CsGy4G014077 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G014077
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCyclin-dependent protein kinase inhibitor SMR3-like
LocationGy14Chr4: 18983122 .. 18983665 (-)
RNA-Seq ExpressionCsGy4G014077
SyntenyCsGy4G014077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAGAATTCCAAGAAATCTCCCCCGGGCCCCTCCCTTTGCCTGATCATCAGATTTCCTTGATCCGCCTCGACCACATCGACTTCCTTTTCGATTCCTTCTCCTCCATCAGTACTCCACCTAATTCTCTCCCCTCCCCTTCCCGTTCCGTACAAGATCAACCACCTGTTTCCATCTCCGCCGTTGATGATGATGATGAACATAACGACGGTTTCACAACCCCCATCTCTTCACATCATAAGATTCCTGTCATTCCACACTGTCCCCCGGCTCCTTCAAGACCCAAACCCATCTCCTTGTCCAGAACCTTGTCCCCGCGAGCCTCCGGCGTTCGTAGAGGTTTTCTAGTGTATATCTCCGACCAGATCGTTGATTCCATCTTTTCCGATGATTTGCTGCATCAGAAGAGTAAGAAGAAAGCTCGCAAAGACGACGATAATGGCGGTGAATGAAATTTAACTATCTTCTTCTTCTTCTTTTTTATCTTTTTCTTTTTCGATCTCATGACTTGAAGATCCAAAACGAAATCCTAAATCGTAA

mRNA sequence

ATGGCCTCAGAATTCCAAGAAATCTCCCCCGGGCCCCTCCCTTTGCCTGATCATCAGATTTCCTTGATCCGCCTCGACCACATCGACTTCCTTTTCGATTCCTTCTCCTCCATCAGTACTCCACCTAATTCTCTCCCCTCCCCTTCCCGTTCCGTACAAGATCAACCACCTGTTTCCATCTCCGCCGTTGATGATGATGATGAACATAACGACGGTTTCACAACCCCCATCTCTTCACATCATAAGATTCCTGTCATTCCACACTGTCCCCCGGCTCCTTCAAGACCCAAACCCATCTCCTTGTCCAGAACCTTGTCCCCGCGAGCCTCCGGCGTTCGTAGAGGTTTTCTAGTGTATATCTCCGACCAGATCGTTGATTCCATCTTTTCCGATGATTTGCTGCATCAGAAGAGTAAGAAGAAAGCTCGCAAAGACGACGATAATGGCGATCCAAAACGAAATCCTAAATCGTAA

Coding sequence (CDS)

ATGGCCTCAGAATTCCAAGAAATCTCCCCCGGGCCCCTCCCTTTGCCTGATCATCAGATTTCCTTGATCCGCCTCGACCACATCGACTTCCTTTTCGATTCCTTCTCCTCCATCAGTACTCCACCTAATTCTCTCCCCTCCCCTTCCCGTTCCGTACAAGATCAACCACCTGTTTCCATCTCCGCCGTTGATGATGATGATGAACATAACGACGGTTTCACAACCCCCATCTCTTCACATCATAAGATTCCTGTCATTCCACACTGTCCCCCGGCTCCTTCAAGACCCAAACCCATCTCCTTGTCCAGAACCTTGTCCCCGCGAGCCTCCGGCGTTCGTAGAGGTTTTCTAGTGTATATCTCCGACCAGATCGTTGATTCCATCTTTTCCGATGATTTGCTGCATCAGAAGAGTAAGAAGAAAGCTCGCAAAGACGACGATAATGGCGATCCAAAACGAAATCCTAAATCGTAA

Protein sequence

MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYISDQIVDSIFSDDLLHQKSKKKARKDDDNGDPKRNPKS*
Homology
BLAST of CsGy4G014077 vs. NCBI nr
Match: KAE8649529.1 (hypothetical protein Csa_017979 [Cucumis sativus])

HSP 1 Score: 311 bits (797), Expect = 8.61e-107
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI 60
           MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI
Sbjct: 1   MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI 60

Query: 61  SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYI 120
           SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYI
Sbjct: 61  SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYI 120

Query: 121 SDQIVDSIFSDDLLHQKSKKKARKDDDNGDPKRNPKS 157
           SDQIVDSIFSDDLLHQKSKKKARKDDDNGDPKRNPKS
Sbjct: 121 SDQIVDSIFSDDLLHQKSKKKARKDDDNGDPKRNPKS 157

BLAST of CsGy4G014077 vs. NCBI nr
Match: KAA0032644.1 (cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >TYK23525.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 255 bits (651), Expect = 1.28e-84
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0

Query: 1   MASEFQEISPGP-LPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVS 60
           M SEFQEISP P LPLPDHQISLIRLDHIDFLFDSFSS  T P SLPSPS S+QDQPPVS
Sbjct: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60

Query: 61  ISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVY 120
           ISAVDDD+EH+DGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLS RAS VRRGFLVY
Sbjct: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120

Query: 121 ISDQIVDSIFSDDLLHQKSKKKARKDDDNG 149
           ISD+IVDSIFSDDLLH KSKK ARKDDDNG
Sbjct: 121 ISDEIVDSIFSDDLLHHKSKK-ARKDDDNG 149

BLAST of CsGy4G014077 vs. NCBI nr
Match: XP_038877666.1 (cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida])

HSP 1 Score: 158 bits (399), Expect = 2.04e-46
Identity = 100/155 (64.52%), Postives = 108/155 (69.68%), Query Frame = 0

Query: 1   MASEFQEISPGPLPLPDHQISL--------IRLDHIDFLFDSFSSISTPPNSLPSPSRSV 60
           MASEFQEIS   L LPD QIS          RL+ IDF+F    S++  P+ L       
Sbjct: 1   MASEFQEIS---LTLPD-QISFSAITPQPTFRLNQIDFIF----SLNNEPDRL------- 60

Query: 61  QDQPPVSISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGV 120
              P  SISAVDDDD   DGF TP+SS HKIPV+ HCPPAP RPKPISLSRT S RASGV
Sbjct: 61  --APAESISAVDDDD---DGFRTPVSSDHKIPVVRHCPPAPKRPKPISLSRTSSMRASGV 120

Query: 121 RRGFLVYISDQIVDSIFSDDLLHQKSKKKARKDDD 147
           RRGF VYISD+IVDSIF  DLLHQKSKKKARKDDD
Sbjct: 121 RRGFRVYISDEIVDSIFCSDLLHQKSKKKARKDDD 135

BLAST of CsGy4G014077 vs. NCBI nr
Match: XP_023518540.1 (uncharacterized protein LOC111782016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123 bits (309), Expect = 5.96e-32
Identity = 84/155 (54.19%), Postives = 99/155 (63.87%), Query Frame = 0

Query: 1   MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVS- 60
           MAS+F+EIS  P      ++ L   D I+F+F    ++   P +L S  R     P  S 
Sbjct: 62  MASQFREISLTP---ESFRVKLEDADQIEFIF----AVENRPLALESQQRCDSSAPEESL 121

Query: 61  -ISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLV 120
            ISAVDD+D    GF TP SS +KIP++ HCPPAP RPKPISLSRT SPR SGVRRGF V
Sbjct: 122 LISAVDDED----GFRTPTSSDYKIPLVEHCPPAPRRPKPISLSRT-SPRVSGVRRGFRV 181

Query: 121 YISDQIVDSIFSD----DLLHQKSKKKARKDDDNG 149
           YISD+IVDSIFS     D L  K+KK ARKDD  G
Sbjct: 182 YISDEIVDSIFSSSFGSDFLQHKNKK-ARKDDHGG 203

BLAST of CsGy4G014077 vs. NCBI nr
Match: KAG6603657.1 (Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033839.1 Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (297), Expect = 7.90e-31
Identity = 87/161 (54.04%), Postives = 101/161 (62.73%), Query Frame = 0

Query: 1   MASEFQEISPGPLP------LPDHQISLIRLD----HIDFLFDSFSSISTPPNSLPSPSR 60
           MAS FQEISP   P      +   Q   + L+     IDF+F   +    PP +  S S 
Sbjct: 1   MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIF---ALNDDPPLASDSVSV 60

Query: 61  SV-QDQPPVSISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRA 120
           S+ +  PP SIS  DDDD    GF TP SS HKIPV+  CPPAP RPKPIS SRTL PR 
Sbjct: 61  SLDRSAPPDSIS--DDDD----GFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-PRT 120

Query: 121 SGVRRGFLVYISDQIVDSIFSDDLLHQKSKKKARKDDDNGD 150
           SGVRRGF VYISD+I DSIF  DLLHQK+KK ARK+ + G+
Sbjct: 121 SGVRRGFRVYISDEIADSIFCPDLLHQKTKK-ARKNGNGGE 150

BLAST of CsGy4G014077 vs. ExPASy TrEMBL
Match: A0A0A0KZJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295530 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 3.01e-101
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 1   MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI 60
           MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI
Sbjct: 1   MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI 60

Query: 61  SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYI 120
           SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYI
Sbjct: 61  SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVYI 120

Query: 121 SDQIVDSIFSDDLLHQKSKKKARKDDDNG 149
           SDQIVDSIFSDDLLHQKSKKKARKDDDNG
Sbjct: 121 SDQIVDSIFSDDLLHQKSKKKARKDDDNG 149

BLAST of CsGy4G014077 vs. ExPASy TrEMBL
Match: A0A5A7SN91 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00290 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 6.18e-85
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0

Query: 1   MASEFQEISPGP-LPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVS 60
           M SEFQEISP P LPLPDHQISLIRLDHIDFLFDSFSS  T P SLPSPS S+QDQPPVS
Sbjct: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60

Query: 61  ISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVY 120
           ISAVDDD+EH+DGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLS RAS VRRGFLVY
Sbjct: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120

Query: 121 ISDQIVDSIFSDDLLHQKSKKKARKDDDNG 149
           ISD+IVDSIFSDDLLH KSKK ARKDDDNG
Sbjct: 121 ISDEIVDSIFSDDLLHHKSKK-ARKDDDNG 149

BLAST of CsGy4G014077 vs. ExPASy TrEMBL
Match: A0A6J1GEW0 (uncharacterized protein LOC111453550 OS=Cucurbita moschata OX=3662 GN=LOC111453550 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 2.19e-30
Identity = 87/161 (54.04%), Postives = 101/161 (62.73%), Query Frame = 0

Query: 1   MASEFQEISPGPLP------LPDHQISLIRLD----HIDFLFDSFSSISTPPNSLPSPSR 60
           MAS FQEISP   P      +   Q   + L+     IDF+F   +    PP +  S S 
Sbjct: 65  MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIF---ALNDDPPLASDSVSV 124

Query: 61  SV-QDQPPVSISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRA 120
           S+ +  PP SIS  DDDD    GF TP SS HKIPV+  CPPAP RPKPIS SRTL PR 
Sbjct: 125 SLDRSAPPDSIS--DDDD----GFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-PRT 184

Query: 121 SGVRRGFLVYISDQIVDSIFSDDLLHQKSKKKARKDDDNGD 150
           SGVRRGF VYISD+I DSIF  DLLHQK+KK ARK+ + G+
Sbjct: 185 SGVRRGFRVYISDEIADSIFCPDLLHQKTKK-ARKNGNGGE 214

BLAST of CsGy4G014077 vs. ExPASy TrEMBL
Match: A0A6J1CQ22 (cyclin-dependent protein kinase inhibitor SMR2-like OS=Momordica charantia OX=3673 GN=LOC111013692 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.53e-27
Identity = 79/148 (53.38%), Postives = 88/148 (59.46%), Query Frame = 0

Query: 1   MASEFQEISPGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVSI 60
           MAS FQEIS  P P    QISL  +    FL +   + +         +   Q +   SI
Sbjct: 1   MASHFQEISLSPSP----QISLPSISPESFLLNLEDANNQIDFLFALNTNQQQARRDDSI 60

Query: 61  SAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISL-SRTLSPR-ASGVRRGFLV 120
           SA DD      GF TP SS HKIPVI  CPPAP RPKPIS  SR  SPR ASGVRRGF V
Sbjct: 61  SADDD------GFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRLASGVRRGFRV 120

Query: 121 YISDQIVDSIFSDDLLHQKSKKKARKDD 146
           YISD+IV+SIFS    HQK KK AR+DD
Sbjct: 121 YISDEIVESIFSSSFAHQKMKK-ARRDD 137

BLAST of CsGy4G014077 vs. ExPASy TrEMBL
Match: A0A5D3AH22 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A01G241600v1 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.83e-11
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 60  ISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTL--SPRASGVRRGFL 119
           + A DD D+ +DGF TP S  HKIPV+  CPPAP +PKP+S  +    SP +SG  R  L
Sbjct: 99  LKANDDGDDDDDGFKTPTSLDHKIPVMKQCPPAPRKPKPLSSKKRKPSSPPSSGGDRNLL 158

Query: 120 VYISDQIVDSIFSDDLL---HQKSKKKARKDDDN 148
                + V+S+F  D+L   H+K KK ARK+D N
Sbjct: 159 KIDFAKEVESLFPSDVLADIHRKVKK-ARKEDYN 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8649529.18.61e-107100.00hypothetical protein Csa_017979 [Cucumis sativus][more]
KAA0032644.11.28e-8489.33cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >... [more]
XP_038877666.12.04e-4664.52cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida][more]
XP_023518540.15.96e-3254.19uncharacterized protein LOC111782016 [Cucurbita pepo subsp. pepo][more]
KAG6603657.17.90e-3154.04Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma ... [more]
Match NameE-valueIdentityDescription
A0A0A0KZJ93.01e-101100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295530 PE=4 SV=1[more]
A0A5A7SN916.18e-8589.33Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ... [more]
A0A6J1GEW02.19e-3054.04uncharacterized protein LOC111453550 OS=Cucurbita moschata OX=3662 GN=LOC1114535... [more]
A0A6J1CQ223.53e-2753.38cyclin-dependent protein kinase inhibitor SMR2-like OS=Momordica charantia OX=36... [more]
A0A5D3AH221.83e-1146.81Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A01G241600v1 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58
NoneNo IPR availablePANTHERPTHR33142:SF79CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR3coord: 20..147
IPR040389Cyclin-dependent protein kinase inhibitor SMRPANTHERPTHR33142CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13coord: 20..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G014077.1CsGy4G014077.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication