CsGy4G013970 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G013970
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionATP synthase
LocationGy14Chr4: 18882168 .. 18883435 (+)
RNA-Seq ExpressionCsGy4G013970
SyntenyCsGy4G013970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTTTCACTTGCGAAAGAGACGAACAAACGCAAACAGTCGAACGAAGATGAGGAAATTCGATCCATGGCCGGTGTTTTTCAGGCGAGAATGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACCGGCTCCTTAATTACCAAGATGACGGCTGGATTTACTGGTACGATCGTCGATTTAAATTCCTTCTCGATTCCTCGTTTTCTTTGTTTTGTTTTGTTTTTTTTTTTGGTTTATTTGAATCCTTCTCTTCTGTATGTTACTGATTCTCTCGTGGATTAACTTTCAGAGGAAGAGGTGAAGAATTCTCCCTTCGTGCAGAGGCACAATCGGTATTTTCTCGGAACCCTAATCTCCGCACATATTCTTCGATTTGCATAACAATTAGATCTAGTATCTCATATGGTTTCGGTTTGTCTATGGATTTGTGGTTTTAGTCTGAAAAATCCACAAATCATTTGAAGATAATTGTAGATTTTGATACTGGGTTTCTGATTTCTGATTTGGGATTTCTACATTTACTTGCGTCTGGCAGTCACAAGTTGTTTTTATGCTGCTTATTTCTCACTAATGGCCATTCTTTTTAGTATAAATCTTGATTTGGTGGTGATTCAGTGAAGGCTAAAAATCCATCACATAAGTTTAGTCATTTCTAGTGAGAATTAAGCTTTTTTACCATAATCTTGTAGTGATTAAGCTTCTTTTTCTCTAGATGTTATTGTAGAATCACATATATTGTTTTTGCATTCGAGCATACTTATATTTCTACAGCGGACAGATAGATTGTTGATTTAGAACATAGGAATGTGCTTGACAAGTTAATGCTGTGCCTGCTGCAGGTAAATCCTATAATGGGGGTATTACTGGCGTTGGAAAATGTGAGATGTTTTTCATTTGTGCAAAATAACAGATGCTGCAGTTAGTTTACCAGCCATTTGAATCAAGTTTTACTGGTACTTCTCAGTATGTATCAAAACTTGGATGGATTTTTTGTGATGTTGTTTACTTATATATGAACATGAATTCTTTTTCGTATCATCGTTGGATTGAAAGCTTTTCCCTTCTTTAATTTGGAATGGTAGAAACTTGTTCATGTACTGATTAGTACTTGTCGTATAAAAGCTTACATGAATAGTTAGATTAGGTAACACTCTCATCTGGACTAATTCCTTGAAACAACTGGCTGAGATCGAGGAATTCATAGGACTTTTATTTGTCAGTAAGAGCAAAATGTTAGTAGTTTTGTTATTTCATTTTGGT

mRNA sequence

CTTTTTTTCACTTGCGAAAGAGACGAACAAACGCAAACAGTCGAACGAAGATGAGGAAATTCGATCCATGGCCGGTGTTTTTCAGGCGAGAATGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACCGGCTCCTTAATTACCAAGATGACGGCTGGATTTACTGAGGAAGAGGTGAAGAATTCTCCCTTCGTGCAGAGGCACAATCGGTATTTTCTCGGAACCCTAATCTCCGCACATATTCTTCGATTTGCATAACAATTAGATCTAGTATCTCATATGGTTTCGGTTTGTCTATGGATTTGTGGTTTTAGTCTGAAAAATCCACAAATCATTTGAAGATAATTGTAGATTTTGATACTGGGTTTCTGATTTCTGATTTGGGATTTCTACATTTACTTGCGTCTGGCAGTCACAAGTTGTTTTTATGCTGCTTATTTCTCACTAATGGCCATTCTTTTTAGTATAAATCTTGATTTGGTGGTGATTCAGTGAAGGCTAAAAATCCATCACATAAGTTTAGTCATTTCTAGTGAGAATTAAGCTTTTTTACCATAATCTTGTAGTGATTAAGCTTCTTTTTCTCTAGATGTTATTGTAGAATCACATATATTGTTTTTGCATTCGAGCATACTTATATTTCTACAGCGGACAGATAGATTGTTGATTTAGAACATAGGAATGTGCTTGACAAGTTAATGCTGTGCCTGCTGCAGGTAAATCCTATAATGGGGGTATTACTGGCGTTGGAAAATGTGAGATGTTTTTCATTTGTGCAAAATAACAGATGCTGCAGTTAGTTTACCAGCCATTTGAATCAAGTTTTACTGGTACTTCTCAGTATGTATCAAAACTTGGATGGATTTTTTGTGATGTTGTTTACTTATATATGAACATGAATTCTTTTTCGTATCATCGTTGGATTGAAAGCTTTTCCCTTCTTTAATTTGGAATGGTAGAAACTTGTTCATGTACTGATTAGTACTTGTCGTATAAAAGCTTACATGAATAGTTAGATTAGGTAACACTCTCATCTGGACTAATTCCTTGAAACAACTGGCTGAGATCGAGGAATTCATAGGACTTTTATTTGTCAGTAAGAGCAAAATGTTAGTAGTTTTGTTATTTCATTTTGGT

Coding sequence (CDS)

ATGAGGAAATTCGATCCATGGCCGGTGTTTTTCAGGCGAGAATGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACCGGCTCCTTAATTACCAAGATGACGGCTGGATTTACTGAGGAAGAGGTGAAGAATTCTCCCTTCGTGCAGAGGCACAATCGGTATTTTCTCGGAACCCTAATCTCCGCACATATTCTTCGATTTGCATAA

Protein sequence

MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGTLISAHILRFA*
Homology
[Close]
BLAST of CsGy4G013970 vs. ExPASy Swiss-Prot
Match: P80497 (ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-06
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGF 26
          MR+FDPWPVFFRREW RN PFLV F
Sbjct: 1  MRQFDPWPVFFRREWSRNQPFLVXF 25

[Close]
BLAST of CsGy4G013970 vs. NCBI nr
Match: KAE8649524.1 (hypothetical protein Csa_017989, partial [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 5.57e-46
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 60
          MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT
Sbjct: 11 MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 70

Query: 61 LISAHILRFA 70
          LISAHILRFA
Sbjct: 71 LISAHILRFA 80

[Close]
BLAST of CsGy4G013970 vs. NCBI nr
Match: KAG7027319.1 (hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (313), Expect = 1.22e-35
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 60
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAG +EEEVK SPF +RHNRYFLGT
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGT 60

Query: 61 LI 62
          LI
Sbjct: 61 LI 62

[Close]
BLAST of CsGy4G013970 vs. NCBI nr
Match: XP_022978953.1 (uncharacterized protein LOC111478752 isoform X2 [Cucurbita maxima] >XP_023543216.1 uncharacterized protein LOC111803160 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 7.61e-33
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. NCBI nr
Match: XP_022978952.1 (uncharacterized protein LOC111478752 isoform X1 [Cucurbita maxima] >XP_023543215.1 uncharacterized protein LOC111803160 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 7.80e-33
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. NCBI nr
Match: XP_008447675.1 (PREDICTED: uncharacterized protein LOC103490081 [Cucumis melo] >KAA0032622.1 uncharacterized protein E6C27_scaffold184G00070 [Cucumis melo var. makuwa] >TYK23504.1 uncharacterized protein E5676_scaffold500G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.08e-32
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+ ITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. ExPASy TrEMBL
Match: A0A0A0KZI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 2.02e-46
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 60
          MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 60

Query: 61 LISAHILRFA 70
          LISAHILRFA
Sbjct: 61 LISAHILRFA 70

[Close]
BLAST of CsGy4G013970 vs. ExPASy TrEMBL
Match: A0A6J1IUR1 (uncharacterized protein LOC111478752 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478752 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 3.68e-33
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. ExPASy TrEMBL
Match: A0A6J1IMH0 (uncharacterized protein LOC111478752 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478752 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 3.78e-33
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. ExPASy TrEMBL
Match: A0A5A7SNJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00070 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 5.24e-33
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+ ITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. ExPASy TrEMBL
Match: A0A1S3BIW2 (uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 5.24e-33
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+ ITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CsGy4G013970 vs. TAIR 10
Match: AT3G46430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAG TEE+ KNS FVQ+H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

[Close]
BLAST of CsGy4G013970 vs. TAIR 10
Match: AT5G59613.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAG TEE+ KNS FVQ+H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

[Close]
BLAST of CsGy4G013970 vs. TAIR 10
Match: AT5G59613.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). )

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAG TEE+ KNS FVQ+H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

The following BLAST results are available for this feature:
BLAST of CsGy4G013970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P804971.9e-0684.00ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=411... [more]
BLAST of CsGy4G013970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649524.15.57e-46100.00hypothetical protein Csa_017989, partial [Cucumis sativus][more]
KAG7027319.11.22e-3590.32hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022978953.17.61e-3394.55uncharacterized protein LOC111478752 isoform X2 [Cucurbita maxima] >XP_023543216... [more]
XP_022978952.17.80e-3394.55uncharacterized protein LOC111478752 isoform X1 [Cucurbita maxima] >XP_023543215... [more]
XP_008447675.11.08e-3294.55PREDICTED: uncharacterized protein LOC103490081 [Cucumis melo] >KAA0032622.1 unc... [more]
BLAST of CsGy4G013970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZI32.02e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1[more]
A0A6J1IUR13.68e-3394.55uncharacterized protein LOC111478752 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IMH03.78e-3394.55uncharacterized protein LOC111478752 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5A7SNJ65.24e-3394.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BIW25.24e-3394.55uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=... [more]
BLAST of CsGy4G013970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G46430.19.6e-2276.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G59613.19.6e-2276.36unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G59613.29.6e-2276.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34565TRANSMEMBRANE PROTEINcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G013970.1CsGy4G013970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane