CsGy4G013920 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G013920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Histone H2A
Location	Gy14Chr4: 18850029 .. 18852529 (-)
RNA-Seq Expression	CsGy4G013920
Synteny	CsGy4G013920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGATTCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTTGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTGAATACTACTACTTCGTTCTCTCAGTTTGTGACTTTCGATTTACTTAATTTAGGGTTTCTTTTTTCAGTTTCTGTTGGAGGATTTTACATGTTTTGATTGTATGTGTGAAATCTGATCGTTTATTCATGGATTATATGCTTGGATTGAAGTGCATTTTCTTTATTTCTTGTTAATGACTTAGAATTTGATTTTCTTACCTCTTTCTCTTCATTTATAAAATCCCTAATTTAATGGAATTTGTTATTATTATTATTTATGAAATCTATTCTCTGATTTCTCTATGTGGTTTTGTGTACATAGACAAGTTCATTCTTGACAATCTAGAAAGGAAAAAATCACCTAAGGTTTTTTTTCAAAAAAAAAAAAATACAATTTTAAGGTCTTTCTTAATATCGATTTCACTTTTTTTAGCTTTTTATTTTTAAAATTAAGCTTATAAACCTTCCTTTCATTTGTAAGATCGCGTTTGGTAACCACATTTTGTTTTTTTGTTCTTGGTTTTTTGAAAATTAAGCCAATTGACTCTCATAATCTTAGGATGGTAAAGTTTAAAATCGTCGTCAAATTCTAAAAACAAAATCTACATTCTTTTAGTTTCAAATTTTAGGTTGGTTTTCTCAAAATGTAGCCAACAAAACTTAGAAACCAATGAATGAAAGTAGGATTTGTAGGTATAATTTTTAAAAACCAAATGATTAGCAAACAGAACTTAAATTTTCTGATGGGTTCTTACTTTTTACCAATATTTTAAAAACGATTCTCAAGTATTTAATTTTTCTTTAAAAAAAGTCATTTAAAATTTTTTATAGTGTTTGGTAACCACTCATACCAACTTTTTTTAAGGTATTTTAAACCATTTTTATCTAAAAGAAAATTAAACAAAAATTAGCTTTGGAAAAATACTTTTTAATTTGACCAAGAATTCTACAAGATGTAATAGTTTTTATTTTCAAAAATAAAAAGTGAAAAAAGAAATGGGTAGCAAATAGAAACTCAAATTTCTGTAAATTGATTTACAATTGTTTCATCTTTGTTTCTATATTACTGTTTTCATGTTTTGTAAAGAGACACTTAAATCTCTAGTTAAATTCTTAAAGCAAATACAAATTAATAGAACGCGGATATCACAAACACTTTTATTTCAGGTCTTTTTTTTTTTTCAAAGATCGTTGTTTGGTAGAGCTTTTAGAGTTTGAAAAAGCGTAGGAATGTTGTTTATAAATCAAACACTGTTTTAAACAACAAAATTCATTTTTTTCAAATATTTAATTAGTTTATTTTAGTGAATCTGAAAAATTAGAAATTCAAACTGAATAGATTCTCAACTTCCCTCGGTATCCGCTTTGGCGTTGCTTTTATAACTCTTTTCCGCTGTCCTTTATGTCCTGATTCTGATGCTTTATCCAAACGACTTTGTGTTGATTTTGGCTTCATAGAAATTGCTGCCTTTTTTTTTTTTTTTGTATTTCAACAATTGCGGGGTCGGATATCAAACCATAAATCTTTAAGATGGTAAATCGATGTCTTTGTTTAGTAAGCTATGCTTGGATCGACACCTAGATTCATTCTAAAATAGAACTTTGGATTTTTTTGTTTCTTACCAAGAGAAAATTTGATCATCCATTGAGGTCTAGTAGAATTCTTTTAATTTATTCACCGATCAAACCTTATACACAAGTGTTTGATTATAATACAAGAATTGTTGTAATGCTGAGCTATTGGGTTATTGTGTTGAGGATATCTATACAAGATGAAATATAAGTATCACTAACTTCCAAACTTGAACATATTGATGTCGAGGTGATTTAATATAGTATCTGAGTTAATCATCATAGGAATCATAGGTTGAACTAATGGTAAATTTCTAGTGACTACCTAACTAGGGTTTAATATCCTAGAGTTTTCTTGATATCCAAATATTATAGGAAAAGGTAGGTTGTCTAATGAGATTAGTCGAGATGTGTATAAGCTGATCCAGAAACTCACAAATATACAGATATGTAGCATATGAGTAAGCATTCTATCACGTTATGCTTTAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTCTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGTGGCGGCAGCAAAGGAGCCCAAGTCACCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAG

mRNA sequence

ATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGATTCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTTGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTCTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGTGGCGGCAGCAAAGGAGCCCAAGTCACCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAG

Coding sequence (CDS)

ATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGATTCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTTGGCAGAATCGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTCTTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGTGGCGGCAGCAAAGGAGCCCAAGTCACCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAG

Protein sequence

MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERVAAAKEPKSPSKGTKSPKKA*

Homology

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BLAST of CsGy4G013920 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 132/153 (86.27%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G   KKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAA-AKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+ A+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of CsGy4G013920 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 134/154 (87.01%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+G K KKG AG R G   KKKPVSRSVKAGLQFPVGRIGR+LK GRY+QRVG+GAPVY
Sbjct: 1   MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAA--KEPKSPSKGTKSPKKA 153
           INPVLLPKK+E+ AAA  KEPKSP+K TKSPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of CsGy4G013920 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-62
Identity = 129/152 (84.87%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M++ GKAKKGF GR+GG   +KK V+RSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   METAGKAKKGFGGRKGG--PRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKK+    AAKEPKSPSK  KSPKKA
Sbjct: 121 INPVLLPKKTAE-KAAKEPKSPSKAGKSPKKA 149

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BLAST of CsGy4G013920 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.8e-61
Identity = 131/160 (81.88%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MDSGGKA--KKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAP 60
           M+ G K   K G  GRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERVAA-----AKEPKSPSKG-TKSPKKA 153
           PNINPVLLPKK+   AA      K PKSP K  TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of CsGy4G013920 vs. ExPASy Swiss-Prot
Match: Q6L500 (Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.8e-61
Identity = 131/160 (81.88%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MDSGGKA--KKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAP 60
           M+ G K   K G  GRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERVAA-----AKEPKSPSKG-TKSPKKA 153
           PNINPVLLPKK+   AA      K PKSP K  TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 289 bits (739), Expect = 4.14e-98
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER AAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

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BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (711), Expect = 7.97e-94
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVA-AAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER   AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of CsGy4G013920 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 274 bits (700), Expect = 3.54e-92
Identity = 146/152 (96.05%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRRGGGP-KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER AA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

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BLAST of CsGy4G013920 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 259 bits (662), Expect = 2.13e-86
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRRGGGP-KKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKK+E+ AAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of CsGy4G013920 vs. NCBI nr
Match: KAG5553850.1 (hypothetical protein RHGRI_011654 [Rhododendron griersonianum])

HSP 1 Score: 258 bits (659), Expect = 6.09e-86
Identity = 137/152 (90.13%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M++GGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   METGGKAKKGAAGRRGGGP-KKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKK+E+ AAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of CsGy4G013920 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 2.00e-98
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER AAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

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BLAST of CsGy4G013920 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 278 bits (711), Expect = 3.86e-94
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVA-AAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER   AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of CsGy4G013920 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 278 bits (711), Expect = 3.86e-94
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVA-AAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER   AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of CsGy4G013920 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 274 bits (700), Expect = 1.71e-92
Identity = 146/152 (96.05%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRRGGGP-KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKKSER AA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

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BLAST of CsGy4G013920 vs. ExPASy TrEMBL
Match: A0A6A4LE10 (Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE=3 SV=1)

HSP 1 Score: 259 bits (662), Expect = 1.03e-86
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRRGGGP-KKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAAAKEPKSPSKGTKSPKKA 152
           INPVLLPKK+E+ AAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of CsGy4G013920 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-66
Identity = 132/153 (86.27%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G   KKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERVAA-AKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+ A+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of CsGy4G013920 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 235.0 bits (598), Expect = 4.1e-62
Identity = 132/177 (74.58%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G   KKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERVAA-AKEPKSPSKGTKSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+ A+  K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

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BLAST of CsGy4G013920 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-53
Identity = 114/153 (74.51%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+S GK KK F GR+     K K VS+S+KAGLQFPVGRI R+LK GRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKS-ERVAAAKEPKSPSKGTKSPKKA 153
           IN VLLPKKS  + A  K  KSP    KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---VKSPKKA 150

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BLAST of CsGy4G013920 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-50
Identity = 108/147 (73.47%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 6   KAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVL 65
           K  +G  GR+GG   +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRKGG--DRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSERVAAAKEPKSPSKGTKSPKKA 153
           LPKKS    A+      +  TKSPKKA
Sbjct: 129 LPKKS---TASSSQAEKASATKSPKKA 150

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BLAST of CsGy4G013920 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 174.5 bits (441), Expect = 6.6e-44
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 13  GRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEV 72
           G+  G+ S KK  +RS KAGLQFPVGRI R+LK G+Y++RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 131
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of CsGy4G013920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	5.1e-65	86.27	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	1.1e-64	87.01	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P19177	4.0e-62	84.87	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
A2Y5G8	5.8e-61	81.88	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]
Q6L500	5.8e-61	81.88	Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 ...	[more]

BLAST of CsGy4G013920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142082.1	4.14e-98	99.34	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_008447608.1	7.97e-94	96.73	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_022143711.1	3.54e-92	96.05	histone H2A [Momordica charantia]	[more]
KAE9455642.1	2.13e-86	90.79	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]
KAG5553850.1	6.09e-86	90.13	hypothetical protein RHGRI_011654 [Rhododendron griersonianum]	[more]

BLAST of CsGy4G013920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXF2	2.00e-98	99.34	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A5A7U1I6	3.86e-94	96.73	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	3.86e-94	96.73	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A6J1CR43	1.71e-92	96.05	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A6A4LE10	1.03e-86	90.79	Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE...	[more]

BLAST of CsGy4G013920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	3.6e-66	86.27	histone H2A 12	[more]
AT5G02560.2	4.1e-62	74.58	histone H2A 12	[more]
AT5G59870.1	2.7e-53	74.51	histone H2A 6	[more]
AT5G27670.1	2.8e-50	73.47	histone H2A 7	[more]
AT1G51060.1	6.6e-44	74.58	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 81..95 score: 73.78 coord: 109..127 score: 75.79 coord: 52..67 score: 86.43 coord: 67..80 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 1.9E-78 score: 276.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 15..129 e-value: 7.02385E-67 score: 196.787
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..137 e-value: 1.8E-62 score: 210.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..132
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..132 e-value: 5.2E-18 score: 64.5
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 18..98 e-value: 5.3E-13 score: 49.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..147
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 9..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G013920.2	CsGy4G013920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity