEMBL
Match: A0A6J1CR99 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111013867 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 4.33e-57
Identity = 106/168 (63.10%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 23  PPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRWW------SAAAARVER 82
           P PP+  +   LD N+VI+LAALL ALVGAL +NSILRC+ RR W      SAA A V+R
Sbjct: 13  PSPPSNTSEKNLDFNVVIVLAALLCALVGALAVNSILRCVARRRWGELSRESAALAGVKR 72

Query: 83  Q-ELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSH 142
           + ELEEIPVAV+ G    +IRGTECAICLGEFE G+ LRI+P C+HGFHV+CID W VSH
Sbjct: 73  RGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWFVSH 132

Query: 143 SSCPNCRHSLPVKTVADGGSGGVGEVRRAGNDGSDDI---IIILIAAI 180
           SSCPNCRHSL  KT  DGG G   EVRR  N  S  +   IIILIAAI
Sbjct: 133 SSCPNCRHSLLQKTAEDGGGG---EVRRPENPDSGQLPGDIIILIAAI 177

[Close]

BLAST of CsGy4G015870 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 8.1e-33
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 35  DNNMVILLAALLYALVGALVMNSILRCIWRRWW----SAAA------ARVERQELEEIPV 94
           D NMVI+LAALL AL+ AL +NSILRC  R  +    SAAA      A ++++EL++ PV
Sbjct: 31  DANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPV 90

Query: 95  AVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHS 146
           A Y G G +KI  TECAICLGEF  GE +R++P CNH FH+ CID WLVSHSSCPNCRHS
Sbjct: 91  AEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHS 150

[Close]

BLAST of CsGy4G015870 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-30
Identity = 72/143 (50.35%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 23  PPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRC---IWRRWWS----------- 82
           P P      T  D NMVI+LAALL AL+ AL +NS LRC   I RR+ S           
Sbjct: 18  PKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNAN 77

Query: 83  ------AAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHG 142
                 AAA  +++Q L++IPV +Y G G + ++ TEC ICLG+FE GE +R++PKCNHG
Sbjct: 78  ANLGRLAAATGLKKQALKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHG 137

Query: 143 FHVHCIDAWLVSHSSCPNCRHSL 146
           FHV CID WL+S SSCP CR SL
Sbjct: 138 FHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of CsGy4G015870 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-28
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 33  TLDNNMVILLAALLYALVGALVMNSILRCI---WRRWW---------SAAAARVERQELE 92
           ++D +MVI+LAALL AL+ AL +NS+LRC+    RR+          +  A  ++++ L+
Sbjct: 36  SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALK 95

Query: 93  EIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPN 152
            IPV  Y  E  +K++ TEC ICLG+F  GE +R++PKCNHGFHV CID WL+SHSSCP 
Sbjct: 96  VIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPT 155

Query: 153 CRHS-LPVKTVADGGSGG 158
           CR S L  +T A+G   G
Sbjct: 156 CRQSLLEHQTPANGSRRG 171

[Close]

BLAST of CsGy4G015870 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-23
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 24  PPPAFPAHT-TLDNNMVILLAALLYALVGALVMNSILRCIWRRWWSA------------- 83
           P PA    T  L++++V++LAALL AL+  L + ++ RC+W R  +A             
Sbjct: 15  PSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSP 74

Query: 84  ----AAAR--VERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPKCNHGF 143
               AAA   ++++ L+ +P   +  E     +  ECAICL EF +G+ LR++P+C HGF
Sbjct: 75  QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGF 134

Query: 144 HVHCIDAWLVSHSSCPNCRHSLPV 148
           HV CID WL SHSSCP+CR  L V
Sbjct: 135 HVACIDTWLGSHSSCPSCRQILVV 158

[Close]

BLAST of CsGy4G015870 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 6.5e-22
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 14  HTPTKYVQGPPPPAFPAHTTLDNNMVILLAALLYALVGALVMNSILRCIWRRW------- 73
           H   +     P P       L  N+++LL+ L+  ++  L ++ I+RC +RR        
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 74  --------WSAAAARVERQELEEIPVAVYEGEGRMKIRGTECAICLGEFESGEGLRIMPK 133
                    S++   ++++ L   PV  Y  E  +   G EC ICL +F SGE LR++PK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 134 CNHGFHVHCIDAWLVSHSSCPNCRHSL 146
           CNHGFHV CID WL  H +CP CRH L
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCL 180

The following BLAST results are available for this feature:

BLAST of CsGy4G015870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	1.1e-31	60.33	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	2.4e-29	50.35	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	5.0e-27	48.55	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LM69	8.2e-22	40.28	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q6NML0	9.1e-21	36.05	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]

BLAST of CsGy4G015870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653722.1	1.88e-128	100.00	RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus] >KGN54449.1 hypothetic...	[more]
KAA0025403.1	7.11e-88	80.25	RING-H2 finger protein ATL74 [Cucumis melo var. makuwa]	[more]
XP_008463261.1	1.43e-87	80.25	PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo] >TYK09770.1 RING-H2 finge...	[more]
XP_031739744.1	5.46e-60	100.00	RING-H2 finger protein ATL74 isoform X2 [Cucumis sativus]	[more]
XP_022144089.1	8.95e-57	63.10	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]

BLAST of CsGy4G015870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L057	9.12e-129	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 P...	[more]
A0A5A7SL64	3.44e-88	80.25	RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3CEJ5	6.94e-88	80.25	RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CKD5	6.94e-88	80.25	RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1	[more]
A0A6J1CR99	4.33e-57	63.10	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111013867...	[more]

BLAST of CsGy4G015870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	8.1e-33	60.33	RING/U-box superfamily protein	[more]
AT3G10910.1	1.7e-30	50.35	RING/U-box superfamily protein	[more]
AT5G05280.1	3.5e-28	48.55	RING/U-box superfamily protein	[more]
AT1G20823.1	5.8e-23	40.28	RING/U-box superfamily protein	[more]
AT1G49210.1	6.5e-22	36.05	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 100..141 e-value: 1.9E-6 score: 37.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 99..142 e-value: 3.6E-14 score: 52.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 100..142 score: 11.95817
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 64..148 e-value: 2.5E-21 score: 77.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 30..152
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 30..152
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 99..142 e-value: 7.32992E-18 score: 71.1871
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 99..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G015870.2	CsGy4G015870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane