CsGy4G014600 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G014600
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationGy14Chr4: 19418450 .. 19419887 (+)
RNA-Seq ExpressionCsGy4G014600
SyntenyCsGy4G014600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGGAAACTTCCTTCACATTTCCAACCAACCCTCAATGAAAAGACATTGCAATTTTTAAAAACAAGAAAACGTGTTGTATATTCCCACTTCCTTCCCTCTTTTACAATAATAACAACACACCACATTATATTCATCTACCTCATTCTTCCTTTTAAGTTTCCTTCTTACTTACTTAAGTTTAAAGCTATTTCCTTTTTTTAGGTCTTATTCAGATGGGTTTTGTGAATTTCAAGTGTTTGTTTCTGGGTTTTCTTCTAACCTTTGTTCCTTTTAGAAATGGAGTTATTGTAGTGGAAGGTAGCAGTAGGCCCTTTTCAATTTCCCCAATACTCAAGCTTCAAAAAGGTACACACACAAATATATAACTTATCTACAACTTAATTAAATATAAGTTTTCTCTTGTGATTTATATATAAATTTGATTATGGGTTTTTTTTTTTTTTATGACAGGTTTTAAGGGATATTATGATTCACAAATTTTTGCAACAATGGGAATTGAATGCAAGTGTTGTGATGAGATTGGAGGTAAATGCTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAATATTAATATTAAATCCAATAATCCCTCAGTTCTTTCCTTTAGTTATAGCAAACATCATTATTTTGAATACAAGAGTACTTTAACTTTGGTCATGACTTTGGATACTATTTGGGTGTAGCTCATTCAATCTCTCAACATAAAAAGCTCAATAATGTTTTTAATTAACAAGAAAAAGAAGAAGAAGAAAAGTTTGTTGTCATGTTACAAATTATTATAGTTGGACAACACTAAACTGAACTATTAAATATAGGTGCACAGTTCATGATATTTGTAAGTATTTTCTTGGTATTGTATATCGTTATGTATATTATTTTTGTTAACTTTAACCAATTATACAAATGAGTTAACTTTGGTTAGGCATATATATAACATCAAGACATATAGATAGAAGTTCAAAATTTCAATTTTTTTTTTTTTTAAGTCAAGAGGGTATATTTAATTTACTTCAACTGTATAAAGCATATATGGACAATTATAGTATTTGAATGCCTTGAAATTAGATATGTAACACTTTAAAGGATCGACTATGGGTTCTAGGAGAAGCTCCTCAAACTGTATAGTTGTGTTTATGTTTATGTTATTTGCTCTATTTACTATTTTGATTCGAAAGTTTAACAAAAATTAAAGGAAAAGATAAAAAAAAAAAGATAGATTTTGAAGAATGAAAAAATAGGTGTGTTTTTTCAATGTACAAGTTCATGATTTGTTTTCCTATTTTTAATGAATGCCCTACATTTGGAATGAGGTGGTAGAATGAAAGGTGTTGATGTTGATCAATTGATGCAAAACTAGAATAAATGTAATTTTGTTATACTAATCACTGTTAAGAACAAAAAATATATATATAT

mRNA sequence

GAAAGGAAACTTCCTTCACATTTCCAACCAACCCTCAATGAAAAGACATTGCAATTTTTAAAAACAAGAAAACGTGTTGTATATTCCCACTTCCTTCCCTCTTTTACAATAATAACAACACACCACATTATATTCATCTACCTCATTCTTCCTTTTAAGTTTCCTTCTTACTTACTTAAGTTTAAAGCTATTTCCTTTTTTTAGGTCTTATTCAGATGGGTTTTGTGAATTTCAAGTGTTTGTTTCTGGGTTTTCTTCTAACCTTTGTTCCTTTTAGAAATGGAGTTATTGTAGTGGAAGGTAGCAGTAGGCCCTTTTCAATTTCCCCAATACTCAAGCTTCAAAAAGGTTTTAAGGGATATTATGATTCACAAATTTTTGCAACAATGGGAATTGAATGCAAGTGTTGTGATGAGATTGGAGGTAAATGCTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAATATTAATATTAAATCCAATAATCCCTCAGTTCTTTCCTTTAGTTATAGCAAACATCATTATTTTGAATACAAGAGTACTTTAACTTTGGTCATGACTTTGGATACTATTTGGGTGTAGCTCATTCAATCTCTCAACATAAAAAGCTCAATAATGTTTTTAATTAACAAGAAAAAGAAGAAGAAGAAAAGTTTGTTGTCATGTTACAAATTATTATAGTTGGACAACACTAAACTGAACTATTAAATATAGGTGCACAGTTCATGATATTTGTAAGTATTTTCTTGGTATTGTATATCGTTATGTATATTATTTTTGTTAACTTTAACCAATTATACAAATGAGTTAACTTTGGTTAGGCATATATATAACATCAAGACATATAGATAGAAGTTCAAAATTTCAATTTTTTTTTTTTTTAAGTCAAGAGGGTATATTTAATTTACTTCAACTGTATAAAGCATATATGGACAATTATAGTATTTGAATGCCTTGAAATTAGATATGTAACACTTTAAAGGATCGACTATGGGTTCTAGGAGAAGCTCCTCAAACTGTATAGTTGTGTTTATGTTTATGTTATTTGCTCTATTTACTATTTTGATTCGAAAGTTTAACAAAAATTAAAGGAAAAGATAAAAAAAAAAAGATAGATTTTGAAGAATGAAAAAATAGGTGTGTTTTTTCAATGTACAAGTTCATGATTTGTTTTCCTATTTTTAATGAATGCCCTACATTTGGAATGAGGTGGTAGAATGAAAGGTGTTGATGTTGATCAATTGATGCAAAACTAGAATAAATGTAATTTTGTTATACTAATCACTGTTAAGAACAAAAAATATATATATAT

Coding sequence (CDS)

ATGGGTTTTGTGAATTTCAAGTGTTTGTTTCTGGGTTTTCTTCTAACCTTTGTTCCTTTTAGAAATGGAGTTATTGTAGTGGAAGGTAGCAGTAGGCCCTTTTCAATTTCCCCAATACTCAAGCTTCAAAAAGGTTTTAAGGGATATTATGATTCACAAATTTTTGCAACAATGGGAATTGAATGCAAGTGTTGTGATGAGATTGGAGGTAAATGCTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAATATTAA

Protein sequence

MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY*
Homology
BLAST of CsGy4G014600 vs. NCBI nr
Match: KAE8649554.1 (hypothetical protein Csa_018195 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 3.84e-45
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 0

Query: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60
          MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDEIGGKCSTE 75
          ECKCCDEIGGK   E
Sbjct: 61 ECKCCDEIGGKKKRE 75

BLAST of CsGy4G014600 vs. NCBI nr
Match: KAG6595355.1 (hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 8.82e-22
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 5  NFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKC 64
           +K   +G +L    F NGV VVEGSSR   + P+ KL KG    YDS + AT+GIECKC
Sbjct: 10 EWKWALVGLVLVGACFSNGV-VVEGSSRRSWMLPV-KLHKGGFEAYDSNMIATLGIECKC 69

Query: 65 CD-EIGGKCSTEFTT-SCSNLHCSPWKQY 91
          CD EIGGKCST F   SCSNL CSPWK Y
Sbjct: 70 CDDEIGGKCSTHFAAASCSNLRCSPWKHY 96

BLAST of CsGy4G014600 vs. NCBI nr
Match: TYJ19036.1 (hypothetical protein E1A91_A09G163400v1 [Gossypium mustelinum])

HSP 1 Score: 68.2 bits (165), Expect = 1.06e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 9  LFLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCC 68
          +F GF+L F   +   +  I +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCC
Sbjct: 3  IFQGFVLLFLLVISVSSSQIPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCC 62

Query: 69 DEIGGKCSTEFTTSCSNLHCSPWK 89
          D  GG+CST +T  CS L C PWK
Sbjct: 63 DGSGGECSTTWTQPCSKLKCLPWK 78

BLAST of CsGy4G014600 vs. NCBI nr
Match: KAB2066470.1 (hypothetical protein ES319_A09G162200v1 [Gossypium barbadense] >KAG4184128.1 hypothetical protein ERO13_A09G152400v2 [Gossypium hirsutum] >PPR86503.1 hypothetical protein GOBAR_AA34185 [Gossypium barbadense] >TYH02984.1 hypothetical protein ES288_A09G183900v1 [Gossypium darwinii] >TYI10991.1 hypothetical protein ES332_A09G179700v1 [Gossypium tomentosum])

HSP 1 Score: 67.8 bits (164), Expect = 1.50e-12
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 10 FLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCCD 69
          F GF+L F   +   +  I +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCCD
Sbjct: 4  FQGFVLLFLLVISVSSSQIPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCCD 63

Query: 70 EIGGKCSTEFTTSCSNLHCSPWK 89
            GG+CST +T  CS L C PWK
Sbjct: 64 GSGGECSTTWTQPCSKLKCLPWK 78

BLAST of CsGy4G014600 vs. NCBI nr
Match: KAB2013589.1 (hypothetical protein ES319_D09G166000v1 [Gossypium barbadense] >KAG4130504.1 hypothetical protein ERO13_D09G148100v2 [Gossypium hirsutum] >KAG8483956.1 hypothetical protein CXB51_023535 [Gossypium anomalum] >KJB36657.1 hypothetical protein B456_006G169100 [Gossypium raimondii] >MBA0615811.1 hypothetical protein [Gossypium davidsonii] >MBA0651052.1 hypothetical protein [Gossypium klotzschianum] >TYH54572.1 hypothetical protein ES332_D09G178200v1 [Gossypium tomentosum] >TYI65670.1 hypothetical protein E1A91_D09G171800v1 [Gossypium mustelinum])

HSP 1 Score: 67.4 bits (163), Expect = 2.13e-12
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 10 FLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCCD 69
          F GF+L F   +   +  + +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCCD
Sbjct: 4  FQGFVLLFLLVISVSSSQVPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCCD 63

Query: 70 EIGGKCSTEFTTSCSNLHCSPWK 89
            GG+CST +T  CS L C PWK
Sbjct: 64 GSGGECSTTWTQPCSKLKCLPWK 78

BLAST of CsGy4G014600 vs. ExPASy TrEMBL
Match: A0A0A0KXD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 8.88e-64
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60
          MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91
          ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY
Sbjct: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

BLAST of CsGy4G014600 vs. ExPASy TrEMBL
Match: A0A5D2XZ15 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G163400v1 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.13e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 9  LFLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCC 68
          +F GF+L F   +   +  I +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCC
Sbjct: 3  IFQGFVLLFLLVISVSSSQIPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCC 62

Query: 69 DEIGGKCSTEFTTSCSNLHCSPWK 89
          D  GG+CST +T  CS L C PWK
Sbjct: 63 DGSGGECSTTWTQPCSKLKCLPWK 78

BLAST of CsGy4G014600 vs. ExPASy TrEMBL
Match: A0A2P5W5Y8 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G162200v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.27e-13
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 10 FLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCCD 69
          F GF+L F   +   +  I +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCCD
Sbjct: 4  FQGFVLLFLLVISVSSSQIPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCCD 63

Query: 70 EIGGKCSTEFTTSCSNLHCSPWK 89
            GG+CST +T  CS L C PWK
Sbjct: 64 GSGGECSTTWTQPCSKLKCLPWK 78

BLAST of CsGy4G014600 vs. ExPASy TrEMBL
Match: A0A5D2P3S3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G179700v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.27e-13
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 10 FLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCCD 69
          F GF+L F   +   +  I +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCCD
Sbjct: 4  FQGFVLLFLLVISVSSSQIPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCCD 63

Query: 70 EIGGKCSTEFTTSCSNLHCSPWK 89
            GG+CST +T  CS L C PWK
Sbjct: 64 GSGGECSTTWTQPCSKLKCLPWK 78

BLAST of CsGy4G014600 vs. ExPASy TrEMBL
Match: A0A5D2FAA9 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G183900v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.27e-13
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 10 FLGFLLTF---VPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGIECKCCD 69
          F GF+L F   +   +  I +  ++RPFSI P    Q+ +     S+IFAT+G+ CKCCD
Sbjct: 4  FQGFVLLFLLVISVSSSQIPMVSAARPFSILPD---QQRY-----SKIFATLGVVCKCCD 63

Query: 70 EIGGKCSTEFTTSCSNLHCSPWK 89
            GG+CST +T  CS L C PWK
Sbjct: 64 GSGGECSTTWTQPCSKLKCLPWK 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8649554.13.84e-4596.00hypothetical protein Csa_018195 [Cucumis sativus][more]
KAG6595355.18.82e-2258.43hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYJ19036.11.06e-1244.05hypothetical protein E1A91_A09G163400v1 [Gossypium mustelinum][more]
KAB2066470.11.50e-1244.58hypothetical protein ES319_A09G162200v1 [Gossypium barbadense] >KAG4184128.1 hyp... [more]
KAB2013589.12.13e-1243.37hypothetical protein ES319_D09G166000v1 [Gossypium barbadense] >KAG4130504.1 hyp... [more]
Match NameE-valueIdentityDescription
A0A0A0KXD18.88e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1[more]
A0A5D2XZ155.13e-1344.05Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G163400v1 P... [more]
A0A2P5W5Y87.27e-1344.58Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G162200v1 PE... [more]
A0A5D2P3S37.27e-1344.58Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G179700v1 P... [more]
A0A5D2FAA97.27e-1344.58Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G183900v1 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37078:SF6SUBFAMILY NOT NAMEDcoord: 2..90
NoneNo IPR availablePANTHERPTHR37078FAMILY NOT NAMEDcoord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G014600.1CsGy4G014600.1mRNA